메뉴 건너뛰기




Volumn 8, Issue 1, 2011, Pages

Improving the prediction of yeast protein function using weighted protein-protein interactions

Author keywords

[No Author keywords available]

Indexed keywords

SACCHAROMYCES CEREVISIAE PROTEIN;

EID: 79955135254     PISSN: None     EISSN: 17424682     Source Type: Journal    
DOI: 10.1186/1742-4682-8-11     Document Type: Article
Times cited : (12)

References (43)
  • 1
    • 41349091869 scopus 로고    scopus 로고
    • Gene function prediction using labeled and unlabeled data
    • 10.1186/1471-2105-9-57. 18221567
    • Gene function prediction using labeled and unlabeled data. XM Zhao Y Wang L Chen K Aihara, BMC Bioinformatics 2008 9 57 71 10.1186/1471-2105-9-57 18221567
    • (2008) BMC Bioinformatics , vol.9 , pp. 57-71
    • Zhao, X.M.1    Wang, Y.2    Chen, L.3    Aihara, K.4
  • 2
    • 21844466280 scopus 로고    scopus 로고
    • DNA-Protein Binding and gene expression patterns
    • Statistics and Science: A Festschrift for Terry Speed
    • DNA-Protein Binding and gene expression patterns. H Zhao B Wu, Lecture Notes-Monograph Series Statistics and Science: A Festschrift for Terry Speed 2003 40 259 274
    • (2003) Lecture Notes-Monograph Series , vol.40 , pp. 259-274
    • Zhao, H.1    Wu, B.2
  • 3
    • 79957825451 scopus 로고    scopus 로고
    • Phylogenetic Networks Simulation, Characterization, and Reconstruction
    • Phylogenetic Networks Simulation, Characterization, and Reconstruction. M Morin, New Mexico 2007
    • (2007) New Mexico
    • Morin, M.1
  • 4
    • 33847278849 scopus 로고    scopus 로고
    • Construction of phylogenetic profiles based on the genetic distance of hundreds of genomes
    • DOI 10.1016/j.bbrc.2007.02.048, PII S0006291X07003257
    • Construction of phylogenetic profiles based on the genetic distance of hundreds of genomes. J Sun Z Zhao, Biochem Biophys Res Commun 2007 355 3 849 853 10.1016/j.bbrc.2007.02.048 17320815 (Pubitemid 46330230)
    • (2007) Biochemical and Biophysical Research Communications , vol.355 , Issue.3 , pp. 849-853
    • Sun, J.1    Zhao, Z.2
  • 7
    • 66449105901 scopus 로고    scopus 로고
    • Protein function annotation from sequence: Prediction of residues interacting with RNA
    • 10.1093/bioinformatics/btp257. 19389733
    • Protein function annotation from sequence: prediction of residues interacting with RNA. R Spriggs Y Murakami, Bioinformatics 2009 25 12 1492 1497 10.1093/bioinformatics/btp257 19389733
    • (2009) Bioinformatics , vol.25 , Issue.12 , pp. 1492-1497
    • Spriggs, R.1    Murakami, Y.2
  • 8
    • 33748776559 scopus 로고    scopus 로고
    • Automated protein function prediction - The genomic challenge
    • DOI 10.1093/bib/bbl004
    • Automated protein function prediction - -the genomic challenge. I Friedberg, Bioinformatics 2006 7 3 225 242 16772267 (Pubitemid 44404873)
    • (2006) Briefings in Bioinformatics , vol.7 , Issue.3 , pp. 225-242
    • Friedberg, I.1
  • 9
    • 55449131589 scopus 로고    scopus 로고
    • Probabilistic Protein Function Prediction from Heterogeneous Genome-Wide Data
    • 10.1371/journal.pone.0000337. 17396164
    • Probabilistic Protein Function Prediction from Heterogeneous Genome-Wide Data. N Nariai ED Kolaczyk S Kasif, PLoS ONE 2007 2 337 10.1371/journal.pone. 0000337 17396164
    • (2007) PLoS ONE , vol.2 , pp. 5337
    • Nariai, N.1    Kolaczyk, E.D.2    Kasif, S.3
  • 11
    • 43049159751 scopus 로고    scopus 로고
    • Protein interaction predictions from diverse sources
    • 10.1016/j.drudis.2008.01.005. 18468558
    • Protein interaction predictions from diverse sources. Y Liu I Kim H Zhao, Drug Discov Today 2008 13 9-10 409 416 10.1016/j.drudis.2008.01.005 18468558
    • (2008) Drug Discov Today , vol.13 , Issue.9-10 , pp. 409-416
