Proteomic investigations of the synaptic vesicle interactome

Expert Review of Proteomics

Volumn 8, Issue 2, 2011, Pages 211-220

  Barth, Joern ^a   Volknandt, Walter ^a  

^a GOETHE UNIVERSITY   (Germany)

Author keywords

interactome; mass spectrometry; protein interaction; proteome; synaptic vesicle cycle; synaptic vesicle proteins; synaptic vesicles

Indexed keywords

ALPHA TUBULIN; CLATHRIN; DYNAMIN I; DYNEIN ADENOSINE TRIPHOSPHATASE; ENOLASE; HETEROTRIMERIC GUANINE NUCLEOTIDE BINDING PROTEIN; KINESIN 5; MUNC18 PROTEIN; N METHYL DEXTRO ASPARTIC ACID RECEPTOR; NEUROTRANSMITTER; PROTEOME; PYRUVATE KINASE; RAB PROTEIN; SNARE PROTEIN; SPECTRIN; SYNAPSIN I; SYNAPTOBREVIN 2; SYNAPTOJANIN; SYNAPTOPHYSIN; SYNAPTOTAGMIN I; SYNTAXIN 1A;

CELL MIGRATION; ENDOCYTOSIS; EXOCYTOSIS; HUMAN; MASS SPECTROMETRY; NERVE CONDUCTION; NONHUMAN; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN PROTEIN INTERACTION; PROTEOMICS; REVIEW; SYNAPSE VESICLE; SYNAPTIC TRANSMISSION;

ANIMALS; HUMANS; MODELS, BIOLOGICAL; PROTEOMICS; SYNAPTIC VESICLES;

EID: 79955066072     PISSN: 14789450     EISSN: 17448387     Source Type: Journal    
DOI: 10.1586/epr.11.7     Document Type: Review

References (59)

