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Volumn 65, Issue 5, 2011, Pages 1413-1427

A Case-By-Case Evolutionary Analysis Of Four Imprinted Retrogenes

Author keywords

Epigenetics; Gene expression; Imprinting; Molecular evolution; Retrogene

Indexed keywords

INOSITOL 1,4,5 TRISPHOSPHATE 5 PHOSPHATASE; INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE; MONOCARBOXYLATE TRANSPORTER; NAP1L5 PROTEIN, MOUSE; NERVE PROTEIN; NUCLEAR PROTEIN; PHOSPHATASE; RIBONUCLEOPROTEIN; SLC16A7 PROTEIN, MOUSE; U2AF1 RS1 PROTEIN, MOUSE; U2AF1-RS1 PROTEIN, MOUSE;

EID: 79955165539     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1111/j.1558-5646.2010.01213.x     Document Type: Article
Times cited : (24)

References (69)
  • 1
    • 45849117530 scopus 로고    scopus 로고
    • Positive selection and expression divergence following gene duplication in the sunflower CYCLOIDEA gene family
    • Chapman, M. A., J. H. Leebens-Mack, and J. M. Burke 2008. Positive selection and expression divergence following gene duplication in the sunflower CYCLOIDEA gene family. Mol. Biol. Evol. 25:1260-1273.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1260-1273
    • Chapman, M.A.1    Leebens-Mack, J.H.2    Burke, J.M.3
  • 5
    • 56549119570 scopus 로고    scopus 로고
    • Turning a hobby into a job: how duplicated genes find new functions
    • Conant, G. C., and K. H. Wolfe 2008. Turning a hobby into a job: how duplicated genes find new functions. Nat. Rev. Genet. 9:938-950.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 938-950
    • Conant, G.C.1    Wolfe, K.H.2
  • 6
    • 33847611887 scopus 로고    scopus 로고
    • Not born equal: increased rate asymmetry in relocated and retrotransposed rodent gene duplicates
    • Cusack, B. P., and K. H. Wolfe 2007. Not born equal: increased rate asymmetry in relocated and retrotransposed rodent gene duplicates. Mol. Biol. Evol. 24:679-686.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 679-686
    • Cusack, B.P.1    Wolfe, K.H.2
  • 7
    • 79955152743 scopus 로고    scopus 로고
    • dbEST.
  • 8
    • 1642475221 scopus 로고    scopus 로고
    • Extensive gene traffic on the mammalian X chromosome
    • Emerson, J. J., H. Kaessmann, E. Betran, and M. Long 2004. Extensive gene traffic on the mammalian X chromosome. Science 303:537-540.
    • (2004) Science , vol.303 , pp. 537-540
    • Emerson, J.J.1    Kaessmann, H.2    Betran, E.3    Long, M.4
  • 9
    • 79955138256 scopus 로고    scopus 로고
    • Ensembl.
    • Ensembl.
  • 10
    • 0034079713 scopus 로고    scopus 로고
    • Human LINE retrotransposons generate processed pseudogenes
    • Esnault, C., J. Maestre, and T. Heidmann 2000. Human LINE retrotransposons generate processed pseudogenes. Nat. Genet. 24:363-367.
    • (2000) Nat. Genet. , vol.24 , pp. 363-367
    • Esnault, C.1    Maestre, J.2    Heidmann, T.3
  • 11
    • 34250662288 scopus 로고    scopus 로고
    • An epigenetic approach to cancer etiology
    • Feinberg, A. P. 2007. An epigenetic approach to cancer etiology. Cancer J. 13:70-74.
    • (2007) Cancer J. , vol.13 , pp. 70-74
    • Feinberg, A.P.1
  • 12
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • Force, A., M. Lynch, F. B. Pickett, A. Amores, Y. L. Yan, and J. Postlethwait 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151:1531-1545.
    • (1999) Genetics , vol.151 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.B.3    Amores, A.4    Yan, Y.L.5    Postlethwait, J.6
  • 13
    • 33847042378 scopus 로고    scopus 로고
    • The evolutionary fate of recently duplicated retrogenes in mice
    • Gayral, P., P. Caminade, P. Boursot, and N. Galtier 2007. The evolutionary fate of recently duplicated retrogenes in mice. J. Evol. Biol. 20:617-626.
    • (2007) J. Evol. Biol. , vol.20 , pp. 617-626
    • Gayral, P.1    Caminade, P.2    Boursot, P.3    Galtier, N.4
  • 14
    • 23744512515 scopus 로고    scopus 로고
    • The Mct-1 oncogene product impairs cell cycle checkpoint control and transforms human mammary epithelial cells
    • Hsu, H. L., B. Shi, and R. B. Gartenhaus 2005. The Mct-1 oncogene product impairs cell cycle checkpoint control and transforms human mammary epithelial cells. Oncogene 24:4956-4964.