    • Liu, Y.1    Kim, I.2    Zhao, H.3
  • 12
    • 79957802006 scopus 로고    scopus 로고
    • Estimation of the correlation between protein sub-function categories based on overlapping proteins
    • Estimation of the correlation between protein sub-function categories based on overlapping proteins. S Khaled S Nahed K Yasser, 27th National Radio Science conference (NRSC) 2010 323 331
    • (2010) 27th National Radio Science Conference (NRSC) , pp. 323-331
    • Khaled, S.1    Nahed, S.2    Yasser, K.3
  • 14
    • 79957845713 scopus 로고    scopus 로고
    • Determining the Relations between Protein Sub-Function Categories Based on Overlapping Proteins
    • Determining The Relations Between Protein Sub-Function Categories Based On Overlapping Proteins. S Khaled S Nahed K Yasser, JCC 2011
    • (2011) JCC
    • Khaled, S.1    Nahed, S.2    Yasser, K.3
  • 15
  • 17
    • 0037423828 scopus 로고    scopus 로고
    • How the global structure of protein interaction networks evolves
    • DOI 10.1098/rspb.2002.2269
    • How the global structure of protein interaction networks evolves. A Wagner, Proc Biol Sci 2003 270 1514 457 466 10.1098/rspb.2002.2269 12641899 (Pubitemid 36308221)
    • (2003) Proceedings of the Royal Society B: Biological Sciences , vol.270 , Issue.1514 , pp. 457-466
    • Wagner, A.1
  • 19
    • 0033669189 scopus 로고    scopus 로고
    • A network of protein-protein interactions in yeast
    • 10.1038/82360. 11101803
    • A network of protein-protein interactions in yeast. B Schwikowski P Uetz S Fields, Nat Biotechnol 2000 18 12 1257 1261 10.1038/82360 11101803
    • (2000) Nat Biotechnol , vol.18 , Issue.12 , pp. 1257-1261
    • Schwikowski, B.1    Uetz, P.2    Fields, S.3
  • 20
    • 0035044077 scopus 로고    scopus 로고
    • Assessment of prediction accuracy of protein function from protein-protein interaction data
    • DOI 10.1002/yea.706
    • Assessment of prediction accuracy of protein function from protein - protein interaction data. H Hishigaki K Nakai T Ono A Tanigami T Takagi, Yeast 2001 18 6 523 531 10.1002/yea.706 11284008 (Pubitemid 32318334)
    • (2001) Yeast , vol.18 , Issue.6 , pp. 523-531
    • Hishigaki, H.1    Nakai, K.2    Ono, T.3    Tanigami, A.4    Takagi, T.5
  • 21
    • 0742304254 scopus 로고    scopus 로고
    • Prediction of Protein Function Using Protein-Protein Interaction Data
    • DOI 10.1089/106652703322756168
    • Prediction of protein function using protein-protein interaction data. M Deng K Zhang S Mehta T Chen F Sun, J Comput Biol 2003 10 6 947 960 10.1089/106652703322756168 14980019 (Pubitemid 38156407)
    • (2003) Journal of Computational Biology , vol.10 , Issue.6 , pp. 947-960
    • Deng, M.1    Zhang, K.2    Mehta, S.3    Chen, T.4    Sun, F.5
  • 26
    • 0035231926 scopus 로고    scopus 로고
    • Two-hybrid systems. Methods and protocols. Introduction
    • 11530620
    • Two-hybrid systems. Methods and protocols. Introduction. PN McDonald, Methods Mol Biol 2001 177 & 22 viii 11530620
    • (2001) Methods Mol Biol , vol.177
    • McDonald, P.N.1
  • 32
    • 0035212065 scopus 로고    scopus 로고
    • Is there a bias in proteome research?
    • DOI 10.1101/gr.206701
    • Is there a bias in proteome research? R Mrowka A Patzak H Herzel, Genome Res 2001 11 12 1971 1973 10.1101/gr.206701 11731485 (Pubitemid 33138792)
    • (2001) Genome Research , vol.11 , Issue.12 , pp. 1971-1973
    • Mrowka, R.1    Patzak, A.2    Herzel, H.3
  • 33
    • 58049215468 scopus 로고    scopus 로고
    • Combining multiple positive training sets to generate confidence scores for protein-protein interactions
    • 19010802
    • Combining multiple positive training sets to generate confidence scores for protein-protein interactions. J Yu RL Finley Jr, Bioinformatics 2009 25 1 105 111 19010802
