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Volumn 6, Issue 4, 2011, Pages

New insights into the lake chad basin population structure revealed by high-throughput genotyping of mitochondrial dna coding snps

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA; FRESH WATER;

EID: 79955447377     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0018682     Document Type: Article
Times cited : (26)

References (49)
  • 1
    • 79955415260 scopus 로고    scopus 로고
    • The Macro-Sudan belt: towards identifying a linguistic area in northern sub-Saharan Africa;
    • In: Heine B, Nurse D, editors, Cambridge, Cambridge University Press
    • Güldemann T, (2008) The Macro-Sudan belt: towards identifying a linguistic area in northern sub-Saharan Africa; In: Heine B, Nurse D, editors. Cambridge Cambridge University Press.
    • (2008)
    • Güldemann, T.1
  • 2
    • 35548960058 scopus 로고    scopus 로고
    • Co-introgression of Y-chromosome haplogroups and the sickle cell gene across Africa's Sahel
    • Bereir RE, Hassan HY, Salih NA, Underhill PA, Cavalli-Sforza LL, et al. (2007) Co-introgression of Y-chromosome haplogroups and the sickle cell gene across Africa's Sahel. Eur J Hum Genet 15: 1183-1185.
    • (2007) Eur J Hum Genet , vol.15 , pp. 1183-1185
    • Bereir, R.E.1    Hassan, H.Y.2    Salih, N.A.3    Underhill, P.A.4    Cavalli-Sforza, L.L.5
  • 3
    • 34249949419 scopus 로고    scopus 로고
    • A bidirectional corridor in the Sahel-Sudan belt and the distinctive features of the Chad Basin populations: a history revealed by the mitochondrial DNA genome
    • Černý V, Salas A, Hájek M, Žaloudková M, Brdička R, (2007) A bidirectional corridor in the Sahel-Sudan belt and the distinctive features of the Chad Basin populations: a history revealed by the mitochondrial DNA genome. Ann Hum Genet 71: 433-452.
    • (2007) Ann Hum Genet , vol.71 , pp. 433-452
    • Černý, V.1    Salas, A.2    Hájek, M.3    Žaloudková, M.4    Brdička, R.5
  • 4
    • 66249116333 scopus 로고    scopus 로고
    • The genetic structure and history of Africans and African Americans
    • Tishkoff SA, Reed FA, Friedlaender FR, Ehret C, Ranciaro A, et al. (2009) The genetic structure and history of Africans and African Americans. Science 324: 1035-1044.
    • (2009) Science , vol.324 , pp. 1035-1044
    • Tishkoff, S.A.1    Reed, F.A.2    Friedlaender, F.R.3    Ehret, C.4    Ranciaro, A.5
  • 5
    • 78649724301 scopus 로고    scopus 로고
    • The future is an ancient lake: traditional knowledge, biodiversity, and genetic resources for food and agriculture in Lake Chad Basin ecosystems
    • Food and Agriculture Organization of the United Nations., and FAO Inter-Departmental Working Group on Biological Diversity for Food and Agriculture
    • Batello C, Marzot M, Touré AH, Kenmore PE, (2004) The future is an ancient lake: traditional knowledge, biodiversity, and genetic resources for food and agriculture in Lake Chad Basin ecosystems. Food and Agriculture Organization of the United Nations., and FAO Inter-Departmental Working Group on Biological Diversity for Food and Agriculture.
    • (2004)
    • Batello, C.1    Marzot, M.2    Touré, A.H.3    Kenmore, P.E.4
  • 6
    • 44049087992 scopus 로고    scopus 로고
    • Climate-driven ecosystem succession in the Sahara: the past 6000 years
    • Kropelin S, Verschuren D, Lezine AM, Eggermont H, Cocquyt C, et al. (2008) Climate-driven ecosystem succession in the Sahara: the past 6000 years. Science 320: 765-768.
    • (2008) Science , vol.320 , pp. 765-768
    • Kropelin, S.1    Verschuren, D.2    Lezine, A.M.3    Eggermont, H.4    Cocquyt, C.5
  • 9
    • 1542314304 scopus 로고    scopus 로고
    • The African diaspora: mitochondrial DNA and the Atlantic slave trade
    • Salas A, Richards M, Lareu MV, Scozzari R, Coppa A, et al. (2004) The African diaspora: mitochondrial DNA and the Atlantic slave trade. Am J Hum Genet 74: 454-465.