    • (2005) Oncogene , vol.24 , pp. 4956-4964
    • Hsu, H.L.1    Shi, B.2    Gartenhaus, R.B.3
  • 16
    • 34748817463 scopus 로고    scopus 로고
    • Looking for Darwin in all the wrong places: the misguided quest for positive selection at the nucleotide sequence level
    • Hughes, A. L. 2007. Looking for Darwin in all the wrong places: the misguided quest for positive selection at the nucleotide sequence level. Heredity 99:364-373.
    • (2007) Heredity , vol.99 , pp. 364-373
    • Hughes, A.L.1
  • 17
    • 51649108111 scopus 로고    scopus 로고
    • The origin of adaptive phenotypes
    • Hughes, A. L. 2008. The origin of adaptive phenotypes. Proc. Natl. Acad. Sci. USA 105:13193-13194.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 13193-13194
    • Hughes, A.L.1
  • 18
  • 19
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones, D. T., W. R. Taylor, and J. M. Thornton 1992. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8:275-282.
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 20
    • 57749177443 scopus 로고    scopus 로고
    • RNA-based gene duplication: mechanistic and evolutionary insights
    • Kaessmann, H., N. Vinckenbosch, and M. Long 2009. RNA-based gene duplication: mechanistic and evolutionary insights. Nat. Rev. Genet. 10:19-31.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 19-31
    • Kaessmann, H.1    Vinckenbosch, N.2    Long, M.3
  • 21
    • 1942452749 scopus 로고    scopus 로고
    • Proof and evolutionary analysis of ancient genome duplication in the yeastSaccharomyces cerevisiae
    • Kellis, M., B. W. Birren, and E. S. Lander 2004. Proof and evolutionary analysis of ancient genome duplication in the yeastSaccharomyces cerevisiae. Nature 428:617-624.
    • (2004) Nature , vol.428 , pp. 617-624
    • Kellis, M.1    Birren, B.W.2    Lander, E.S.3
  • 22
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent, W. J. 2002. BLAT-the BLAST-like alignment tool. Genome Res. 12:656-664.
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 23
    • 0035823011 scopus 로고    scopus 로고
    • A novel peptide recognition mode revealed by the X-ray structure of a core U2AF35/U2AF65 heterodimer
    • Kielkopf, C. L., N. A. Rodionova, M. R. Green, and S. K. Burley 2001. A novel peptide recognition mode revealed by the X-ray structure of a core U2AF35/U2AF65 heterodimer. Cell 106:595-605.
    • (2001) Cell , vol.106 , pp. 595-605
    • Kielkopf, C.L.1    Rodionova, N.A.2    Green, M.R.3    Burley, S.K.4
  • 24
    • 0034889978 scopus 로고    scopus 로고
    • A possible meiotic function of the peculiar patterns of gene expression in mammalian spermatogenic cells
    • Kleene, K. C. 2001. A possible meiotic function of the peculiar patterns of gene expression in mammalian spermatogenic cells. Mech. Dev. 106:3-23.
    • (2001) Mech. Dev. , vol.106 , pp. 3-23
    • Kleene, K.C.1
  • 26
    • 33751414256 scopus 로고    scopus 로고
    • Tracking the connection between evolutionary and functional shifts using the fungal lipase/feruloyl esterase A family
    • Levasseur, A., P. Gouret, L. Lesage-Meessen, M. Asther, E. Record, and P. Pontarotti 2006. Tracking the connection between evolutionary and functional shifts using the fungal lipase/feruloyl esterase A family. BMC Evol. Biol. 6:92.
    • (2006) BMC Evol. Biol. , vol.6 , pp. 92
    • Levasseur, A.1    Gouret, P.2    Lesage-Meessen, L.3    Asther, M.4    Record, E.5    Pontarotti, P.6
  • 28
    • 44949114061 scopus 로고    scopus 로고
    • Characterizing positive and negative selection and their phylogenetic effects
    • Massey, S. E., A. Churbanov, S. Rastogi, and D. A. Liberles 2008. Characterizing positive and negative selection and their phylogenetic effects. Gene 418:22-26.
    • (2008) Gene , vol.418 , pp. 22-26
    • Massey, S.E.1    Churbanov, A.2    Rastogi, S.3    Liberles, D.A.4
  • 29
    • 58549083533 scopus 로고    scopus 로고
    • Targeted suppression of Mct-1 attenuates the malignant phenotype through a translational mechanism
    • Mazan-Mamczarz, K., P. Hagner, B. Dai, S. Corl, Z. Liu, and R. B. Gartenhaus 2009. Targeted suppression of Mct-1 attenuates the malignant phenotype through a translational mechanism. Leuk. Res. 33:474-482.