1. Littleton JT. Mixing and matching during synaptic vesicle endocytosis. Neuron 51(2), 149-151 (2006). (Pubitemid 44041870)
2. Ryan TA. A pre-synaptic to-do list for coupling exocytosis to endocytosis. Curr. Opin. Cell Biol. 18(4), 416-421 (2006). (Pubitemid 44016062)
3. Shupliakov O, Brodin L. Recent insights into the building and cycling of synaptic vesicles. Exp. Cell Res. 316(8), 1344-1350 (2010).
4. Burré J, Volknandt W. The synaptic vesicle proteome. J. Neurochem. 101(6), 1448-1462 (2007). (Pubitemid 46848849)
5. van Montfort BA, Canas B, Duurkens R et al. Improved in-gel approaches to generate peptide maps of integral membrane proteins with matrix-assisted laser desorption/ ionization time-of-flight mass spectrometry. J. Mass Spectrom. 37(3), 322-330 (2002). (Pubitemid 34240318)
6. Tannu NS, Hemby SE. Methods for proteomics in neuroscience. Prog. Brain Res. 158, 41-82 (2006).
7. Burré J, Beckhaus T, Schägger H et al. Analysis of the synaptic vesicle proteome using three gel-based protein separation techniques. Proteomics 6(23), 6250-6262 (2006). (Pubitemid 44935512)
8. Rais I, Karas M, Schägger H. Two-dimensional electrophoresis for the isolation of integral membrane proteins and mass spectrometric identification. Proteomics 4(9), 2567-2571 (2004). (Pubitemid 39202158)
9. Strecker V, Wumaier Z, Wittig I et al. Large pore gels to separate mega protein complexes larger than 10 MDa by blue native electrophoresis: isolation of putative respiratory strings or patches. Proteomics 10(18), 3379-3387 (2010).
10. Yates JR 3rd, Gilchrist A, Howell KE et al. Proteomics of organelles and large cellular structures. Nat. Rev. Mol. Cell Biol. 6(9), 702-714 (2005). (Pubitemid 41742794)
11. Burré J, Beckhaus T, Corvey C et al. Synaptic vesicle proteins under conditions of rest and activation: analysis by 2-D difference gel electrophoresis. Electrophoresis 27(17), 3488-3496 (2006). (Pubitemid 44430730)
12. Minty A, Dumont X, Kaghad M et al. Covalent modification of p73a by SUMO-1. Two-hybrid screening with p73 identifies novel SUMO-1-interacting proteins and a SUMO-1 interaction motif. J. Biol. Chem. 275(46), 36316-36323 (2000).
13. Park YM, Kim JY, Kwon KH et al. Profiling human brain proteome by multi-dimensional separations coupled with MS. Proteomics 6(18), 4978-4986 (2006). (Pubitemid 44483893)
14. Gauss C, Kalkum M, Lowe M et al. Analysis of the mouse proteome. (I) Brain proteins: separation by two-dimensional electrophoresis and identification by mass spectrometry and genetic variation. Electrophoresis 20(3), 575-600 (1999). (Pubitemid 29183426)
15. Wang H, Qian WJ, Chin MH et al. Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment. J. Proteome Res. 5(2), 361-369 (2006). (Pubitemid 43222304)
16. Fountoulakis M, Schuller E, Hardmeier R et al. Rat brain proteins: two-dimensional protein database and variations in the expression level. Electrophoresis 20(18), 3572-3579 (1999). (Pubitemid 30007254)
17. Krapfenbauer K, Fountoulakis M, Lubec G. A rat brain protein expression map including cytosolic and enriched mitochondrial and microsomal fractions. Electrophoresis 24(11), 1847-1870 (2003). (Pubitemid 38088972)
18. Beranova-Giorgianni S, Pabst MJ, Russell TM et al. Preliminary analysis of the mouse cerebellum proteome. Brain Res. Mol. Brain Res. 98(1-2), 135-140 (2002). (Pubitemid 34142288)
19. Langen H, Berndt P, Roder D et al. Two-dimensional map of human brain proteins. Electrophoresis 20(4-5), 907-916 (1999). (Pubitemid 29222449)
20. Surratt CK, Persico AM, Yang XD et al. A human synaptic vesicle monoamine transporter cDNA predicts posttranslational modifications, reveals chromosome-10 gene localization and identifies TaqI RFLPs. FEBS Lett. 318, 325-330 (1993). (Pubitemid 23071763)
21. Schrimpf SP, Meskenaite V, Brunner E et al. Proteomic analysis of synaptosomes using isotope-coded affinity tags and mass spectrometry. Proteomics 5(10), 2531-2541 (2005). (Pubitemid 40966480)
22. Bayes A, Grant SG. Neuroproteomics: understanding the molecular organization and complexity of the brain. Nat. Rev. Neurosci. 10(9), 635-646 (2009).
23. Yanay C, Morpurgo N, Linial M. Evolution of insect proteomes: insights into synapse organization and synaptic vesicle life cycle. Genome Biol. 9(2), R27 (2008).
24. Ryan TJ, Grant SG. The origin and evolution of synapses. Nat. Rev. Neurosci. 10(10), 701-712 (2009).
25. Tam GW, Redon R, Carter NP et al. The role of DNA copy number variation in schizophrenia. Biol. Psychiatry 66(11), 1005-1012 (2009).
26. van de Lagemaat LN, Grant SG. Genome variation and complexity in the autism spectrum. Neuron 67(1), 8-10 (2010).
27. Behan AT, Byrne C, Dunn MJ et al. Proteomic analysis of membrane microdomain-associated proteins in the dorsolateral prefrontal cortex in schizophrenia and bipolar disorder reveals alterations in LAMP, STXBP1 and BASP1 protein expression. Mol. Psychiatry 14(6), 601-613 (2009).
28. Allen NJ, Barres BA. Glia - more than just brain glue. Nature Neurosci. 457(7230), 675-677 (2009).
29. Coughenour HD, Spaulding RS, Thompson CM. The synaptic vesicle proteome: a comparative study in membrane protein identification. Proteomics 4(10), 3141-3155 (2004). (Pubitemid 39372396)