    • (2004) Am J Hum Genet , vol.74 , pp. 454-465
    • Salas, A.1    Richards, M.2    Lareu, M.V.3    Scozzari, R.4    Coppa, A.5
  • 10
    • 79955381674 scopus 로고    scopus 로고
    • The archaeogenetics of the dispersals of the Bantu-speaking peoples
    • In: Jones M, editors, Cambridge, McDonald Institute for Archaeological Research
    • Richards M, Macaulay V, Hill C, Carracedo Á, Salas A, (2004) The archaeogenetics of the dispersals of the Bantu-speaking peoples. In: Jones M, editors. Studies in honour of Colin Renfrew Cambridge McDonald Institute for Archaeological Research pp. 1363-1349.
    • (2004) Studies in Honour of Colin Renfrew , pp. 1363-1349
    • Richards, M.1    Macaulay, V.2    Hill, C.3    Carracedo, Á.4    Salas, A.5
  • 12
    • 5044247064 scopus 로고    scopus 로고
    • Insights into the western Bantu dispersal: mtDNA lineage analysis in Angola
    • Plaza S, Salas A, Calafell F, Corte-Real F, Bertranpetit J, et al. (2004) Insights into the western Bantu dispersal: mtDNA lineage analysis in Angola. Hum Genet 115: 439-447.
    • (2004) Hum Genet , vol.115 , pp. 439-447
    • Plaza, S.1    Salas, A.2    Calafell, F.3    Corte-Real, F.4    Bertranpetit, J.5
  • 13
    • 6344237725 scopus 로고    scopus 로고
    • Ethiopian mitochondrial DNA heritage: tracking gene flow across and around the gate of tears
    • Kivisild T, Reidla M, Metspalu E, Rosa A, Brehm A, et al. (2004) Ethiopian mitochondrial DNA heritage: tracking gene flow across and around the gate of tears. Am J Hum Genet 75: 752-770.
    • (2004) Am J Hum Genet , vol.75 , pp. 752-770
    • Kivisild, T.1    Reidla, M.2    Metspalu, E.3    Rosa, A.4    Brehm, A.5
  • 16
    • 40349101864 scopus 로고    scopus 로고
    • Maternal traces of deep common ancestry and asymmetric gene flow between Pygmy hunter-gatherers and Bantu-speaking farmers
    • Quintana-Murci L, Quach H, Harmant C, Luca F, Massonnet B, et al. (2008) Maternal traces of deep common ancestry and asymmetric gene flow between Pygmy hunter-gatherers and Bantu-speaking farmers. Proc Natl Acad Sci U S A 105: 1596-1601.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 1596-1601
    • Quintana-Murci, L.1    Quach, H.2    Harmant, C.3    Luca, F.4    Massonnet, B.5
  • 17
    • 29244447789 scopus 로고    scopus 로고
    • The identification of single nucleotide polymorphisms in the entire mitochondrial genome to increase the forensic discrimination of common HV1/HV2 types in the Caucasian population
    • Washington, The George Washington University
    • Coble M, (2004) The identification of single nucleotide polymorphisms in the entire mitochondrial genome to increase the forensic discrimination of common HV1/HV2 types in the Caucasian population. Washington The George Washington University.
    • (2004)
    • Coble, M.1
  • 19
    • 34248158993 scopus 로고    scopus 로고
    • Coding region mitochondrial DNA SNPs: targeting East Asian and Native American haplogroups
    • Álvarez-Iglesias V, Jaime JC, Carracedo Á, Salas A, (2007) Coding region mitochondrial DNA SNPs: targeting East Asian and Native American haplogroups. Forensic Sci Int Genet 1: 44-55.
    • (2007) Forensic Sci Int Genet , vol.1 , pp. 44-55
    • Álvarez-Iglesias, V.1    Jaime, J.C.2    Carracedo, Á.3    Salas, A.4
  • 20
    • 64549148932 scopus 로고    scopus 로고
    • New population and phylogenetic features of the internal variation within mitochondrial DNA macro-haplogroup R0
    • Álvarez-Iglesias V, Mosquera-Miguel A, Cerezo M, Quintáns B, Zarrabeitia MT, et al. (2009) New population and phylogenetic features of the internal variation within mitochondrial DNA macro-haplogroup R0. PLoS ONE 4: e5112.
