-
1
-
-
3042683172
-
Information theory in molecular biology
-
Adami, C.: Information theory in molecular biology. Phys. Life Rev. 1(1), 3-22 (2004).
-
(2004)
Phys. Life Rev.
, vol.1
, Issue.1
, pp. 3-22
-
-
Adami, C.1
-
2
-
-
0034712858
-
Evolution of biological complexity
-
Adami, C., Ofria, C., Collier, T.: Evolution of biological complexity. Proc. Natl. Acad. Sci. USA 97(9), 4463-4468 (2000).
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, Issue.9
, pp. 4463-4468
-
-
Adami, C.1
Ofria, C.2
Collier, T.3
-
3
-
-
34249076303
-
Evolution and ecology of antibiotic resistance genes
-
Aminov, R. I., Mackie, R. I.: Evolution and ecology of antibiotic resistance genes. FEMS Microbiol. Lett. 271(2), 147-161 (2007).
-
(2007)
FEMS Microbiol. Lett.
, vol.271
, Issue.2
, pp. 147-161
-
-
Aminov, R.I.1
Mackie, R.I.2
-
4
-
-
0014006262
-
Possible importance of transfer factors in bacterial evolution
-
Anderson, E. S.: Possible importance of transfer factors in bacterial evolution. Nature 209, 637-638 (1966).
-
(1966)
Nature
, vol.209
, pp. 637-638
-
-
Anderson, E.S.1
-
5
-
-
0014963844
-
Evolutionary significance of virus infection
-
Anderson, N. G.: Evolutionary significance of virus infection. Nature 227, 1346-1347 (1970).
-
(1970)
Nature
, vol.227
, pp. 1346-1347
-
-
Anderson, N.G.1
-
6
-
-
40849098551
-
Direct visualization of horizontal gene transfer
-
Babic, A., Lindner, A. B., Vulic, M., Stewart, E. J., Radman, M.: Direct visualization of horizontal gene transfer. Science 319(5869), 1533-1536 (2008).
-
(2008)
Science
, vol.319
, Issue.5869
, pp. 1533-1536
-
-
Babic, A.1
Lindner, A.B.2
Vulic, M.3
Stewart, E.J.4
Radman, M.5
-
7
-
-
26444506791
-
Highways of gene sharing in prokaryotes
-
Beiko, R. G., Harlow, T. J., Ragan, M. A.: Highways of gene sharing in prokaryotes. Proc. Natl. Acad. Sci. USA 102(40), 14332-14338 (2005).
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, Issue.40
, pp. 14332-14338
-
-
Beiko, R.G.1
Harlow, T.J.2
Ragan, M.A.3
-
8
-
-
0000788763
-
Modeling the role of viral disease in recurrent phytoplankton blooms
-
Beltrami, E., Carroll, T.: Modeling the role of viral disease in recurrent phytoplankton blooms. J. Math. Biol. 32(8), 857-863 (1994).
-
(1994)
J. Math. Biol.
, vol.32
, Issue.8
, pp. 857-863
-
-
Beltrami, E.1
Carroll, T.2
-
9
-
-
15244357042
-
Agricultural runoff fuels large phytoplankton blooms in vulnerable areas of the ocean
-
Beman, J. M., Arrigo, K. R., Matson, P. A.: Agricultural runoff fuels large phytoplankton blooms in vulnerable areas of the ocean. Nature 434(7030), 211-214 (2005).
-
(2005)
Nature
, vol.434
, Issue.7030
, pp. 211-214
-
-
Beman, J.M.1
Arrigo, K.R.2
Matson, P.A.3
-
10
-
-
40349089738
-
Plasmid encoded antibiotic resistance: acquisition and transfer of antibiotic resistance genes in bacteria
-
Bennett, P. M.: Plasmid encoded antibiotic resistance: acquisition and transfer of antibiotic resistance genes in bacteria. Br. J. Pharmacol. 153(S1), S347-S357 (2008).
-
(2008)
Br. J. Pharmacol.
, vol.153
, Issue.S1
-
-
Bennett, P.M.1
-
11
-
-
36749083463
-
Ohno's dilemma: Evolution of new genes under continuous selection
-
Bergthorsson, U., Andersson, D. I., Roth, J. R.: Ohno's dilemma: Evolution of new genes under continuous selection. Proc. Natl. Acad. Sci. USA 104(43), 17004 (2007).
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, Issue.43
, pp. 17004
-
-
Bergthorsson, U.1
Andersson, D.I.2
Roth, J.R.3
-
12
-
-
23044494638
-
An emerging phylogenetic core of archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences
-
Brochier, C., Forterre, P., Gribaldo, S.: An emerging phylogenetic core of archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences. BMC Evol. Biol. 5(1), 36 (2005).
-
(2005)
BMC Evol. Biol.
, vol.5
, Issue.1
, pp. 36
-
-
Brochier, C.1
Forterre, P.2
Gribaldo, S.3
-
13
-
-
70349765696
-
Robust ecological pattern formation induced by demographic noise
-
Butler, T., Goldenfeld, N.: Robust ecological pattern formation induced by demographic noise. Phys. Rev. E 80(3), 30902 (2009).
