Longispora fulva sp. nov., isolated from a forest soil, and emended description of the genus Longispora

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 4, 2011, Pages 804-809

  Shiratori Takano, Hatsumi ^a   Yamada, Koji ^a   Beppu, Teruhiko ^a   Ueda, Kenji ^a  

^a NIHON UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; CARDIOLIPIN; DEXTRO GLUTAMIC ACID; GALACTOSE; GLYCINE; GLYCOLIPID; HYDROXYPHOSPHATIDYLETHANOLAMINE; MANNOSE; MENAQUINONE; PEPTIDOGLYCAN; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLINOSITOL; RHAMNOSE; RIBOSE; RNA 16S; UNCLASSIFIED DRUG; XYLOSE;

ACTINOBACTERIA; AMINO ACID SUBSTITUTION; ARTICLE; BACTERIAL CELL WALL; BACTERIAL SPORE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; DNA BASE COMPOSITION; FATTY ACID ANALYSIS; FOREST SOIL; LONGISPORA FULVA; MICROMONOSPORACEAE; MORPHOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SURFACE PROPERTY;

AMINO ACIDS; BASE COMPOSITION; CARBOHYDRATES; CELL WALL; CLUSTER ANALYSIS; CYTOPLASM; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; JAPAN; MICROMONOSPORACEAE; MOLECULAR SEQUENCE DATA; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPORES, BACTERIAL; TREES; VITAMIN K 2;

LONGISPORA; MICROMONOSPORACEAE;

EID: 79955440221     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.023531-0     Document Type: Article

References (32)

1. Bartholomew, J. W. & Mittwer, T. (1952). The Gram stain. Bacteriol Rev 16, 1-29.
2. Becker, B., Lechevalier, M. P. & Lechevalier, H. A. (1965). Chemical composition of cell-wall preparations from strains of various formgenera of aerobic actinomycetes. Appl Microbiol 13, 236-243.
3. Chiba, H., Inokoshi, J., Okamoto, M., Asanuma, S., Matsuzaki, K., Iwama, M., Mizumoto, K., Tanaka, H., Oheda, M. & other authors (2001). Actinohivin, a novel anti-HIV protein from an actinomycete that inhibits syncytium formation: isolation, characterization, and biological activities. Biochem Biophys Res Commun 282, 595-601.
4. Chiba, H., Inokoshi, J., Nakashima, H., Omura, S. & Tanaka, H. (2004). Actinohivin, a novel anti-human immunodeficiency virus protein from an actinomycete, inhibits viral entry to cells by binding high-mannose type sugar chains of gp120. Biochem Biophys Res Commun 316, 203-210.
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
7. Galtier, N., Gouy, M. & Gautier, C. (1996). SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12, 543-548.
8. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. (1974). Nocardia coelica, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
9. Hamada, M. (2001). Cultural, physiological and biochemical characteristics in actinomycetes. In Identification Manual of Actinomycetes, 1st edn, Chapter 2, pp. 37-47. Edited by S. Miyadoh, M. Hamada, K. Hotta, T. Kudo, A. Seino, K. Suzuki & A. Yokota. Tokyo: Business Center for Academic Societies Japan.
10. Harper, J. J. & Davis, G. H. G. (1979). Two-dimensional thin-layer chromatography for amino acid analysis of bacterial cell walls. Int J Syst Bacteriol 29, 56-58.
11. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
12. Hayakawa, M. & Nonomura, H. (1989). A new method for the intensive isolation of actinomycetes from soil. Actinomycetologica 3, 95-104.
13. Hopwood, D. A., Bibb, M. J., Chater, K. F., Kieser, T., Bruton, C. J., Kieser, H. M., Lydiate, D. J., Smith, C. P., Ward, J. M. & Schrempf, H. (1985). Preparation of chromosomal, plasmid and phage DNA. In Genetic Manipulation of Streptomyces. A Laboratory Manual, pp. 72-74. Edited by D. A. Hopwood, M. J. Bibb, K. F. Chater, T. Kieser, C. J. Bruton, H. M. Kieser, D. J. Lydiate, C. P. Smith, J. M. Ward & H. Schrempf. Norwich: John Innes Foundation.
14. Kawamoto, I., Oka, T. & Nara, T. (1981). Cell wall composition of Micromonospora olivoasterospora, Micromonospora sagamiensis, and related organisms. J Bacteriol 146, 527-534.
15. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
16. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
17. Kroppenstedt, R. M. (1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics (Society for Applied Bacteriology Technical Series vol. 20), pp. 173-199. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
18. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
19. Matsumoto, A., Takahashi, Y., Shinose, M., Seino, A., Iwai, Y. & Omura, S. (2003). Longispora albida gen. nov., sp. nov., a novel genus of the family Micromonosporaceae. Int J Syst Evol Microbiol 53, 1553-1559.
20. Munsell Color Co. Inc. (1976). Munsell Book of Color-Matte Finish Collection. Baltimore: Munsell Color Co., Inc.
21. Nishijima, M., Araki-Sakai, M. & Sano, H. (1997). Identification of isoprenoid quinones by frit-FAB liquid chromatography-mass spectrometry for the chemotaxonomy of microorganisms. J Microbiol Methods 28, 113-122.
22. Rayner R. W. (1970). A Mycological Colour Chart. Kew, UK: Commonwealth Mycological Institute & British Mycological Society.
23. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
24. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
25. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
26. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S ribosomal-RNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
27. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
28. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
29. Tomiyasu, I. (1982). Mycolic acid composition and thermally adaptative changes in Nocardia asteroides. J Bacteriol 151, 828-837.
30. Uchida, K. & Aida, K. (1977). Acyl type of bacterial cell wall: its simple identification by a colorimetric method. J Gen Appl Microbiol 23, 249-260.
31. 2 and implications of their potential diversity. Appl Environ Microbiol 74, 4535-4538.
32. Wang, X., Hoefel, D., Saint, C. P., Monis, P. T. & Jin, B. (2007). The isolation and microbial community analysis of hydrogen producing bacteria from activated sludge. J Appl Microbiol 103, 1415-1423.