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Volumn 12, Issue , 2011, Pages

Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARABIDOPSIS; ARTICLE; ASPEN; BACTERIAL ARTIFICIAL CHROMOSOME; CHROMOSOME ANALYSIS; CHROMOSOME INVERSION; COMPUTER MODEL; CONTROLLED STUDY; DNA BASE COMPOSITION; GENE LIBRARY; GENOME ANALYSIS; GRAPE; INSERT SIZE LIBRARY; MAIZE; NONHUMAN; NUCLEOTIDE REPEAT; PLANT CHROMOSOME; PLANT GENOME; POPULUS TRICHOCARPA; QUANTITATIVE TRAIT LOCUS; RICE; SCORING SYSTEM; SEQUENCE ANALYSIS; SORGHUM; SORGHUM BICOLOR; WHOLE GENOME SEQUENCING; BASE PAIRING; DNA SEQUENCE; GENETICS; GENOMICS; METHODOLOGY; STANDARD;

EID: 79955105933     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-194     Document Type: Article
Times cited : (11)

References (22)
  • 1
    • 0035366295 scopus 로고    scopus 로고
    • Five-color-based high-information-content fingerprinting of bacterial artificial chromosome clones using type IIS restriction endonucleases
    • 10.1006/geno.2001.6547, 11386750
    • Ding Y, Johnson MD, Chen WQ, Wong D, Chen YJ, Benson SC, Lam JY, Kim YM, Shizuya H. Five-color-based high-information-content fingerprinting of bacterial artificial chromosome clones using type IIS restriction endonucleases. Genomics 2001, 74(2):142-154. 10.1006/geno.2001.6547, 11386750.
    • (2001) Genomics , vol.74 , Issue.2 , pp. 142-154
    • Ding, Y.1    Johnson, M.D.2    Chen, W.Q.3    Wong, D.4    Chen, Y.J.5    Benson, S.C.6    Lam, J.Y.7    Kim, Y.M.8    Shizuya, H.9
  • 2
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • 10.1038/nature03895, 16100779, IRGSP
    • IRGSP The map-based sequence of the rice genome. Nature 2005, 436(7052):793-800. 10.1038/nature03895, 16100779, IRGSP.
    • (2005) Nature , vol.436 , Issue.7052 , pp. 793-800
  • 3
    • 40449087752 scopus 로고    scopus 로고
    • Plant sciences. Corn genomics pops wide open
    • 10.1126/science.319.5868.1333, 18323430
    • Pennisi E. Plant sciences. Corn genomics pops wide open. Science 2008, 319(5868):1333. 10.1126/science.319.5868.1333, 18323430.
    • (2008) Science , vol.319 , Issue.5868 , pp. 1333
    • Pennisi, E.1
  • 4
    • 34848886909 scopus 로고    scopus 로고
    • The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    • 10.1038/nature06148, 17721507
    • Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 2007, 449(7161):463-467. 10.1038/nature06148, 17721507.
    • (2007) Nature , vol.449 , Issue.7161 , pp. 463-467
    • Jaillon, O.1    Aury, J.M.2    Noel, B.3    Policriti, A.4    Clepet, C.5    Casagrande, A.6    Choisne, N.7    Aubourg, S.8    Vitulo, N.9    Jubin, C.10
  • 7
    • 71549121654 scopus 로고    scopus 로고
    • De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley
    • 10.1186/1471-2164-10-547, 2784808, 19930547
    • Steuernagel B, Taudien S, Gundlach H, Seidel M, Ariyadasa R, Schulte D, Petzold A, Felder M, Graner A, Scholz U, et al. De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley. BMC Genomics 2009, 10:547. 10.1186/1471-2164-10-547, 2784808, 19930547.
    • (2009) BMC Genomics , vol.10 , pp. 547
    • Steuernagel, B.1    Taudien, S.2    Gundlach, H.3    Seidel, M.4    Ariyadasa, R.5    Schulte, D.6    Petzold, A.7    Felder, M.8    Graner, A.9    Scholz, U.10
  • 8
    • 33750688196 scopus 로고    scopus 로고