-
(2009)
Phys. Rev. E
, vol.80
, Issue.3
, pp. 30902
-
-
Butler, T.1
Goldenfeld, N.2
-
14
-
-
3042596928
-
DNA uptake during bacterial transformation
-
Chen, I., Dubnau, D.: DNA uptake during bacterial transformation. Nat. Rev., Microbiol. 2(3), 241-249 (2004).
-
(2004)
Nat. Rev., Microbiol.
, vol.2
, Issue.3
, pp. 241-249
-
-
Chen, I.1
Dubnau, D.2
-
16
-
-
55749101939
-
A collective mechanism for phase variation in biofilms
-
Chia, N., Woese, C. R., Goldenfeld, N.: A collective mechanism for phase variation in biofilms. Proc. Natl. Acad. Sci. USA 105(38), 14597-14603 (2008).
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, Issue.38
, pp. 14597-14603
-
-
Chia, N.1
Woese, C.R.2
Goldenfeld, N.3
-
17
-
-
77956217627
-
Evolution of dna replication protein complexes in eukaryotes and archaea
-
Chia, N., Cann, I., Olsen, G. J.: Evolution of dna replication protein complexes in eukaryotes and archaea. PLoS ONE 5(6), e10866 (2010).
-
(2010)
PLoS ONE
, vol.5
, Issue.6
-
-
Chia, N.1
Cann, I.2
Olsen, G.J.3
-
18
-
-
77249088623
-
Inference and characterization of horizontally transferred gene families using stochastic mapping
-
Cohen, O., Pupko, T.: Inference and characterization of horizontally transferred gene families using stochastic mapping. Mol. Biol. Evol. 27(3), 703 (2010).
-
(2010)
Mol. Biol. Evol.
, vol.27
, Issue.3
, pp. 703
-
-
Cohen, O.1
Pupko, T.2
-
19
-
-
77952314202
-
Modal codon usage: Assessing the typical codon usage of a genome
-
Davis, J. J., Olsen, G. J.: Modal codon usage: Assessing the typical codon usage of a genome. Mol. Biol. Evol. 27(4), 800 (2010).
-
(2010)
Mol. Biol. Evol.
, vol.27
, Issue.4
, pp. 800
-
-
Davis, J.J.1
Olsen, G.J.2
-
20
-
-
0242331634
-
Proteorhodopsin genes are distributed among divergent marine bacterial taxa
-
De La Torre, J. R., Christianson, L. M., Béjà, O., Suzuki, M. T., Karl, D. M., Heidelberg, J., DeLong, E. F.: Proteorhodopsin genes are distributed among divergent marine bacterial taxa. Proc. Natl. Acad. Sci. USA 100(22), 12830 (2003).
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, Issue.22
, pp. 12830
-
-
de la Torre, J.R.1
Christianson, L.M.2
Béjà, O.3
Suzuki, M.T.4
Karl, D.M.5
Heidelberg, J.6
Delong, E.F.7
-
21
-
-
19144362371
-
Microbial community genomics in the ocean
-
DeLong, E.: Microbial community genomics in the ocean. Nat. Rev., Microbiol. 3(6), 459-469 (2005).
-
(2005)
Nat. Rev., Microbiol.
, vol.3
, Issue.6
, pp. 459-469
-
-
Delong, E.1
-
22
-
-
33646397599
-
Evolution of mutation rates in bacteria
-
Denamur, E., Matic, I.: Evolution of mutation rates in bacteria. Mol. Microbiol. 60(4), 820-827 (2006).
-
(2006)
Mol. Microbiol.
, vol.60
, Issue.4
, pp. 820-827
-
-
Denamur, E.1
Matic, I.2
-
23
-
-
40849086149
-
Statistical mechanics unifies different ecological patterns
-
Dewar, R. C., Porte, A.: Statistical mechanics unifies different ecological patterns. J. Theor. Biol. 251(3), 389-403 (2008).
-
(2008)
J. Theor. Biol.
, vol.251
, Issue.3
, pp. 389-403
-
-
Dewar, R.C.1
Porte, A.2
-
24
-
-
19144366140
-
Viral metagenomics
-
Edwards, R., Rohwer, F.: Viral metagenomics. Nat. Rev., Microbiol. 3(6), 504-510 (2005).
-
(2005)
Nat. Rev., Microbiol.
, vol.3
, Issue.6
, pp. 504-510
-
-
Edwards, R.1
Rohwer, F.2
-
25
-
-
0033669672
-
Horizontal gene transfer among microbial genomes: new insights from complete genome analysis
-
Eisen, J. A.: Horizontal gene transfer among microbial genomes: new insights from complete genome analysis. Curr. Opin. Genet. Dev. 10(6), 606-611 (2000).
-
(2000)
Curr. Opin. Genet. Dev.
, vol.10
, Issue.6
, pp. 606-611
-
-
Eisen, J.A.1
-
26
-
-
0036848573
-
The ecology of transfer of mobile genetic elements
-
Elsas, J. D., Bailey, M. J.: The ecology of transfer of mobile genetic elements. FEMS Microbiol. Ecol. 42(2), 187-197 (2002).
-
(2002)
FEMS Microbiol. Ecol.