    • (2009) PLoS ONE , vol.4
    • Álvarez-Iglesias, V.1    Mosquera-Miguel, A.2    Cerezo, M.3    Quintáns, B.4    Zarrabeitia, M.T.5
  • 21
    • 1242271269 scopus 로고    scopus 로고
    • Typing of mitochondrial DNA coding region SNPs of forensic and anthropological interest using SNaPshot minisequencing
    • Quintáns B, Álvarez-Iglesias V, Salas A, Phillips C, Lareu MV, et al. (2004) Typing of mitochondrial DNA coding region SNPs of forensic and anthropological interest using SNaPshot minisequencing. Forensic Sci Int 140: 251-257.
    • (2004) Forensic Sci Int , vol.140 , pp. 251-257
    • Quintáns, B.1    Álvarez-Iglesias, V.2    Salas, A.3    Phillips, C.4    Lareu, M.V.5
  • 22
    • 70649088117 scopus 로고    scopus 로고
    • Applications of MALDI-TOF MS to large-scale human mtDNA population-based studies
    • Cerezo M, Černý V, Carracedo Á, Salas A, (2009) Applications of MALDI-TOF MS to large-scale human mtDNA population-based studies. Electrophoresis 30: 3665-3673.
    • (2009) Electrophoresis , vol.30 , pp. 3665-3673
    • Cerezo, M.1    Černý, V.2    Carracedo, Á.3    Salas, A.4
  • 23
    • 33845686338 scopus 로고    scopus 로고
    • The mtDNA legacy of the Levantine early Upper Palaeolithic in Africa
    • Olivieri A, Achilli A, Pala M, Battaglia V, Fornarino S, et al. (2006) The mtDNA legacy of the Levantine early Upper Palaeolithic in Africa. Science 314: 1767-1770.
    • (2006) Science , vol.314 , pp. 1767-1770
    • Olivieri, A.1    Achilli, A.2    Pala, M.3    Battaglia, V.4    Fornarino, S.5
  • 24
    • 64049089255 scopus 로고    scopus 로고
    • Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation
    • van Oven M, Kayser M, (2009) Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum Mutat 30: E386-394.
    • (2009) Hum Mutat , vol.30
    • van Oven, M.1    Kayser, M.2
  • 25
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J, (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 26
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data
    • Excoffier L, Smouse PE, Quattro JM, (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 27
    • 33645108873 scopus 로고    scopus 로고
    • LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters
    • Kuhner MK, (2006) LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters. Bioinformatics 22: 768-770.
    • (2006) Bioinformatics , vol.22 , pp. 768-770
    • Kuhner, M.K.1
  • 28
    • 45849154165 scopus 로고    scopus 로고
    • jModelTest: phylogenetic model averaging
    • Posada D, (2008) jModelTest: phylogenetic model averaging. Mol Biol Evol 25: 1253-1256.
    • (2008) Mol Biol Evol , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 29
    • 33846625058 scopus 로고    scopus 로고
    • Associating mitochondrial DNA variation with complex traits
    • author reply 382-373
    • Elson JL, Majamaa K, Howell N, Chinnery PF, (2007) Associating mitochondrial DNA variation with complex traits. Am J Hum Genet 80: 378-382; author reply 382-373.
    • (2007) Am J Hum Genet , vol.80 , pp. 378-382
    • Elson, J.L.1    Majamaa, K.2    Howell, N.3    Chinnery, P.F.4
  • 30
    • 44349092405 scopus 로고    scopus 로고
    • Regional differences in the distribution of the sub-Saharan, West Eurasian, and South Asian mtDNA lineages in Yemen
    • Černý V, Mulligan CJ, Rídl J, Žaloudková M, Edens CM, et al. (2008) Regional differences in the distribution of the sub-Saharan, West Eurasian, and South Asian mtDNA lineages in Yemen. Am J Phys Anthropol 136: 128-137.
    • (2008) Am J Phys Anthropol , vol.136 , pp. 128-137
    • Černý, V.1    Mulligan, C.J.2    Rídl, J.3    Žaloudková, M.4    Edens, C.M.5
  • 31
    • 63449089654 scopus 로고    scopus 로고
    • Out of Arabia-the settlement of island Soqotra as revealed by mitochondrial and Y chromosome genetic diversity
    • Černý V, Pereira L, Kujanová M, Vašíková A, Hájek M, et al. (2009) Out of Arabia-the settlement of island Soqotra as revealed by mitochondrial and Y chromosome genetic diversity. Am J Phys Anthropol 138: 439-447.