    • 454 sequencing put to the test using the complex genome of barley
    • 10.1186/1471-2164-7-275, 1633745, 17067373
    • Wicker T, Schlagenhauf E, Graner A, Close TJ, Keller B, Stein N. 454 sequencing put to the test using the complex genome of barley. BMC Genomics 2006, 7:275. 10.1186/1471-2164-7-275, 1633745, 17067373.
    • (2006) BMC Genomics , vol.7 , pp. 275
    • Wicker, T.1    Schlagenhauf, E.2    Graner, A.3    Close, T.J.4    Keller, B.5    Stein, N.6
  • 9
    • 69249142634 scopus 로고    scopus 로고
    • A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley
    • 10.1111/j.1365-313X.2009.03911.x, 19453446
    • Wicker T, Taudien S, Houben A, Keller B, Graner A, Platzer M, Stein N. A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley. Plant J 2009, 59(5):712-722. 10.1111/j.1365-313X.2009.03911.x, 19453446.
    • (2009) Plant J , vol.59 , Issue.5 , pp. 712-722
    • Wicker, T.1    Taudien, S.2    Houben, A.3    Keller, B.4    Graner, A.5    Platzer, M.6    Stein, N.7
  • 13
    • 77956279237 scopus 로고    scopus 로고
    • Assembly of large genomes using second-generation sequencing
    • 10.1101/gr.101360.109, 2928494, 20508146
    • Schatz MC, Delcher AL, Salzberg SL. Assembly of large genomes using second-generation sequencing. Genome Res 2010, 20(9):1165-1173. 10.1101/gr.101360.109, 2928494, 20508146.
    • (2010) Genome Res , vol.20 , Issue.9 , pp. 1165-1173
    • Schatz, M.C.1    Delcher, A.L.2    Salzberg, S.L.3
  • 14
    • 33746605947 scopus 로고    scopus 로고
    • A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes
    • 10.1073/pnas.0604351103, 1544072, 16840556
    • Goldberg SM, Johnson J, Busam D, Feldblyum T, Ferriera S, Friedman R, Halpern A, Khouri H, Kravitz SA, Lauro FM, et al. A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes. Proc Natl Acad Sci USA 2006, 103(30):11240-11245. 10.1073/pnas.0604351103, 1544072, 16840556.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.30 , pp. 11240-11245
    • Goldberg, S.M.1    Johnson, J.2    Busam, D.3    Feldblyum, T.4    Ferriera, S.5    Friedman, R.6    Halpern, A.7    Khouri, H.8    Kravitz, S.A.9    Lauro, F.M.10
  • 15
    • 84871120858 scopus 로고    scopus 로고
    • Rice Genome Annotation Project
    • Rice Genome Annotation Project. , ftp://ftp.plantbiology.msu.edu/pub/data/Eukaryotic_Projects/o_sativa/annotation_dbs/pseudomolecules/version_6.1/all.dir/all.BAC_in_pseudomolecule.info
  • 17
    • 0004239562 scopus 로고    scopus 로고
    • RepeatMasker
    • RepeatMasker. , http://www.repeatmasker.org
  • 18
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • 10.1038/nbt1486, 18846087
    • Shendure J, Ji H. Next-generation DNA sequencing. Nat Biotechnol 2008, 26(10):1135-1145. 10.1038/nbt1486, 18846087.
    • (2008) Nat Biotechnol , vol.26 , Issue.10 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 20
    • 79957535538 scopus 로고    scopus 로고
    • WGS-ASSEMBLER
    • WGS-ASSEMBLER. , http://sourceforge.net/projects/wgs-assembler/
  • 22
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • 10.1093/nar/25.17.3389, 146917, 9254694
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25(17):3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
    • (1997) Nucleic Acids Res , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.