-
1
-
-
33845780212
-
Basic overview of chemoinformatics
-
Engel, T. Basic overview of chemoinformatics. J. Chem. Inf. Model. 2006, 46, 2267-2277.
-
(2006)
J. Chem. Inf. Model
, vol.46
, pp. 2267-2277
-
-
Engel, T.1
-
2
-
-
0000242652
-
Chemoinformatics: What is it and how does it impact drug discovery
-
Brown, F.K. Chemoinformatics: What is it and how does it impact drug discovery. Annu. Rep. Med. Chem. 1998, 33, 375-384.
-
(1998)
Annu. Rep. Med. Chem
, vol.33
, pp. 375-384
-
-
Brown, F.K.1
-
4
-
-
0036835460
-
Integration of virtual and high-throughput screening
-
Bajorath, J. Integration of virtual and high-throughput screening. Nat. Rev. Drug. Discov. 2002, 1, 882-894.
-
(2002)
Nat. Rev. Drug. Discov
, vol.1
, pp. 882-894
-
-
Bajorath, J.1
-
6
-
-
51649200028
-
Life, information theory, and topology
-
Rashevsky, N. Life, information theory, and topology. Bull. Math. Biophys. 1955, 17, 229-235.
-
(1955)
Bull. Math. Biophys
, vol.17
, pp. 229-235
-
-
Rashevsky, N.1
-
7
-
-
51649221175
-
A note on the information content of graphs
-
Trucco, E. A note on the information content of graphs. Bull. Math. Biophys. 1956; 18, 129-135.
-
(1956)
Bull. Math. Biophys
, vol.18
, pp. 129-135
-
-
Trucco, E.1
-
8
-
-
51249194085
-
On the information content of graphs: Compound symbols; Different states for each point
-
Trucco, E. On the information content of graphs: Compound symbols; Different states for each point. Bull. Math. Biophys. 1956, 8, 237-253.
-
(1956)
Bull. Math. Biophys
, vol.8
, pp. 237-253
-
-
Trucco, E.1
-
9
-
-
0014257683
-
Entropy and the complexity of graphs: I. An index of the relative complexity of a graph
-
Mowshowitz, A. Entropy and the complexity of graphs: I. An index of the relative complexity of a graph. Bull. Math. Biophys. 1968, 30, 175-204.
-
(1968)
Bull. Math. Biophys
, vol.30
, pp. 175-204
-
-
Mowshowitz, A.1
-
10
-
-
0014296467
-
Entropy and the complexity of graphs: II. The information content of digraphs and infinite graphs
-
Mowshowitz, A. Entropy and the complexity of graphs: II. The information content of digraphs and infinite graphs. Bull. Math. Biophys. 1968, 30, 225-240.
-
(1968)
Bull. Math. Biophys
, vol.30
, pp. 225-240
-
-
Mowshowitz, A.1
-
11
-
-
51249190020
-
Entropy and the complexity of graphs: III. Graphs with prescribed information content
-
Mowshowitz, A. Entropy and the complexity of graphs: III. Graphs with prescribed information content. Bull. Math. Biophys. 1968, 30, 387-414.
-
(1968)
Bull. Math. Biophys
, vol.30
, pp. 387-414
-
-
Mowshowitz, A.1
-
12
-
-
51249189854
-
Entropy and the complexity of graphs: IV. Entropy measures and graphical structure
-
Mowshowitz, A. Entropy and the complexity of graphs: IV. Entropy measures and graphical structure. Bull. Math. Biophys. 1968, 30, 533-546.
-
(1968)
Bull. Math. Biophys
, vol.30
, pp. 533-546
-
-
Mowshowitz, A.1
-
13
-
-
0000524226
-
The first general index of molecular complexity
-
Bertz, S.H. The first general index of molecular complexity. J. Am. Chem. Soc. 1981, 103, 3599-3601.
-
(1981)
J. Am. Chem. Soc
, vol.103
, pp. 3599-3601
-
-
Bertz, S.H.1
-
14
-
-
0002183826
-
On the complexity of graphs and molecules
-
Bertz, S.H. On the complexity of graphs and molecules. Bull. Math. Biol. 1983, 45, 849-855.