    • (2009) Bioinformatics , vol.25 , Issue.1 , pp. 105-111
    • Yu, J.1    Finley, Jr.R.L.2
  • 36
    • 0347473809 scopus 로고    scopus 로고
    • Gaining confidence in high-throughput protein interaction networks
    • DOI 10.1038/nbt924
    • Gaining confidence in high-throughput protein interaction networks. JS Bader A Chaudhuri JM Rothberg J Chant, Nat Biotechnol 2004 22 1 78 85 10.1038/nbt924 14704708 (Pubitemid 38057960)
    • (2004) Nature Biotechnology , vol.22 , Issue.1 , pp. 78-85
    • Bader, J.S.1    Chaudhuri, A.2    Rothberg, J.M.3    Chant, J.4
  • 37
    • 20844454090 scopus 로고    scopus 로고
    • Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces
    • DOI 10.1093/bioinformatics/bti443
    • Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces. AS Aytuna A Gursoy O Keskin, Bioinformatics 2005 21 12 2850 2855 10.1093/bioinformatics/bti443 15855251 (Pubitemid 40862283)
    • (2005) Bioinformatics , vol.21 , Issue.12 , pp. 2850-2855
    • Selim Aytuna, S.1    Gursoy, A.2    Keskin, O.3
  • 38
    • 0037482108 scopus 로고    scopus 로고
    • Assessment of the reliability of protein-protein interactions and protein function prediction
    • Assessment of the reliability of protein-protein interactions and protein function prediction. M Deng F Sun T Chen, Pac Symp Biocomput 2003 140 151
    • (2003) Pac Symp Biocomput , pp. 140-151
    • Deng, M.1    Sun, F.2    Chen, T.3
  • 39
    • 0036493195 scopus 로고    scopus 로고
    • Interaction generality, a measurement to assess the reliability of a protein-protein interaction
    • Interaction generality, a measurement to assess the reliability of a protein-protein interaction. R Saito H Suzuki Y Hayashizaki, Nucleic Acids Res 2002 30 5 1163 1168 10.1093/nar/30.5.1163 11861907 (Pubitemid 34679688)
    • (2002) Nucleic Acids Research , vol.30 , Issue.5 , pp. 1163-1168
    • Saito, R.1    Suzuki, H.2    Hayashizaki, Y.3
  • 40
    • 29144442904 scopus 로고    scopus 로고
    • Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps
    • 15961472
    • Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. E Nabieva K Jim A Agarwal B Chazelle M Singh, Bioinformatics 2005 21 Suppl 1 302 310 15961472
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 1 , pp. 9302-310
    • Nabieva, E.1    Jim, K.2    Agarwal, A.3    Chazelle, B.4    Singh, M.5
  • 41
    • 33745619564 scopus 로고    scopus 로고
    • Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions
    • Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions. HN Chua WK Sung L Wong, Bioinformatics 2006 22 13 1630 1623
    • (2006) Bioinformatics , vol.22 , Issue.13 , pp. 1630-1623
    • Chua, H.N.1    Sung, W.K.2    Wong, L.3
  • 42
    • 79957858764 scopus 로고    scopus 로고
    • Interaction Generality, a Measurement to Assess the Reliability of a Protein-Protein Interaction
    • Interaction Generality, a Measurement to Assess the Reliability of a Protein-Protein Interaction. R Saito M Tomita, Genome Informatics 2002 13 324 325
    • (2002) Genome Informatics , vol.13 , pp. 324-325
    • Saito, R.1    Tomita, M.2
  • 43
    • 0242500972 scopus 로고    scopus 로고
    • Construction of reliable protein-protein interaction networks with a new interaction generality measure
    • DOI 10.1093/bioinformatics/btg070
    • Construction of reliable protein-protein interaction networks with a new interaction generality measure. R Saito H Suzuki Y Hayashizaki, Bioinformatics 2003 19 6 756 763 10.1093/bioinformatics/btg070 12691988 (Pubitemid 36511900)
    • (2003) Bioinformatics , vol.19 , Issue.6 , pp. 756-763
    • Saito, R.1    Suzuki, H.2    Hayashizaki, Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.