    • (2009) Am J Phys Anthropol , vol.138 , pp. 439-447
    • Černý, V.1    Pereira, L.2    Kujanová, M.3    Vašíková, A.4    Hájek, M.5
  • 32
    • 78650467989 scopus 로고    scopus 로고
    • Internal diversification of mitochondrial haplogroup R0a reveals post-Last Glacial Maximum demographic expansions in South Arabia
    • Černý V, Mulligan CJ, Fernandes V, Silva NM, Alshamali F, et al. (2010) Internal diversification of mitochondrial haplogroup R0a reveals post-Last Glacial Maximum demographic expansions in South Arabia. Mol Biol Evol 28: 71-78.
    • (2010) Mol Biol Evol , vol.28 , pp. 71-78
    • Černý, V.1    Mulligan, C.J.2    Fernandes, V.3    Silva, N.M.4    Alshamali, F.5
  • 33
    • 66749153836 scopus 로고    scopus 로고
    • Correcting for purifying selection: an improved human mitochondrial molecular clock
    • Soares P, Ermini L, Thomson N, Mormina M, Rito T, et al. (2009) Correcting for purifying selection: an improved human mitochondrial molecular clock. Am J Hum Genet 84: 740-759.
    • (2009) Am J Hum Genet , vol.84 , pp. 740-759
    • Soares, P.1    Ermini, L.2    Thomson, N.3    Mormina, M.4    Rito, T.5
  • 34
    • 77954921564 scopus 로고    scopus 로고
    • Linking the sub-Saharan and West Eurasian gene pools: maternal and paternal heritage of the Tuareg nomads from the African Sahel
    • Pereira L, Černý V, Cerezo M, Silva NM, Hájek M, et al. (2010) Linking the sub-Saharan and West Eurasian gene pools: maternal and paternal heritage of the Tuareg nomads from the African Sahel. Eur J Hum Genet 18: 915-923.
    • (2010) Eur J Hum Genet , vol.18 , pp. 915-923
    • Pereira, L.1    Černý, V.2    Cerezo, M.3    Silva, N.M.4    Hájek, M.5
  • 35
    • 0032443538 scopus 로고    scopus 로고
    • Mitochondrial DNA analysis of northwest African populations reveals genetic exchanges with European, near-eastern, and sub-Saharan populations
    • Rando JC, Pinto F, González AM, Hernández M, Larruga JM, et al. (1998) Mitochondrial DNA analysis of northwest African populations reveals genetic exchanges with European, near-eastern, and sub-Saharan populations. Ann Hum Genet 62 (Pt 6): 531-550.
    • (1998) Ann Hum Genet , vol.62 , Issue.Pt 6 , pp. 531-550
    • Rando, J.C.1    Pinto, F.2    González, A.M.3    Hernández, M.4    Larruga, J.M.5
  • 37
    • 6344259029 scopus 로고    scopus 로고
    • Mitochondrial genome variation in eastern Asia and the peopling of Japan
    • Tanaka M, Cabrera VM, González AM, Larruga JM, Takeyasu T, et al. (2004) Mitochondrial genome variation in eastern Asia and the peopling of Japan. Genome Res 14: 1832-1850.
    • (2004) Genome Res , vol.14 , pp. 1832-1850
    • Tanaka, M.1    Cabrera, V.M.2    González, A.M.3    Larruga, J.M.4    Takeyasu, T.5
  • 38
    • 18344366125 scopus 로고    scopus 로고
    • Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences from the major African, Asian, and European haplogroups
    • Herrnstadt C, Elson JL, Fahy E, Preston G, Turnbull DM, et al. (2002) Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences from the major African, Asian, and European haplogroups. Am J Hum Genet 70: 1152-1171.
    • (2002) Am J Hum Genet , vol.70 , pp. 1152-1171
    • Herrnstadt, C.1    Elson, J.L.2    Fahy, E.3    Preston, G.4    Turnbull, D.M.5
  • 39
    • 33244457956 scopus 로고    scopus 로고
    • The role of selection in the evolution of human mitochondrial genomes
    • Kivisild T, Shen P, Wall DP, Do B, Sung R, et al. (2006) The role of selection in the evolution of human mitochondrial genomes. Genetics 172: 373-387.
