The assembly of individual chaplin peptides from streptomyces coelicolor into functional amyloid fibrils

PLoS ONE

Volumn 6, Issue 4, 2011, Pages

  Sawyer, Elizabeth B ^a   Claessen, Dennis ^b   Haas, Maria ^a   Hurgobin, Bhavna ^a   Gras, Sally L ^a  

^a UNIVERSITY OF MELBOURNE   (Australia)

^b LEIDEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

AMYLOID; BACTERIAL PROTEIN; COELICOLOR HYDROPHOBIC AERIAL PROTEIN D; COELICOLOR HYDROPHOBIC AERIAL PROTEIN E; COELICOLOR HYDROPHOBIC AERIAL PROTEIN F; COELICOLOR HYDROPHOBIC AERIAL PROTEIN G; COELICOLOR HYDROPHOBIC AERIAL PROTEIN H; UNCLASSIFIED DRUG; PEPTIDE; TRIFLUOROACETIC ACID;

ARTICLE; BACTERIAL CELL WALL; BACTERIAL STRAIN; CONTROLLED STUDY; HYDROPHOBICITY; IN VITRO STUDY; IN VIVO STUDY; NONHUMAN; PEPTIDE ANALYSIS; PEPTIDE SYNTHESIS; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN SECONDARY STRUCTURE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STREPTOMYCES COELICOLOR; AMINO ACID SEQUENCE; BACTERIAL SPORE; BIOLOGY; CHEMISTRY; CIRCULAR DICHROISM; INFRARED SPECTROSCOPY; METABOLISM; MOLECULAR GENETICS; OXIDATION REDUCTION REACTION; SOLUTION AND SOLUBILITY; STRUCTURAL HOMOLOGY; ULTRASTRUCTURE; X RAY DIFFRACTION;

BACTERIA (MICROORGANISMS); STREPTOMYCES COELICOLOR;

AMINO ACID SEQUENCE; AMYLOID; BACTERIAL PROTEINS; CIRCULAR DICHROISM; COMPUTATIONAL BIOLOGY; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; PEPTIDES; PROTEIN STRUCTURE, SECONDARY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN; SOLUTIONS; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; SPORES, BACTERIAL; STREPTOMYCES COELICOLOR; STRUCTURAL HOMOLOGY, PROTEIN; TRIFLUOROACETIC ACID; X-RAY DIFFRACTION;

EID: 79955452211     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0018839     Document Type: Article

References (36)