, vol.42
, Issue.2
, pp. 187-197
-
-
Elsas, J.D.1
Bailey, M.J.2
-
27
-
-
2342661195
-
Detection of lateral gene transfer events in the prokaryotic trna synthetases by the ratios of evolutionary distances method
-
Farahi, K., Pusch, G. D., Overbeek, R., Whitman, W. B.: Detection of lateral gene transfer events in the prokaryotic trna synthetases by the ratios of evolutionary distances method. J. Mol. Evol. 58(5), 615-631 (2004).
-
(2004)
J. Mol. Evol.
, vol.58
, Issue.5
, pp. 615-631
-
-
Farahi, K.1
Pusch, G.D.2
Overbeek, R.3
Whitman, W.B.4
-
28
-
-
32844465575
-
Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea
-
Frigaard, N. U., Martinez, A., Mincer, T. J., DeLong, E. F.: Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea. Nature 439(7078), 847-850 (2006).
-
(2006)
Nature
, vol.439
, Issue.7078
, pp. 847-850
-
-
Frigaard, N.U.1
Martinez, A.2
Mincer, T.J.3
Delong, E.F.4
-
29
-
-
23944506044
-
Mobile genetic elements: the agents of open source evolution
-
Frost, L. S., Leplae, R., Summers, A. O., Toussaint, A.: Mobile genetic elements: the agents of open source evolution. Nat. Rev., Microbiol. 3(9), 722-732 (2005).
-
(2005)
Nat. Rev., Microbiol.
, vol.3
, Issue.9
, pp. 722-732
-
-
Frost, L.S.1
Leplae, R.2
Summers, A.O.3
Toussaint, A.4
-
30
-
-
0033670249
-
Horizontal gene transfer in bacterial and archaeal complete genomes
-
Garcia-Vallvé, S., Romeu, A., Palau, J.: Horizontal gene transfer in bacterial and archaeal complete genomes. Genome Res. 10(11), 1719 (2000).
-
(2000)
Genome Res.
, vol.10
, Issue.11
, pp. 1719
-
-
Garcia-Vallvé, S.1
Romeu, A.2
Palau, J.3
-
31
-
-
45849089569
-
Massive horizontal gene transfer in bdelloid rotifers
-
Gladyshev, E., Meselson, M., Arkhipova, I.: Massive horizontal gene transfer in bdelloid rotifers. Science 320(5880), 1210 (2008).
-
(2008)
Science
, vol.320
, Issue.5880
, pp. 1210
-
-
Gladyshev, E.1
Meselson, M.2
Arkhipova, I.3
-
32
-
-
23944499633
-
Horizontal gene transfer genome innovation and evolution
-
Gogarten, J. P., Townsend, J. P.: Horizontal gene transfer genome innovation and evolution. Nat. Rev., Microbiol. 3(9), 679-687 (2005).
-
(2005)
Nat. Rev., Microbiol.
, vol.3
, Issue.9
, pp. 679-687
-
-
Gogarten, J.P.1
Townsend, J.P.2
-
33
-
-
33846551381
-
Biology's next revolution
-
Goldenfeld, N., Woese, C.: Biology's next revolution. Nature 445(7126), 369 (2007).
-
(2007)
Nature
, vol.445
, Issue.7126
, pp. 369
-
-
Goldenfeld, N.1
Woese, C.2
-
34
-
-
79951982798
-
Life is physics: evolution as a collective phenomenon far from equilibrium
-
(in press)
-
Goldenfeld, N., Woese, C.: Life is physics: evolution as a collective phenomenon far from equilibrium. Ann. Rev. Condens. Matter. Phys. 1 (2010, in press).
-
(2010)
Ann. Rev. Condens. Matter. Phys.
, vol.1
-
-
Goldenfeld, N.1
Woese, C.2
-
35
-
-
0027838126
-
A review of harmful algal blooms and their apparent global increase
-
Hallegraeff, G.: A review of harmful algal blooms and their apparent global increase. Phycologia 32(2), 79-99 (1993).
-
(1993)
Phycologia
, vol.32
, Issue.2
, pp. 79-99
-
-
Hallegraeff, G.1
-
36
-
-
10344227692
-
Metagenomics: application of genomics to uncultured microorganisms
-
Handelsman, J.: Metagenomics: application of genomics to uncultured microorganisms. Microbiol. Mol. Biol. Rev. 68(4), 669-685 (2004).
-
(2004)
Microbiol. Mol. Biol. Rev.
, vol.68
, Issue.4
, pp. 669-685
-
-
Handelsman, J.1
-
37
-
-
0033518234
-
From molecular to modular cell biology
-
Hartwell, L., Hopfield, J., Leibler, S., Murray, A.: From molecular to modular cell biology. Nature 402, C47-C52 (1999).
-
(1999)
Nature
, vol.402
-
-
Hartwell, L.1
Hopfield, J.2
Leibler, S.3
Murray, A.4
-
38
-
-
64549088424
-
Spontaneous emergence of modularity in a model of evolving individuals and in real networks
-
He, J., Sun, J., Deem, M.: Spontaneous emergence of modularity in a model of evolving individuals and in real networks. Phys. Rev. E, Stat. Nonlinear Soft Matter Phys. 79(3), 031907 (2009).
-
(2009)
Phys. Rev. E, Stat. Nonlinear Soft Matter Phys.