    • (2009) Leuk. Res. , vol.33 , pp. 474-482
    • Mazan-Mamczarz, K.1    Hagner, P.2    Dai, B.3    Corl, S.4    Liu, Z.5    Gartenhaus, R.B.6
  • 30
    • 58149160036 scopus 로고    scopus 로고
    • Unwitting hosts fall victim to imprinting
    • McCole, R. B., and R. J. Oakey 2008. Unwitting hosts fall victim to imprinting. Epigenetics 3:258-260.
    • (2008) Epigenetics , vol.3 , pp. 258-260
    • McCole, R.B.1    Oakey, R.J.2
  • 34
    • 79955149285 scopus 로고    scopus 로고
    • NCBI Trace Archive.
    • NCBI Trace Archive.
  • 41
    • 0035064946 scopus 로고    scopus 로고
    • Evolutionary rates of duplicate genes in fish and mammals
    • Robinson-Rechavi, M., and V. Laudet 2001. Evolutionary rates of duplicate genes in fish and mammals. Mol. Biol. Evol. 18:681-683.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 681-683
    • Robinson-Rechavi, M.1    Laudet, V.2
  • 42
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist, F., and J. P. Huelsenbeck 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 43
    • 34047199274 scopus 로고    scopus 로고
    • The evolution of seminal ribonuclease: pseudogene reactivation or multiple gene inactivation events
    • Sassi, S. O., E. L. Braun, and S. A. Benner 2007. The evolution of seminal ribonuclease: pseudogene reactivation or multiple gene inactivation events Mol. Biol. Evol. 24:1012-1024.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1012-1024
    • Sassi, S.O.1    Braun, E.L.2    Benner, S.A.3
  • 44
    • 0030179993 scopus 로고    scopus 로고
    • Transcriptional promiscuity in testes
    • Schmidt, E. E. 1996. Transcriptional promiscuity in testes. Curr. Biol. 6:768-769.
    • (1996) Curr. Biol. , vol.6 , pp. 768-769
    • Schmidt, E.E.1
  • 45
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt, H. A., K. Strimmer, M. Vingron, and A. von Haeseler 2002. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-504.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 47
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: for assessing the confidence of phylogenetic tree selection
    • Shimodaira, H., and M. Hasegawa 2001. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17:1246-1247.
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 49
    • 0037396735 scopus 로고    scopus 로고
    • Identification of novel imprinted genes in a genome-wide screen for maternal methylation
    • Smith, R. J., W. Dean, G. Konfortova, and G. Kelsey 2003. Identification of novel imprinted genes in a genome-wide screen for maternal methylation. Genome Res. 13:558-569.
    • (2003) Genome Res. , vol.13 , pp. 558-569
    • Smith, R.J.1    Dean, W.2    Konfortova, G.3    Kelsey, G.4
  • 52
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 53
    • 79955143103 scopus 로고    scopus 로고
    • UCSC.
  • 54
  • 55
    • 0035071815 scopus 로고    scopus 로고
    • An abundance of X-linked genes expressed in spermatogonia
    • Wang, P. J., J. R. McCarrey, F. Yang, and D. C. Page 2001. An abundance of X-linked genes expressed in spermatogonia. Nat. Genet. 27:422-426.
    • (2001) Nat. Genet. , vol.27 , pp. 422-426
    • Wang, P.J.1    McCarrey, J.R.2    Yang, F.3    Page, D.C.4
  • 56
    • 26444490659 scopus 로고    scopus 로고
    • Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse
    • Wang, P. J., D. C. Page, and J. R. McCarrey 2005. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Hum. Mol. Genet. 14:2911-2918.
    • (2005) Hum. Mol. Genet. , vol.14 , pp. 2911-2918
    • Wang, P.J.1    Page, D.C.2    McCarrey, J.R.3
  • 58
    • 0037047046 scopus 로고    scopus 로고
    • Ancestral polymorphism and adaptive evolution in the trichothecene mycotoxin gene cluster of phytopathogenic Fusarium
    • Ward, T. J., J. P. Bielawski, H. C. Kistler, E. Sullivan, and K. O'Donnell 2002. Ancestral polymorphism and adaptive evolution in the trichothecene mycotoxin gene cluster of phytopathogenic Fusarium. Proc. Natl. Acad. Sci. USA Sci 99:9278-9283.
    • (2002) Proc. Natl. Acad. Sci. USA Sci , vol.99 , pp. 9278-9283