    • (2006) Genetics , vol.172 , pp. 373-387
    • Kivisild, T.1    Shen, P.2    Wall, D.P.3    Do, B.4    Sung, R.5
  • 41
    • 29244440850 scopus 로고    scopus 로고
    • Effective strategies for forensic analysis in the mitochondrial DNA coding region
    • Coble MD, Vallone PM, Just RS, Diegoli TM, Smith BC, et al. (2006) Effective strategies for forensic analysis in the mitochondrial DNA coding region. Int J Legal Med 120: 27-32.
    • (2006) Int J Legal Med , vol.120 , pp. 27-32
    • Coble, M.D.1    Vallone, P.M.2    Just, R.S.3    Diegoli, T.M.4    Smith, B.C.5
  • 43
    • 46149121025 scopus 로고    scopus 로고
    • The phylogeny of the four pan-American MtDNA haplogroups: implications for evolutionary and disease studies
    • Achilli A, Perego UA, Bravi CM, Coble MD, Kong Q-P, et al. (2008) The phylogeny of the four pan-American MtDNA haplogroups: implications for evolutionary and disease studies. PLoS ONE 3: e1764.
    • (2008) PLoS ONE , vol.3
    • Achilli, A.1    Perego, U.A.2    Bravi, C.M.3    Coble, M.D.4    Kong, Q.-P.5
  • 44
    • 66749151442 scopus 로고    scopus 로고
    • Mitochondrial haplogroup U5b3: a distant echo of the epipaleolithic in Italy and the legacy of the early Sardinians
    • Pala M, Achilli A, Olivieri A, Kashani BH, Perego UA, et al. (2009) Mitochondrial haplogroup U5b3: a distant echo of the epipaleolithic in Italy and the legacy of the early Sardinians. Am J Hum Genet 84: 814-821.
    • (2009) Am J Hum Genet , vol.84 , pp. 814-821
    • Pala, M.1    Achilli, A.2    Olivieri, A.3    Kashani, B.H.4    Perego, U.A.5
  • 45
    • 58549117665 scopus 로고    scopus 로고
    • Distinctive Paleo-Indian migration routes from Beringia marked by two rare mtDNA haplogroups
    • Perego UA, Achilli A, Angerhofer N, Accetturo M, Pala M, et al. (2009) Distinctive Paleo-Indian migration routes from Beringia marked by two rare mtDNA haplogroups. Curr Biol 19: 1-8.
    • (2009) Curr Biol , vol.19 , pp. 1-8
    • Perego, U.A.1    Achilli, A.2    Angerhofer, N.3    Accetturo, M.4    Pala, M.5
  • 46
    • 5044241432 scopus 로고    scopus 로고
    • The phylogeography of mitochondrial DNA haplogroup L3g in Africa and the Atlantic slave trade
    • Salas A, Torroni A, Richards M, Quintana-Murci L, Hill C, et al. (2004) The phylogeography of mitochondrial DNA haplogroup L3g in Africa and the Atlantic slave trade. Am J Hum Genet 75: 524-526.
    • (2004) Am J Hum Genet , vol.75 , pp. 524-526
    • Salas, A.1    Torroni, A.2    Richards, M.3    Quintana-Murci, L.4    Hill, C.5
  • 47
    • 77956296353 scopus 로고    scopus 로고
    • A reduced number of mtSNPs saturates mitochondrial DNA haplotype diversity of worldwide population groups
    • Salas A, Amigo J, (2010) A reduced number of mtSNPs saturates mitochondrial DNA haplotype diversity of worldwide population groups. PLoS One 5: e10218.
    • (2010) PLoS One , vol.5
    • Salas, A.1    Amigo, J.2
  • 49
    • 0032868141 scopus 로고    scopus 로고
    • Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA
    • Andrews RM, Kubacka I, Chinnery PF, Lightowlers RN, Turnbull DM, et al. (1999) Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat Genet 23: 147.
    • (1999) Nat Genet , vol.23 , pp. 147
    • Andrews, R.M.1    Kubacka, I.2    Chinnery, P.F.3    Lightowlers, R.N.4    Turnbull, D.M.5


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