, vol.79
, Issue.3
, pp. 031907
-
-
He, J.1
Sun, J.2
Deem, M.3
-
39
-
-
35248893393
-
Correlated phenotypic transitions to competence in bacterial colonies
-
Hecht, I., Ben-Jacob, E., Levine, H.: Correlated phenotypic transitions to competence in bacterial colonies. Phys. Rev. E 76(4), 40901 (2007).
-
(2007)
Phys. Rev. E
, vol.76
, Issue.4
, pp. 40901
-
-
Hecht, I.1
Ben-Jacob, E.2
Levine, H.3
-
40
-
-
0034332560
-
The origins and ongoing evolution of viruses
-
Hendrix, R. W., Lawrence, J. G., Hatfull, G. F., Casjens, S.: The origins and ongoing evolution of viruses. Trends Microbiol. 8(11), 504-508 (2000).
-
(2000)
Trends Microbiol.
, vol.8
, Issue.11
, pp. 504-508
-
-
Hendrix, R.W.1
Lawrence, J.G.2
Hatfull, G.F.3
Casjens, S.4
-
41
-
-
3042718925
-
Complete genomes of two clinical staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance
-
Holden, M. T. G., Feil, E. J., Lindsay, J. A., Peacock, S. J., Day, N. P. J., Enright, M. C., Foster, T. J., Moore, C. E., Hurst, L., Atkin, R., et al.: Complete genomes of two clinical staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance. Proc. Natl. Acad. Sci. USA 101(26), 9786-9792 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, Issue.26
, pp. 9786-9792
-
-
Holden, M.T.G.1
Feil, E.J.2
Lindsay, J.A.3
Peacock, S.J.4
Day, N.P.J.5
Enright, M.C.6
Foster, T.J.7
Moore, C.E.8
Hurst, L.9
Atkin, R.10
-
42
-
-
34548768028
-
Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes
-
Hotopp, J., Clark, M., Oliveira, D., Foster, J., Fischer, P., Torres, M., Giebel, J., Kumar, N., Ishmael, N., Wang, S., et al.: Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes. Science 317(5845), 1753-1756 (2007).
-
(2007)
Science
, vol.317
, Issue.5845
, pp. 1753-1756
-
-
Hotopp, J.1
Clark, M.2
Oliveira, D.3
Foster, J.4
Fischer, P.5
Torres, M.6
Giebel, J.7
Kumar, N.8
Ishmael, N.9
Wang, S.10
-
44
-
-
0036173243
-
A model of phytoplankton blooms
-
Huppert, A., Blasius, B., Stone, L.: A model of phytoplankton blooms. Am. Nat. 159(2), 156-171 (2002).
-
(2002)
Am. Nat.
, vol.159
, Issue.2
, pp. 156-171
-
-
Huppert, A.1
Blasius, B.2
Stone, L.3
-
45
-
-
0000123207
-
The paradox of the plankton
-
Hutchinson, G.: The paradox of the plankton. Am. Nat. 95(882), 137-145 (1961).
-
(1961)
Am. Nat.
, vol.95
, Issue.882
, pp. 137-145
-
-
Hutchinson, G.1
-
46
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong, H., Tombor, B., Albert, R., Oltvai, Z. N., Barabási, A. L.: The large-scale organization of metabolic networks. Nature 407(6804), 651-654 (2000).
-
(2000)
Nature
, vol.407
, Issue.6804
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabási, A.L.5
-
47
-
-
25444448797
-
Spontaneous evolution of modularity and network motifs
-
Kashtan, N., Alon, U.: Spontaneous evolution of modularity and network motifs. Proc. Natl. Acad. Sci. USA 102(39), 13773-13778 (2005).
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, Issue.39
, pp. 13773-13778
-
-
Kashtan, N.1
Alon, U.2
-
48
-
-
68149110046
-
Extinctions in heterogeneous environments and the evolution of modularity
-
Kashtan, N., Parter, M., Dekel, E., Mayo, A., Alon, U.: Extinctions in heterogeneous environments and the evolution of modularity. Evolution 63(8), 1964-1975 (2009).
-
(2009)
Evolution
, vol.63
, Issue.8
, pp. 1964-1975
-
-
Kashtan, N.1
Parter, M.2
Dekel, E.3
Mayo, A.4
Alon, U.5
-
49
-
-
47649104484
-
Horizontal gene transfer in eukaryotic evolution
-
Keeling, P. J., Palmer, J. D.: Horizontal gene transfer in eukaryotic evolution. Nat. Rev. Genet. 9(8), 605-618 (2008).
-
(2008)
Nat. Rev. Genet.
, vol.9
, Issue.8
, pp. 605-618
-
-
Keeling, P.J.1
Palmer, J.D.2
-
50
-
-
34249050929
-
Monitoring and source tracking of tetracycline resistance genes in lagoons and groundwater adjacent to swine production facilities over a 3-year period
-
Koike, S., Krapac, I., Oliver, H., Yannarell, A., Chee-Sanford, J., Aminov, R., Mackie, R.: Monitoring and source tracking of tetracycline resistance genes in lagoons and groundwater adjacent to swine production facilities over a 3-year period. Appl. Environ. Microbiol. 73(15), 4813-4823 (2007).