-
(1983)
Bull. Math. Biol
, vol.45
, pp. 849-855
-
-
Bertz, S.H.1
-
15
-
-
0017274385
-
Symmetry and information content of chemical structures
-
Bonchev, D.; Kamenski, D.; Kamenska V. Symmetry and information content of chemical structures. Bull. Math. Biol. 1976, 38, 119-133.
-
(1976)
Bull. Math. Biol
, vol.38
, pp. 119-133
-
-
Bonchev, D.1
Kamenski, D.2
Kamenska, V.3
-
16
-
-
0343071989
-
Information theory, distance matrix, and molecular branching
-
Bonchev, D.; Trinajstić, N. Information theory, distance matrix, and molecular branching. J. Chem. Phys. 1977, 67, 4517-4533.
-
(1977)
J. Chem. Phys
, vol.67
, pp. 4517-4533
-
-
Bonchev, D.1
Trinajstić, N.2
-
17
-
-
33746862161
-
SHED: Shannon entropy descriptors from topological feature distributions
-
Gregori-Puigjané, E.; Mestres, J. SHED: Shannon entropy descriptors from topological feature distributions. J. Chem. Inf. Model. 2006, 46, 1615-1622.
-
(2006)
J. Chem. Inf. Model
, vol.46
, pp. 1615-1622
-
-
Gregori-Puigjané, E.1
Mestres, J.2
-
18
-
-
33847207834
-
Molecular similarity analysis in virtual screening: foundations, limitations and novel approaches
-
Eckert, H.; Bajorath, J. Molecular similarity analysis in virtual screening: foundations, limitations and novel approaches. Drug Discov. Today 2007, 12, 225-233.
-
(2007)
Drug Discov. Today
, vol.12
, pp. 225-233
-
-
Eckert, H.1
Bajorath, J.2
-
19
-
-
0003641826
-
-
Eds. John Wiley & Sons: New York, NY, USA
-
Johnson, M.A., Maggiora, G., Eds. Concepts and Applications of Molecular Similarity, John Wiley & Sons: New York, NY, USA, 1990.
-
(1990)
Concepts and Applications of Molecular Similarity
-
-
Johnson, M.A.1
Maggiora, G.2
-
20
-
-
5344244908
-
Chemical similarity searching
-
Willett, P.; Barnard, J.M.; Downs, G.M. Chemical similarity searching. J. Chem. Inf. Comput. Sci. 1998, 38, 983-996.
-
(1998)
J. Chem. Inf. Comput. Sci
, vol.38
, pp. 983-996
-
-
Willett, P.1
Barnard, J.M.2
Downs, G.M.3
-
21
-
-
54249169660
-
Bit silencing in fingerprints enables the derivation of compound class-directed similarity metrics
-
Wang, Y.; Bajorath, J. Bit silencing in fingerprints enables the derivation of compound class-directed similarity metrics. J. Chem. Inf. Model. 2008, 48, 1754-1759.
-
(2008)
J. Chem. Inf. Model
, vol.48
, pp. 1754-1759
-
-
Wang, Y.1
Bajorath, J.2
-
22
-
-
65549112317
-
Improving the performance of extended connectivity fingerprints through activity-oriented feature filtering and application of a bit density-dependent similarity function
-
Hu, Y.; Lounkine, E.; Bajorath, J. Improving the performance of extended connectivity fingerprints through activity-oriented feature filtering and application of a bit density-dependent similarity function. ChemMedChem. 2009, 4, 540-548.
-
(2009)
ChemMedChem
, vol.4
, pp. 540-548
-
-
Hu, Y.1
Lounkine, E.2
Bajorath, J.3
-
24
-
-
33744584654
-
Induction of decision trees
-
Quinlan, J.R. Induction of decision trees. Mach. Learn. 1986, 1, 81-106.
-
(1986)
Mach. Learn
, vol.1
, pp. 81-106
-
-
Quinlan, J.R.1
-
25
-
-
67650085848
-
Development of a fingerprint reduction approach for Bayesian similarity searching based on Kullback-Leibler divergence analysis
-
Nisius, B.; Vogt, M.; Bajorath J. Development of a fingerprint reduction approach for Bayesian similarity searching based on Kullback-Leibler divergence analysis. J. Chem. Inf. Model. 2009, 49, 1347-1358.