1. Olsen A, Jonsson A, Normark S, (1989) Fibronectin binding mediated by a novel class of surface organelles on Escherichia coll. Nature 338: 652-655.
2. Romero D, Aguilar C, Losick R, Kolter R, (2010) Amyloid fibers provide structural integrity to Bacillus subtilis biofilms. Proceedings of the National Academy of Sciences of the United States of America 107: 2230-2234.
3. Wessels JGH, de Vries OMH, Asgeirsdottir SA, Schuren FHJ, (1991) Hydrophobin Genes Involved in Formation of Aerial Hyphae and Fruit Bodies in Schizophyllum. Plant Cell 3: 793-799.
4. Wosten HAB, de Vocht ML, (2000) Hydrophobins, the fungal coat unravelled. Biochimica et Biophysica Acta 1469: 79-86.
5. Claessen D, Rink R, de Jong W, Siebring J, de Vreugd P, et al. (2003) A novel class of secreted hydrophobic proteins is involved in aerial hyphae formation in Streptomyces coelicolor by forming amyloid-like fibrils. Genes & Development 17: 1714-1726.
6. Elliot MA, Karoonuthaisiri N, Huang J, Bibb MJ, Cohen SN, et al. (2003) The chaplins: a family of hydrophobic cell-surface proteins involved in aerial mycelium formation in Streptomyces coelicolor. Genes & Development 17: 1727-1740.
7. de Jong W, Wösten HAB, Dijkhuizen L, Claessen D, (2009) Attachment of Streptomyces coelicolor is mediated by amyloidal fimbriae that are anchored to the cell surface via cellulose. Molecular Microbiology 73: 1128-1140.
8. Stefani M, (2010) Structural polymorphism of amyloid oligomers and fibrils underlies different fibrillization pathways: immunogenicity and cytotoxicity. Current Protein & Peptide Science 11: 343-354.
9. Xue W, Hellewell A, Gosal W, Homans S, Hewitt E, et al. (2009) Fibril fragmentation enhances amyloid cytotoxicity. Journal of Biological Chemistry 284: 34272.
10. Dobson CM, (1999) Protein misfolding, evolution and disease. Trends in Biochemical Sciences 24: 329-332.
11. Fandrich M, Fletcher MA, Dobson CM, (2001) Amyloid fibrils from muscle myoglobin. Nature 410: 165-166.
12. Guijarro JI, Sunde M, Jones JA, Campbell ID, Dobson CM, (1998) Amyloid fibril formation by an SH3 domain. Proceedings of the National Academy of Sciences of the United States of America 95: 4224-4228-4224-4228.
13. Cherny I, Gazit E, (2008) Amyloids: Not Only Pathological Agents but Also Ordered Nanomaterials. Angewandte Chemie International Edition 47: 4062-4069.
14. Gras SL, (2007) Amyloid Fibrils: From Disease to Design. New Biomaterial Applications for Self-Assembling Cross-β Fibrils. Aust J Chem 60: 333-342.
15. Crilly JF, Russell AB, Cox AR, Cebula DJ, (2008) Designing Multiscale Structures for Desired Properties of Ice Cream. Industrial & Engineering Chemistry Research 47: 6362-6367.
16. Elliot MA, Talbot NJ, (2004) Building filaments in the air: aerial morphogenesis in bacteria and fungi. Current Opinion in Microbiology 7: 594-601.
17. Di Berardo C, Capstick DS, Bibb MJ, Findlay KC, Buttner MJ, et al. (2008) Function and Redundancy of the Chaplin Cell Surface Proteins in Aerial Hypha Formation, Rodlet Assembly, and Viability in Streptomyces coelicolor. J Bacteriol 190: 5879-5889.
18. Claessen D, Stokroos I, Deelstra HJ, Penninga NA, Bormann C, et al. (2004) The formation of the rodlet layer of streptomycetes is the result of the interplay between rodlins and chaplins. Molecular Microbiology 53: 433-443.
19. Myers EW, Miller W, (1988) Optimal alignments in linear space. Comput Appl Biosci 4: 11-17.
20. Cole C, Barber JD, Barton GJ, (2008) The Jpred 3 secondary structure prediction server. Nucl Acids Res 36: W197-201-W197-201.
21. Rost B, Yachdav G, Liu J, (2004) The PredictProtein server. Nucleic Acids Research 32: W321-326-W321-326.
22. Fernandez-Escamilla AM, Rousseau F, Schymkowitz J, Serrano L, (2004) Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins. Nat Biotech 22: 1302-1306.
23. Linding R, Schymkowitz J, Rousseau F, Diella F, Serrano L, (2004) A Comparative Study of the Relationship Between Protein Structure and [beta]-Aggregation in Globular and Intrinsically Disordered Proteins. Journal of Molecular Biology 342: 345-353.
24. Rousseau F, Schymkowitz J, Serrano L, (2006) Protein aggregation and amyloidosis: confusion of the kinds? Current Opinion in Structural Biology 16: 118-126.
25. Li X, Romero P, Rani M, Dunker AK, Obradovic Z, (1999) Predicting protein disorder for N-, C-, and internal regions. Genome Informatics 10: 30-40.
26. Romero P, Obradovic Z, Dunker AK, (1997) Sequence Data Analysis for Long Disordered Regions Prediction in the Calcineurin Family. Genome Informatics 8: 110-124.
27. Romero P, Obradovic Z, Li X, Garner E, Brown C, et al. (2001) Sequence complexity of disordered proteins. Proteins: Structure, Function, Genetics 42: 38-48.
28. Barth A, Zscherp C, (2002) What vibrations tell us about proteins. Quarterly Reviews of Biophysics 35: 369-430.
29. Baumketner A, Shea JE, (2005) Free Energy Landscapes for Amyloidogenic Tetrapeptides Dimerization. Biophysical Journal 89: 1493-1503.
30. Eisenberg D, Weiss RM, Terwilliger TC, (1984) The hydrophobic moment detects periodicity in protein hydrophobicity. Proceedings of the National Academy of Sciences of the United States of America 81: 140-144.
31. Gasteiger E, Hoogland C, Gattiker A, Duvaud S, Wilkins MR, et al. (2005) Protein Identification and Analysis Tools on the ExPASy Server. In: Walker JM, editors. The Proteomics Protocols Handbook Totowa, New Jersey Humana Press pp. 571-607.
32. Sunde M, Serpell LC, Bartlam M, Fraser PE, Pepys MB, et al. (1997) Common core structure of amyloid fibrils by synchrotron X-ray diffraction. Journal of Molecular Biology 273: 729-739.
33. McPhillips TM, McPhillips SE, Chiu HJ, Cohen AE, Deacon AM, et al. (2002) Blu-Ice and the Distributed Control System: software for data acquisition and instrument control at macromolecular crystallography beamlines. Journal of Synchrotron Radiation 9: 401-406.
34. Gras SL, Tickler AK, Squires AM, Devlin GL, Horton MA, et al. (2008) Functionalised amyloid fibrils for roles in cell adhesion. Biomaterials 29: 1553-1562.
35. Squires AM, Devlin GL, Gras SL, Tickler AK, MacPhee CE, et al. (2006) X-ray Scattering Study of the Effect of Hydration on the Cross-β Structure of Amyloid Fibrils. Journal of the American Chemical Society 128: 11738-11739.
36. Keiser T, Bibb MJ, Buttner KF, Chater KF, Hopwood DA, (2000) General Introduction to Actinomycete Biology Norwich, England John Innes Foundation pp. 1-18.