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Volumn 27, Issue 8, 2011, Pages 1170-1171

STOCHSIMGPU: Parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; COMPUTER PROGRAM; COMPUTER SIMULATION; METHODOLOGY; STATISTICS; SYSTEMS BIOLOGY;

EID: 79954530734     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr068     Document Type: Article
Times cited : (33)

References (10)
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  • 2
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    • Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions
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    • (2009) Phys. Biol. , vol.6 , pp. 046001
    • Erban, R.1    Chapman, S.2
  • 3
    • 0001144902 scopus 로고    scopus 로고
    • Efficient exact stochastic simulation of chemical systems with many species and many channels
    • Gibson,M. and Bruck,J. (2000) Efficient exact stochastic simulation of chemical systems with many species and many channels. J. Phy. Chem. A, 104, 1876-1889.
    • (2000) J. Phy. Chem. A , vol.104 , pp. 1876-1889
    • Gibson, M.1    Bruck, J.2
  • 4
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie,D. (1977) Exact stochastic simulation of coupled chemical reactions. J. Phy. Chem., 81, 2340-2361.
    • (1977) J. Phy. Chem. , vol.81 , pp. 2340-2361
    • Gillespie, D.1
  • 5
    • 20844432892 scopus 로고    scopus 로고
    • Stochastic reaction-diffusion simulation with mesord
    • Hattne,J. et al. (2005) Stochastic reaction-diffusion simulation with mesord. Bioinformatics, 21, 2923-2924.
    • (2005) Bioinformatics , vol.21 , pp. 2923-2924
    • Hattne, J.1
  • 6
    • 79954474006 scopus 로고    scopus 로고
    • Fat vs. thin threading approach on GPUs: application to stochastic simulation of chemical reactions
    • in press
    • Klingbeil,G. et al. (2011) Fat vs. thin threading approach on GPUs: application to stochastic simulation of chemical reactions. IEEE Trans. Parallel Distributed Syst. in press.
    • (2011) IEEE Trans. Parallel Distributed Syst.
    • Klingbeil, G.1
  • 8
    • 44849137198 scopus 로고    scopus 로고
    • NVIDIATesla:Aunified graphics and computing architecture
    • Lindholm,E. et al. (2008) NVIDIATesla:Aunified graphics and computing architecture. IEEE Comput. Soc. Hot Chips, 28, 39-45.
    • (2008) IEEE Comput. Soc. Hot Chips , vol.28 , pp. 39-45
    • Lindholm, E.1
  • 9
    • 69949127857 scopus 로고    scopus 로고
    • Efficient stochastic simulation of reaction-diffusion processes via direct compilation
    • Lis,M. et al. (2009). Efficient stochastic simulation of reaction-diffusion processes via direct compilation. Bioinformatics, 25, 2289-2291.
    • (2009) Bioinformatics , vol.25 , pp. 2289-2291
    • Lis, M.1
  • 10
    • 32544443964 scopus 로고    scopus 로고
    • Systems Biology Toolbox for MATLAB: a computational platform for research in Systems Biology
    • Schmidt,H. and Jirstrand,M. (2006) Systems Biology Toolbox for MATLAB: a computational platform for research in Systems Biology. Bioinformatics, 22, 514-515.
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    • Schmidt, H.1    Jirstrand, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.