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, Issue.15
, pp. 4813-4823
-
-
Koike, S.1
Krapac, I.2
Oliver, H.3
Yannarell, A.4
Chee-Sanford, J.5
Aminov, R.6
Mackie, R.7
-
51
-
-
68549085316
-
Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre
-
Konstantinidis, K. T., Braff, J., Karl, D. M., DeLong, E. F.: Comparative metagenomic analysis of a microbial community residing at a depth of 4, 000 meters at station ALOHA in the North Pacific subtropical gyre. Appl. Environ. Microbiol. 75(16), 5345-5355 (2009).
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, Issue.16
, pp. 5345-5355
-
-
Konstantinidis, K.T.1
Braff, J.2
Karl, D.M.3
Delong, E.F.4
-
52
-
-
44349157798
-
The evolution of modularity in bacterial metabolic networks
-
Kreimer, A., Borenstein, E., Gophna, U., Ruppin, E.: The evolution of modularity in bacterial metabolic networks. Proc. Natl. Acad. Sci. USA 105(19), 6976-6981 (2008).
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, Issue.19
, pp. 6976-6981
-
-
Kreimer, A.1
Borenstein, E.2
Gophna, U.3
Ruppin, E.4
-
53
-
-
22244450083
-
The net of life: reconstructing the microbial phylogenetic network
-
Kunin, V., Goldovsky, L., Darzentas, N., Ouzounis, C. A.: The net of life: reconstructing the microbial phylogenetic network. Genome Res. 15(7), 954-959 (2005).
-
(2005)
Genome Res.
, vol.15
, Issue.7
, pp. 954-959
-
-
Kunin, V.1
Goldovsky, L.2
Darzentas, N.3
Ouzounis, C.A.4
-
54
-
-
3342915398
-
Transfer of photosynthesis genes to and from Prochlorococcus viruses
-
Lindell, D., Sullivan, M. B., Johnson, Z. I., Tolonen, A. C., Rohwer, F., Chisholm, S. W.: Transfer of photosynthesis genes to and from Prochlorococcus viruses. Proc. Natl. Acad. Sci. USA 101(30), 11013-110139 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, Issue.30
, pp. 11013-110139
-
-
Lindell, D.1
Sullivan, M.B.2
Johnson, Z.I.3
Tolonen, A.C.4
Rohwer, F.5
Chisholm, S.W.6
-
55
-
-
0028136885
-
Bacterial gene transfer by natural genetic transformation in the environment
-
Lorenz, M., Wackernagel, W.: Bacterial gene transfer by natural genetic transformation in the environment. Microbiol. Mol. Biol. Rev. 58(3), 563 (1994).
-
(1994)
Microbiol. Mol. Biol. Rev.
, vol.58
, Issue.3
, pp. 563
-
-
Lorenz, M.1
Wackernagel, W.2
-
56
-
-
79954632115
-
The emergence of modularity in biological systems
-
(submitted)
-
Lorenz, D. M., Jeng, A., Deem, M. W.: The emergence of modularity in biological systems. J. Life Rev. (2010, submitted).
-
(2010)
J. Life Rev.
-
-
Lorenz, D.M.1
Jeng, A.2
Deem, M.W.3
-
58
-
-
0034612282
-
The sos response regulates adaptive mutation
-
McKenzie, G. J., Harris, R. S., Lee, P. L., Rosenberg, S. M.: The sos response regulates adaptive mutation. Proc. Natl. Acad. Sci. USA 97(12), 6646 (2000).
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, Issue.12
, pp. 6646
-
-
McKenzie, G.J.1
Harris, R.S.2
Lee, P.L.3
Rosenberg, S.M.4
-
59
-
-
0026332291
-
Evidence for horizontal gene transfer in Escherichia coli speciation
-
Médigue, C., Rouxel, T., Vigier, P., Hénaut, A., Danchin, A.: Evidence for horizontal gene transfer in Escherichia coli speciation. J. Mol. Biol. 222(4), 851-856 (1991).
-
(1991)
J. Mol. Biol.
, vol.222
, Issue.4
, pp. 851-856
-
-
Médigue, C.1
Rouxel, T.2
Vigier, P.3
Hénaut, A.4
Danchin, A.5
-
60
-
-
59649092107
-
Dangerous nutrients: Evolution of phytoplankton resource uptake subject to virus attack
-
Menge, D. N. L., Weitz, J. S.: Dangerous nutrients: Evolution of phytoplankton resource uptake subject to virus attack. J. Theor. Biol. 257(1), 104-115 (2009).
-
(2009)
J. Theor. Biol.
, vol.257
, Issue.1
, pp. 104-115
-
-
Menge, D.N.L.1
Weitz, J.S.2
-
61
-
-
0025567093
-
Synchronization of pulse-coupled biological oscillators
-
Mirollo, R. E., Strogatz, S. H.: Synchronization of pulse-coupled biological oscillators. SIAM J. Appl. Math. 50(6), 1645-1662 (1990).
-
(1990)
SIAM J. Appl. Math.
, vol.50
, Issue.6
, pp. 1645-1662
-
-
Mirollo, R.E.1
Strogatz, S.H.2
-
62
-
-
68149139650
-
Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus
-
Monier, A., Pagarete, A., de Vargas, C., Allen, M., Read, B., Claverie, J., Ogata, H.: Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus. Genome Res. 19(8), 1441 (2009).