30. Blondeau F, Ritter B, Allaire PD et al. Tandem MS analysis of brain clathrin-coated vesicles reveals their critical involvement in synaptic vesicle recycling. Proc. Natl Acad. Sci. USA 101(11), 3833-3838 (2004). (Pubitemid 38381064)
31. Morciano M, Burré J, Corvey C et al. Immunoisolation of two synaptic vesicle pools from synaptosomes: a proteomics analysis. J. Neurochem. 95(6), 1732-1745 (2005). (Pubitemid 41804069)
32. Takamori S, Holt M, Stenius K et al. Molecular anatomy of a trafficking organelle. Cell 127(4), 831-846 (2006). (Pubitemid 44716256)
33. Gronborg M, Pavlos NJ, Brunk I et al. Quantitative comparison of glutamatergic and GABAergic synaptic vesicles unveils selectivity for few proteins including MAL2, a novel synaptic vesicle protein. J. Neurosci. 30(1), 2-12 (2010).
34. Burré J, Zimmermann H, Volknandt W. Immunoisolation and subfractionation of synaptic vesicle proteins. Anal. Biochem. 362(2), 172-181 (2007). (Pubitemid 46227327)
35. Morciano M, Beckhaus T, Karas M et al. The proteome of the presynaptic active zone: from docked synaptic vesicles to adhesion molecules and maxi-channels. J. Neurochem. 108, 662-675 (2009).
36. Südhof TC. The synaptic vesicle cycle. Annu. Rev. Neurosci. 27, 509-547 (2004). (Pubitemid 39050412)
37. Murshid A, Srivastava A, Kumar R et al. Characterization of the localization and function of NECAP 1 in neurons. J. Neurochem. 98(6), 1746-1762 (2006). (Pubitemid 44298242)
38. Shupliakov O. The synaptic vesicle cluster: a source of endocytic proteins during neurotransmitter release. Neuroscience 158(1), 204-210 (2009).
39. Barabasi AL, Oltvai ZN. Network biology: understanding the cell's functional organization. Nat. Rev. Genet. 5(2), 101-113 (2004). (Pubitemid 38160277)
40. Ekman D, Light S, Bjorklund AK et al. What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae? Genome Biol. 7(6), R45 (2006).
41. Hirokawa N, Noda Y, Tanaka Y et al. Kinesin superfamily motor proteins and intracellular transport. Nat. Rev. Mol. Cell Biol. 10(10), 682-696 (2009).
42. Niwa S, Tanaka Y, Hirokawa N. KIF1Bb-and KIF1A-mediated axonal transport of presynaptic regulator Rab3 occurs in a GTP-dependent manner through DENN/MADD. Nat. Cell Biol. 10(11), 1269-1279 (2008).
43. Tsuk S, Lvov A, Michaelevski I et al. Formation of the full SNARE complex eliminates interactions of its individual protein components with the Kv2.1 channel. Biochemistry 47(32), 8342-8349 (2008).
44. Chicka MC, Hui E, Liu H et al. Synaptotagmin arrests the SNARE complex before triggering fast, efficient membrane fusion in response to Ca2+. Nat. Struct. Mol. Biol. 15(8), 827-835 (2008).
45. de Wit H, Walter AM, Milosevic I et al. Synaptotagmin-1 docks secretory vesicles to syntaxin-1/SNAP-25 acceptor complexes. Cell 138(5), 935-946 (2009).
46. Pan PY, Cai Q, Lin L et al. SNAP-29- mediated modulation of synaptic transmission in cultured hippocampal neurons. J. Biol. Chem. 280(27), 25769-25779 (2005). (Pubitemid 40962287)
47. Paddock BE, Striegel AR, Hui E et al. Ca2+-dependent, phospholipid-binding residues of synaptotagmin are critical for excitation-secretion coupling in vivo. J. Neurosci. 28(30), 7458-7466 (2008).
48. Chapman ER. How does synaptotagmin trigger neurotransmitter release? Annu. Rev. Biochem. 77, 615-641 (2008).
49. Rizo J, Chen X, Arac D. Unraveling the mechanisms of synaptotagmin and SNARE function in neurotransmitter release. Trends Cell Biol. 16(7), 339-350 (2006). (Pubitemid 44062312)
50. Brose N. For better or for worse: complexins regulate SNARE function and vesicle fusion. Traffic 9(9), 1403-1413 (2008).
51. Xue M, Reim K, Chen X et al. Distinct domains of complexin I differentially regulate neurotransmitter release. Nature Struct. Molec. Biol. 14(10) 949-958 (2007). (Pubitemid 47525173)
52. Xue M, Lin YQ, Pan H et al. Tilting the balance between facilitory and inhibitory functions of mammalian and Drosophila complexins orchestrates synaptic vesicle exocytosis. Neuron 64, 367-380 (2009).
53. Bronk P, Nie Z, Klose MK et al. The multiple functions of cysteine-string protein analyzed at Drosophila nerve terminals. J. Neurosci. 25(9), 2204-2214 (2005). (Pubitemid 40322261)
54. Ruiz R, Casanas JJ, Sudhof TC et al. Cysteine string protein-a is essential for the high calcium sensitivity of exocytosis in a vertebrate synapse. Eur. J. Neurosci. 27(12), 3118-3131 (2008). (Pubitemid 351847322)
55. Schmid EM, McMahon HT. Integrating molecular and network biology to decode endocytosis. Nature 448(7156), 883-888 (2007). (Pubitemid 47312770)
56. Sorensen EB, Conner SD. AAK1 regulates Numb function at an early step in clathrin-mediated endocytosis. Traffic 9(10), 1791-1800 (2008).
57. Meyerholz A, Hinrichsen L, Groos S et al. Effect of clathrin assembly lymphoid myeloid leukemia protein depletion on clathrin coat formation. Traffic 6(12), 1225-1234 (2005). (Pubitemid 41632272)
58. Opazo F, Punge A, Buckers J et al. Limited intermixing of synaptic vesicle components upon vesicle recycling. Traffic 11(6), 800-812 (2010).
59. Kreykenbohm V, Wenzel D, Antonin W et al. The SNAREs vti1a and vti1b have distinct localization and SNARE complex partners. Eur. J. Cell Biol. 81(5), 273-280 (2002). (Pubitemid 34568208)