    • Ward, T.J.1    Bielawski, J.P.2    Kistler, H.C.3    Sullivan, E.4    O'Donnell, K.5
  • 60
    • 33751364987 scopus 로고    scopus 로고
    • Genomic imprinting in mammals: emerging themes and established theories
    • Wood, A. J., and R. J. Oakey 2006. Genomic imprinting in mammals: emerging themes and established theories. PLoS Genet. 2:e147.
    • (2006) PLoS Genet. , vol.2
    • Wood, A.J.1    Oakey, R.J.2
  • 61
    • 33847251033 scopus 로고    scopus 로고
    • A screen for retrotransposed imprinted genes reveals an association between X chromosome homology and maternal germ-line methylation
    • Wood, A. J., R. G. Roberts, D. Monk, G. E. Moore, R. Schulz, and R. J. Oakey 2007. A screen for retrotransposed imprinted genes reveals an association between X chromosome homology and maternal germ-line methylation. PLoS Genet. 3:e20.
    • (2007) PLoS Genet. , vol.3
    • Wood, A.J.1    Roberts, R.G.2    Monk, D.3    Moore, G.E.4    Schulz, R.5    Oakey, R.J.6
  • 62
    • 0030683599 scopus 로고    scopus 로고
    • PAML: a program package for phylogenetic analysis by maximum likelihood
    • Yang, Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:555-556.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1
  • 63
    • 0036270185 scopus 로고    scopus 로고
    • Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
    • Yang, Z., and R. Nielsen 2002. Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol. Biol. Evol. 19:908-917.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 908-917
    • Yang, Z.1    Nielsen, R.2
  • 64
    • 0642373709 scopus 로고    scopus 로고
    • Different evolutionary patterns between young duplicate genes in the human genome
    • Zhang, P., Z. Gu, and W. H. Li 2003. Different evolutionary patterns between young duplicate genes in the human genome. Genome Biol. 4:R56.
    • (2003) Genome Biol. , vol.4
    • Zhang, P.1    Gu, Z.2    Li, W.H.3
  • 65
    • 1542286780 scopus 로고    scopus 로고
    • Genomic background drives the divergence of duplicated amylase genes at synonymous sites in Drosophila
    • Zhang, Z., and H. Kishino 2004a. Genomic background drives the divergence of duplicated amylase genes at synonymous sites in Drosophila. Mol. Biol. Evol. 21:222-227.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 222-227
    • Zhang, Z.1    Kishino, H.2
  • 66
    • 2442418972 scopus 로고    scopus 로고
    • Genomic background predicts the fate of duplicated genes: evidence from the yeast genome
    • Zhang, Z., and H. Kishino 2004b. Genomic background predicts the fate of duplicated genes: evidence from the yeast genome. Genetics 166:1995-1999.
    • (2004) Genetics , vol.166 , pp. 1995-1999
    • Zhang, Z.1    Kishino, H.2
  • 67
    • 27844439855 scopus 로고    scopus 로고
    • Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
    • Zhang, J., R. Nielsen, and Z. Yang 2005. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol. Biol. Evol. 22:2472-2479.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 2472-2479
    • Zhang, J.1    Nielsen, R.2    Yang, Z.3
  • 68
    • 32044447007 scopus 로고    scopus 로고
    • Comparative analyses of genomic imprinting and CpG island-methylation in mouse Murr1 and human MURR1 loci revealed a putative imprinting control region in mice
    • Zhang, Z., K. Joh, H. Yatsuki, Y. Wang, Y. Arai, H. Soejima, K. Higashimoto, T. Iwasaka, and T. Mukai 2006. Comparative analyses of genomic imprinting and CpG island-methylation in mouse Murr1 and human MURR1 loci revealed a putative imprinting control region in mice. Gene 366:77-86.
    • (2006) Gene , vol.366 , pp. 77-86
    • Zhang, Z.1    Joh, K.2    Yatsuki, H.3    Wang, Y.4    Arai, Y.5    Soejima, H.6    Higashimoto, K.7    Iwasaka, T.8    Mukai, T.9
  • 69
    • 71049190885 scopus 로고    scopus 로고
    • Extensive structural renovation of retrogenes in the evolution of the Populus genome
    • Zhu, Z., Y. Zhang, and M. Long 2009. Extensive structural renovation of retrogenes in the evolution of the Populus genome. Plant Physiol. 151:1943-1951.
    • (2009) Plant Physiol. , vol.151 , pp. 1943-1951
    • Zhu, Z.1    Zhang, Y.2    Long, M.3


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