-
(2009)
J. Chem. Inf. Model
, vol.49
, pp. 1347-1358
-
-
Nisius, B.1
Vogt, M.2
Bajorath, J.3
-
26
-
-
33846853978
-
Bayesian interpretation of a distance function for navigating high-dimensional descriptor spaces
-
Vogt, M.; Godden, J.W.; Bajorath, J. Bayesian interpretation of a distance function for navigating high-dimensional descriptor spaces. J. Chem. Inf. Model. 2007, 47, 39-46.
-
(2007)
J. Chem. Inf. Model
, vol.47
, pp. 39-46
-
-
Vogt, M.1
Godden, J.W.2
Bajorath, J.3
-
27
-
-
41549160356
-
Bayesian similarity searching in high-dimensional descriptor spaces combined with Kullback-Leibler descriptor divergence analysis
-
Vogt, M; Bajorath, J. Bayesian similarity searching in high-dimensional descriptor spaces combined with Kullback-Leibler descriptor divergence analysis. J. Chem. Inf. Model. 2008, 48, 247-255.
-
(2008)
J. Chem. Inf. Model
, vol.48
, pp. 247-255
-
-
Vogt, M1
Bajorath, J.2
-
28
-
-
73449116746
-
Molecular fingerprint recombination: generating hybrid fingerprints for similarity searching from different fingerprint types
-
Nisius, B.; Bajorath, J. Molecular fingerprint recombination: generating hybrid fingerprints for similarity searching from different fingerprint types. ChemMedChem 2009, 4, 1859-1863.
-
(2009)
ChemMedChem
, vol.4
, pp. 1859-1863
-
-
Nisius, B.1
Bajorath, J.2
-
29
-
-
74549224567
-
Reduction and recombination of fingerprints of different design increase compound recall and the structural diversity of hits
-
Nisius, B.; Bajorath, J. Reduction and recombination of fingerprints of different design increase compound recall and the structural diversity of hits. Chem. Biol. Drug Des. 2010, 75, 152-160.
-
(2010)
Chem. Biol. Drug Des
, vol.75
, pp. 152-160
-
-
Nisius, B.1
Bajorath, J.2
-
30
-
-
34247216044
-
Introduction of an information-theoretic method to predict recovery rates of active compounds for Bayesian in silico screening: Theory and screening trials
-
Vogt, M.; Bajorath, J. Introduction of an information-theoretic method to predict recovery rates of active compounds for Bayesian in silico screening: Theory and screening trials, J. Chem. Inf. Model. 2007, 47, 337-341.
-
(2007)
J. Chem. Inf. Model
, vol.47
, pp. 337-341
-
-
Vogt, M.1
Bajorath, J.2
-
31
-
-
37849012382
-
Introduction of a generally applicable method to estimate retrieval of active molecules for similarity searching using fingerprints
-
Vogt, M.; Bajorath, J. Introduction of a generally applicable method to estimate retrieval of active molecules for similarity searching using fingerprints. ChemMedChem 2007, 2, 1311-1320.
-
(2007)
ChemMedChem
, vol.2
, pp. 1311-1320
-
-
Vogt, M.1
Bajorath, J.2
-
32
-
-
0004188848
-
-
John Wiley & Sons, Inc.: New York, NY, USA
-
Cover, T.M.; Thomas, J.A. Elements of Information Theory; John Wiley & Sons, Inc.: New York, NY, USA, 1991.
-
(1991)
Elements of Information Theory
-
-
Cover, T.M.1
Thomas, J.A.2
-
33
-
-
5444225766
-
A Comparative study on feature selection methods for drug discovery
-
Liu,Y. A Comparative study on feature selection methods for drug discovery. J. Chem. Inf. Model. 2004, 44, 1823-1828.