-
(2009)
Genome Res.
, vol.19
, Issue.8
, pp. 1441
-
-
Monier, A.1
Pagarete, A.2
de Vargas, C.3
Allen, M.4
Read, B.5
Claverie, J.6
Ogata, H.7
-
63
-
-
4444299868
-
Monitoring and modeling horizontal gene transfer
-
Nielsen, K. M., Townsend, J. P.: Monitoring and modeling horizontal gene transfer. Nat. Biotechnol. 22(9), 1110-1114 (2004).
-
(2004)
Nat. Biotechnol.
, vol.22
, Issue.9
, pp. 1110-1114
-
-
Nielsen, K.M.1
Townsend, J.P.2
-
64
-
-
55949134735
-
Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods
-
Pace, J., Gilbert, C., Clark, M., Feschotte, C.: Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods. Proc. Natl. Acad. Sci. USA 105(44), 17023 (2008).
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, Issue.44
, pp. 17023
-
-
Pace, J.1
Gilbert, C.2
Clark, M.3
Feschotte, C.4
-
65
-
-
28444475529
-
Adaptive evolution of bacterial metabolic networks by horizontal gene transfer
-
Pál, C., Papp, B., Lercher, M.: Adaptive evolution of bacterial metabolic networks by horizontal gene transfer. Nat. Genet. 37(12), 1372-1375 (2005).
-
(2005)
Nat. Genet.
, vol.37
, Issue.12
, pp. 1372-1375
-
-
Pál, C.1
Papp, B.2
Lercher, M.3
-
66
-
-
37549018487
-
Environmental variability and modularity of bacterial metabolic networks
-
Parter, M., Kashtan, N., Alon, U.: Environmental variability and modularity of bacterial metabolic networks. BMC Evol. Biol. 7, 169/1-8 (2007).
-
(2007)
BMC Evol. Biol.
, vol.7
-
-
Parter, M.1
Kashtan, N.2
Alon, U.3
-
67
-
-
33750105412
-
Viruses of the archaea: a unifying view
-
Prangishvili, D., Forterre, P., Garrett, R. A.: Viruses of the archaea: a unifying view. Nat. Rev., Microbiol. 4(11), 837-848 (2006).
-
(2006)
Nat. Rev., Microbiol.
, vol.4
, Issue.11
, pp. 837-848
-
-
Prangishvili, D.1
Forterre, P.2
Garrett, R.A.3
-
68
-
-
77952670727
-
Viral and microbial community dynamics in four aquatic environments
-
Rodriguez-Brito, B., Li, L., Wegley, L., Furlan, M., Angly, F., Breitbart, M., Buchanan, J., Desnues, C., Dinsdale, E., Edwards, R., Felts, B., Haynes, M., Liu, H., Lipson, D., Mahaffy, J., Belen Martin-Cuadrado, A., Mira, A., Nulton, J., et al.: Viral and microbial community dynamics in four aquatic environments. ISME J. 4(6), 739-751 (2010).
-
(2010)
ISME J.
, vol.4
, Issue.6
, pp. 739-751
-
-
Rodriguez-Brito, B.1
Li, L.2
Wegley, L.3
Furlan, M.4
Angly, F.5
Breitbart, M.6
Buchanan, J.7
Desnues, C.8
Dinsdale, E.9
Edwards, R.10
Felts, B.11
Haynes, M.12
Liu, H.13
Lipson, D.14
Mahaffy, J.15
Belen Martin-Cuadrado, A.16
Mira, A.17
Nulton, J.18
-
69
-
-
70350180460
-
Explaining microbial population genomics through phage predation
-
Rodriguez-Valera, F., Martin-Cuadrado, A., Rodriguez-Brito, B., Pasic, L., Thingstad, T., Rohwer, F., Mira, A.: Explaining microbial population genomics through phage predation. Nat. Rev., Microbiol. 7(11), 828-836 (2009).
-
(2009)
Nat. Rev., Microbiol.
, vol.7
, Issue.11
, pp. 828-836
-
-
Rodriguez-Valera, F.1
Martin-Cuadrado, A.2
Rodriguez-Brito, B.3
Pasic, L.4
Thingstad, T.5
Rohwer, F.6
Mira, A.7
-
70
-
-
0342460609
-
Why are antibiotic resistance genes so resistant to elimination?
-
Salyers, A. A., Amabile-Cuevas, C. F.: Why are antibiotic resistance genes so resistant to elimination? Antimicrob. Agents Chemother. 41(11), 2321 (1997).
-
(1997)
Antimicrob. Agents Chemother.
, vol.41
, Issue.11
, pp. 2321
-
-
Salyers, A.A.1
Amabile-Cuevas, C.F.2
-
71
-
-
0037704805
-
Why plankton communities have no equilibrium: solutions to the paradox
-
Scheffer, M., Rinaldi, S., Huisman, J., Weissing, F.: Why plankton communities have no equilibrium: solutions to the paradox. Hydrobiologia 491(1), 9-18 (2003).
-
(2003)
Hydrobiologia
, vol.491
, Issue.1
, pp. 9-18
-
-
Scheffer, M.1
Rinaldi, S.2
Huisman, J.3
Weissing, F.4
-
72
-
-
11144300391
-
Phaeocystis blooms in the global ocean and their controlling mechanisms: a review
-
Schoemann, V., Becquevort, S., Stefels, J., Rousseau, V., Lancelot, C.: Phaeocystis blooms in the global ocean and their controlling mechanisms: a review. J. Sea Res. 53(1-2), 43-66 (2005).
-
(2005)
J. Sea Res.
, vol.53
, Issue.1-2
, pp. 43-66
-
-
Schoemann, V.1
Becquevort, S.2
Stefels, J.3
Rousseau, V.4
Lancelot, C.5
-
73
-
-
0000790263
-
The architecture of complexity
-
Simon, H.: The architecture of complexity. Proc. Am. Philos. Soc. 106(6), 467-482 (1962).
-
(1962)
Proc. Am. Philos. Soc.
, vol.106
, Issue.6
, pp. 467-482
-
-
Simon, H.1
-
74
-
-
0036143446
-
Genomes in flux: the evolution of archaeal and proteobacterial gene content
-
Snel, B., Bork, P., Huynen, M. A.: Genomes in flux: the evolution of archaeal and proteobacterial gene content. Genome Res. 12(1), 17-25 (2002).
-
(2002)
Genome Res.
, vol.12
, Issue.1
, pp. 17-25
-
-
Snel, B.1
Bork, P.2
Huynen, M.A.3
-
75
-
-
0024293610
-
A bacterial way of life
-
Sonea, S.: A bacterial way of life. Nature 331(6153), 216 (1988).
-
(1988)
Nature
, vol.331
, Issue.6153
, pp. 216
-
-
Sonea, S.1
-
76
-
-
23944484031
-
Studying plasmid horizontal transfer in situ: a critical review
-
Sørensen, S. J., Bailey, M., Hansen, L. H., Kroer, N., Wuertz, S.: Studying plasmid horizontal transfer in situ: a critical review. Nat. Rev., Microbiol. 3(9), 700-710 (2005).
-
(2005)
Nat. Rev., Microbiol.
, vol.3
, Issue.9
, pp. 700-710
-
-
Sørensen, S.J.1
Bailey, M.2
Hansen, L.H.3
Kroer, N.4
Wuertz, S.5
-
77
-
-
0041375471
-
Cyanophages infecting the oceanic cyanobacterium Prochlorococcus
-
Sullivan, M. B., Waterbury, J. B., Chisholm, S. W.: Cyanophages infecting the oceanic cyanobacterium Prochlorococcus. Nature 424(6952), 1047-1051 (2003).
-
(2003)
Nature
, vol.424
, Issue.6952
, pp. 1047-1051
-
-
Sullivan, M.B.1
Waterbury, J.B.2
Chisholm, S.W.3
-
78
-
-
36649015601
-
Spontaneous emergence of modularity in a model of evolving individuals
-
Sun, J., Deem, M. W.: Spontaneous emergence of modularity in a model of evolving individuals. Phys. Rev. Lett. 99(22), 228107 (2007).
-
(2007)
Phys. Rev. Lett.
, vol.99
, Issue.22
, pp. 228107
-
-
Sun, J.1
Deem, M.W.2
-
79
-
-
25144506135
-
Viruses in the sea
-
Suttle, C. A.: Viruses in the sea. Nature 437(7057), 356-361 (2005).
-
(2005)
Nature
, vol.437
, Issue.7057
, pp. 356-361
-
-
Suttle, C.A.1
-
80
-
-
34548792911
-
Marine virusesmajor players in the global ecosystem
-
Suttle, C. A.: Marine virusesmajor players in the global ecosystem. Nat. Rev., Microbiol. 5(10), 801-812 (2007).
-
(2007)
Nat. Rev., Microbiol.
, vol.5
, Issue.10
, pp. 801-812
-
-
Suttle, C.A.1
-
81
-
-
0028606283
-
Horizontal gene transfer: evidence and possible consequences
-
Syvanen, M.: Horizontal gene transfer: evidence and possible consequences. Annu. Rev. Genet. 28(1), 237-261 (1994).
-
(1994)
Annu. Rev. Genet.
, vol.28
, Issue.1
, pp. 237-261
-
-
Syvanen, M.1
-
82
-
-
23944475626
-
Mechanisms of, and barriers to, horizontal gene transfer between bacteria
-
Thomas, C. M., Nielsen, K. M.: Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat. Rev., Microbiol. 3(9), 711-721 (2005).
-
(2005)
Nat. Rev., Microbiol.
, vol.3
, Issue.9
, pp. 711-721
-
-
Thomas, C.M.1
Nielsen, K.M.2
-
83
-
-
0029267491
-
Dynamical behaviour of biological regulatory networks. I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state
-
Thomas, R., Thieffry, D., Kaufman, M.: Dynamical behaviour of biological regulatory networks. I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state. Bull. Math. Biol. 57(2), 247-276 (1995).
-
(1995)
Bull. Math. Biol.
, vol.57
, Issue.2
, pp. 247-276
-
-
Thomas, R.1
Thieffry, D.2
Kaufman, M.3
-
84
-
-
13944251386
-
A new computational method for the detection of horizontal gene transfer events
-
Tsirigos, A., Rigoutsos, I.: A new computational method for the detection of horizontal gene transfer events. Nucleic Acids Res. 33(3), 922 (2005).