-
(2004)
J. Chem. Inf. Model
, vol.44
, pp. 1823-1828
-
-
Liu, Y.1
-
34
-
-
5444266247
-
Evaluation of mutual information and genetic programming for feature selection in QSAR
-
Venkatraman, V.; Dalby, A.R.; Yang, Z.R. Evaluation of mutual information and genetic programming for feature selection in QSAR. J. Chem. Inf. Comput. Sci. 2004, 44, 1686-1692.
-
(2004)
J. Chem. Inf. Comput. Sci
, vol.44
, pp. 1686-1692
-
-
Venkatraman, V.1
Dalby, A.R.2
Yang, Z.R.3
-
35
-
-
77952772341
-
Extended-connectivity fingerprints
-
Rogers, D.; Hahn, M. Extended-connectivity fingerprints. J. Chem. Inf. Model. 2010, 50, 742-754.
-
(2010)
J. Chem. Inf. Model
, vol.50
, pp. 742-754
-
-
Rogers, D.1
Hahn, M.2
-
36
-
-
5544290537
-
Similarity searching of chemical databases using atom environment descriptors (MOLPRINT 2D): Evaluation of performance
-
Bender, A; Mussa, H.Y.; Glen, R.C.; Reiling, S. Similarity searching of chemical databases using atom environment descriptors (MOLPRINT 2D): Evaluation of performance. J. Chem. Inf. Comput. Sci. 2004, 44, 1708-1718.
-
(2004)
J. Chem. Inf. Comput. Sci
, vol.44
, pp. 1708-1718
-
-
Bender, A1
Mussa, H.Y.2
Glen, R.C.3
Reiling, S.4
-
37
-
-
0025952277
-
Divergence measures based on Shannon entropy
-
Lin, J. Divergence measures based on Shannon entropy. IEEE Trans. Inf. Theory 1991, 37, 145-151.
-
(1991)
IEEE Trans. Inf. Theory
, vol.37
, pp. 145-151
-
-
Lin, J.1
-
38
-
-
0035412802
-
Differential Shannon entropy as a sensitive measure of differences in database variability of molecular descriptors
-
Godden, J.W.; Bajorath, J. Differential Shannon entropy as a sensitive measure of differences in database variability of molecular descriptors. J. Chem. Inf. Comput. Sci. 2001, 41, 1060-1066.
-
(2001)
J. Chem. Inf. Comput. Sci
, vol.41
, pp. 1060-1066
-
-
Godden, J.W.1
Bajorath, J.2
-
39
-
-
0036589152
-
Differential Shannon entropy analysis identifies molecular property descriptors that predict aqueous solubility of synthetic compounds with high accuracy in binary QSAR calculations
-
Stahura, F.L.; Godden, J.W.; Bajorath, J. Differential Shannon entropy analysis identifies molecular property descriptors that predict aqueous solubility of synthetic compounds with high accuracy in binary QSAR calculations. J. Chem. Inf. Comput. Sci. 2002, 42, 550-558.
-
(2002)
J. Chem. Inf. Comput. Sci
, vol.42
, pp. 550-558
-
-
Stahura, F.L.1
Godden, J.W.2
Bajorath, J.3
-
40
-
-
68149132110
-
Shannon entropy-based fingerprint similarity search strategy
-
Wang, Y.; Geppert, H.; Bajorath, J. Shannon entropy-based fingerprint similarity search strategy. J. Chem. Inf. Model. 2009, 49, 1687-1691.
-
(2009)
J. Chem. Inf. Model
, vol.49
, pp. 1687-1691
-
-
Wang, Y.1
Geppert, H.2
Bajorath, J.3
-
41
-
-
2942700377
-
Comparison of fingerprint-based methods for virtual screening using multiple bioactive reference structures
-
Hert, J.; Willett, P.; Wilton, D.J.; Acklin, P.; Azzaoui, K.; Jacoby, E.; Schuffenhauer, A. Comparison of fingerprint-based methods for virtual screening using multiple bioactive reference structures. J. Chem. Inf. Comput. Sci. 2004, 44, 1177-1185.
-
(2004)
J. Chem. Inf. Comput. Sci
, vol.44
, pp. 1177-1185
-
-
Hert, J.1
Willett, P.2
Wilton, D.J.3
Acklin, P.4
Azzaoui, K.5
Jacoby, E.6
Schuffenhauer, A.7
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