-
(2005)
Nucleic Acids Res.
, vol.33
, Issue.3
, pp. 922
-
-
Tsirigos, A.1
Rigoutsos, I.2
-
85
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson, G., Chapman, J., Hugenholtz, P., Allen, E., Ram, R., Richardson, P., Solovyev, V., Rubin, E., Rokhsar, D., Banfield, J.: Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428(6978), 37-43 (2004).
-
(2004)
Nature
, vol.428
, Issue.6978
, pp. 37-43
-
-
Tyson, G.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.4
Ram, R.5
Richardson, P.6
Solovyev, V.7
Rubin, E.8
Rokhsar, D.9
Banfield, J.10
-
86
-
-
18844397544
-
Global divergence of microbial genome sequences mediated by propagating fronts
-
Vetsigian, K., Goldenfeld, N.: Global divergence of microbial genome sequences mediated by propagating fronts. Proc. Natl. Acad. Sci. USA 102(20), 7332 (2005).
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, Issue.20
, pp. 7332
-
-
Vetsigian, K.1
Goldenfeld, N.2
-
87
-
-
33746092088
-
Collective evolution and the genetic code
-
Vetsigian, K., Woese, C., Goldenfeld, N.: Collective evolution and the genetic code. Proc. Natl. Acad. Sci. USA 103(28), 10696-10702 (2006).
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, Issue.28
, pp. 10696-10702
-
-
Vetsigian, K.1
Woese, C.2
Goldenfeld, N.3
-
88
-
-
36248936497
-
The road to modularity
-
Wagner, G., Pavlicev, M., Cheverud, J.: The road to modularity. Nat. Rev. Genet. 8(12), 921-931 (2007).
-
(2007)
Nat. Rev. Genet.
, vol.8
, Issue.12
, pp. 921-931
-
-
Wagner, G.1
Pavlicev, M.2
Cheverud, J.3
-
89
-
-
27944442272
-
Quorum sensing: cell-to-cell communication in bacteria
-
Waters, C., Bassler, B.: Quorum sensing: cell-to-cell communication in bacteria. Annu. Rev. Cell Dev. Biol. 21, 319-46 (2005).
-
(2005)
Annu. Rev. Cell Dev. Biol.
, vol.21
, pp. 319-346
-
-
Waters, C.1
Bassler, B.2
-
90
-
-
1942486000
-
Ecology of prokaryotic viruses
-
Weinbauer, M. G.: Ecology of prokaryotic viruses. FEMS Microbiol. Rev. 28(2), 127-181 (2004).
-
(2004)
FEMS Microbiol. Rev.
, vol.28
, Issue.2
, pp. 127-181
-
-
Weinbauer, M.G.1
-
91
-
-
0842266354
-
Are viruses driving microbial diversification and diversity?
-
Weinbauer, M. G., Rassoulzadegan, F.: Are viruses driving microbial diversification and diversity? Environ. Microbiol. 6(1), 1-11 (2004).
-
(2004)
Environ. Microbiol.
, vol.6
, Issue.1
, pp. 1-11
-
-
Weinbauer, M.G.1
Rassoulzadegan, F.2
-
92
-
-
57549111277
-
The dynamic genetic repertoire of microbial communities
-
Wilmes, P., Simmons, S. L., Denef, V. J., Banfield, J. F.: The dynamic genetic repertoire of microbial communities. FEMS Microbiol. Rev. 33(1), 109-132 (2009).
-
(2009)
FEMS Microbiol. Rev.
, vol.33
, Issue.1
, pp. 109-132
-
-
Wilmes, P.1
Simmons, S.L.2
Denef, V.J.3
Banfield, J.F.4
-
93
-
-
0037173066
-
On the evolution of cells
-
Woese, C. R.: On the evolution of cells. Proc. Natl. Acad. Sci. USA 99(13), 8742-8748 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, Issue.13
, pp. 8742-8748
-
-
Woese, C.R.1
-
94
-
-
0017749245
-
The concept of cellular evolution
-
Woese, C. R., Fox, G. E.: The concept of cellular evolution. J. Mol. Evol. 10(1), 1-6 (1977).
-
(1977)
J. Mol. Evol.
, vol.10
, Issue.1
, pp. 1-6
-
-
Woese, C.R.1
Fox, G.E.2
-
95
-
-
0001271789
-
Phylogenetic structure of the prokaryotic domain: the primary kingdoms
-
Woese, C. R., Fox, G. E.: Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc. Natl. Acad. Sci. USA 74(11), 5088 (1977).
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, Issue.11
, pp. 5088
-
-
Woese, C.R.1
Fox, G.E.2
-
96
-
-
0034053846
-
Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process
-
Woese, C. R., Olsen, G. J., Ibba, M., Soll, D.: Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process. Microbiol. Mol. Biol. Rev. 64(1), 202 (2000).
-
(2000)
Microbiol. Mol. Biol. Rev.
, vol.64
, Issue.1
, pp. 202
-
-
Woese, C.R.1
Olsen, G.J.2
Ibba, M.3
Soll, D.4
|