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Volumn 7, Issue 5, 2011, Pages 1523-1536

Shot-gun proteomic analysis of mitochondrial D-loop DNA binding proteins: Identification of mitochondrial histones

Author keywords

[No Author keywords available]

Indexed keywords

GREEN FLUORESCENT PROTEIN; HISTONE; MITOCHONDRIAL DNA; MITOCHONDRIAL PROTEIN; PROTEOME;

EID: 79954526957     PISSN: 1742206X     EISSN: 17422051     Source Type: Journal    
DOI: 10.1039/c0mb00277a     Document Type: Article
Times cited : (58)

References (50)
  • 1
    • 26944500840 scopus 로고    scopus 로고
    • Replication of mitochondrial DNA occurs by strand displacement with alternative light-strand origins, not via a strand-coupled mechanism
    • DOI 10.1101/gad.1352105
    • T. A. Brown C. Cecconi A. N. Tkachuk C. Bustamante D. A. Clayton Replication of mitochondrial DNA occurs by strand displacement with alternative light-strand origins, not via a strand-coupled mechanism Genes Dev. 2005 19 2466 2476 (Pubitemid 41483694)
    • (2005) Genes and Development , vol.19 , Issue.20 , pp. 2466-2476
    • Brown, T.A.1    Cecconi, C.2    Tkachuk, A.N.3    Bustamante, C.4    Clayton, D.A.5
  • 3
    • 0033595684 scopus 로고    scopus 로고
    • Aging-dependent large accumulation of point mutations in the human mtDNA control region for replication
    • Y. Michikawa F. Mazzucchelli N. Bresolin G. Scarlato G. Attardi Aging-dependent large accumulation of point mutations in the human mtDNA control region for replication Science 1999 286 774 779
    • (1999) Science , vol.286 , pp. 774-779
    • Michikawa, Y.1    Mazzucchelli, F.2    Bresolin, N.3    Scarlato, G.4    Attardi, G.5
  • 4
    • 42049114034 scopus 로고    scopus 로고
    • Transcriptional paradigms in mammalian mitochondrial biogenesis and function
    • DOI 10.1152/physrev.00025.2007
    • R. C. Scarpulla Transcriptional paradigms in mammalian mitochondrial biogenesis and function Physiol. Rev. 2008 88 611 638 (Pubitemid 351520089)
    • (2008) Physiological Reviews , vol.88 , Issue.2 , pp. 611-638
    • Scarpulla, R.C.1
  • 5
    • 2442558106 scopus 로고    scopus 로고
    • Protein components of mitochondrial DNA nucleoids in higher eukaryotes
    • D. F. Bogenhagen Y. Wang E. L. Shen R. Kobayashi Protein components of mitochondrial DNA nucleoids in higher eukaryotes Mol. Cell. Proteomics 2003 2 1205 1216
    • (2003) Mol. Cell. Proteomics , vol.2 , pp. 1205-1216
    • Bogenhagen, D.F.1    Wang, Y.2    Shen, E.L.3    Kobayashi, R.4
  • 8
    • 13344270278 scopus 로고    scopus 로고
    • DNA-binding proteins of mammalian mitochondria
    • DOI 10.1016/j.mito.2004.09.002, PII S1567724904002053
    • M. P. Kutsyi N. A. Gouliaeva E. A. Kuznetsova A. I. Gaziev DNA-binding proteins of mammalian mitochondria Mitochondrion 2005 5 35 44 (Pubitemid 40197723)
    • (2005) Mitochondrion , vol.5 , Issue.1 , pp. 35-44
    • Kutsyi, M.P.1    Gouliaeva, N.A.2    Kuznetsova, E.A.3    Gaziev, A.I.4
  • 9
    • 41249098355 scopus 로고    scopus 로고
    • The layered structure of human mitochondrial DNA nucleoids
    • D. F. Bogenhagen D. Rousseau S. Burke The layered structure of human mitochondrial DNA nucleoids J. Biol. Chem. 2008 283 3665 3675
    • (2008) J. Biol. Chem. , vol.283 , pp. 3665-3675
    • Bogenhagen, D.F.1    Rousseau, D.2    Burke, S.3
  • 10
    • 3042687234 scopus 로고    scopus 로고
    • Identification of protein associations in organelles, using mass spectrometry-based proteomics
    • D. E. Warnock E. Fahy S. W. Taylor Identification of protein associations in organelles, using mass spectrometry-based proteomics Mass Spectrom. Rev. 2004 23 259 280
    • (2004) Mass Spectrom. Rev. , vol.23 , pp. 259-280
    • Warnock, D.E.1    Fahy, E.2    Taylor, S.W.3
  • 11
    • 0034066471 scopus 로고    scopus 로고
    • Membrane proteins and proteomics: Un amour impossible?
    • DOI 10.1002/(SICI)1522-2683(20000401)21:6<1054::AID-ELPS1054>3.0. CO;2-8
    • V. Santoni M. Molloy T. Rabilloud Membrane proteins and proteomics: un amour impossible? Electrophoresis 2000 21 1054 1070 (Pubitemid 30230772)
    • (2000) Electrophoresis , vol.21 , Issue.6 , pp. 1054-1070
    • Santoni, V.1    Molloy, M.2    Rabilloud, T.3
  • 12
    • 0032901126 scopus 로고    scopus 로고
    • Recent developments in two-dimensional gel electrophoresis with immobilized ph gradients: Wide pH gradients up to pH 12, longer separation distances and simplified procedures
    • DOI 10.1002/(SICI)1522-2683(19990101)20:4/5<712::AID-ELPS712>3.0. CO;2-Y
    • A. Gorg C. Obermaier G. Boguth W. Weiss Recent developments in two-dimensional gel electrophoresis with immobilized pH gradients: wide pH gradients up to pH 12, longer separation distances and simplified procedures Electrophoresis 1999 20 712 717 (Pubitemid 29222420)
    • (1999) Electrophoresis , vol.20 , Issue.4-5 , pp. 712-717
    • Gorg, A.1    Obermaier, C.2    Boguth, G.3    Weiss, W.4
  • 14
    • 22044454743 scopus 로고    scopus 로고
    • Analysis of proteome bound to D-loop region of mitochondrial DNA by DNA-linked affinity chromatography and reverse-phase liquid chromatography/ tandem mass spectrometry
    • DOI 10.1196/annals.1338.009
    • Y. S. Choi B. K. Ryu H. K. Min S. W. Lee Y. K. Pak Analysis of proteome bound to D-loop region of mitochondrial DNA by DNA-linked affinity chromatography and reverse-phase liquid chromatography/tandem mass spectrometry Ann. N. Y. Acad. Sci. 2005 1042 88 100 (Pubitemid 40967626)
    • (2005) Annals of the New York Academy of Sciences , vol.1042 , pp. 88-100
    • Choi, Y.-S.1    Ryu, B.-K.2    Min, H.-K.3    Lee, S.-W.4    Pak, Y.K.5
  • 15
    • 0141855260 scopus 로고    scopus 로고
    • Proteomic analysis of acrylamide gel separated proteins immobilized on polyvinylidene difluoride membranes following proteolytic digestion in the presence of 80% acetonitrile
    • DOI 10.1002/pmic.200300529
    • K. Bunai M. Nozaki M. Hamano S. Ogane T. Inoue T. Nemoto H. Nakanishi K. Yamane Proteomic analysis of acrylamide gel separated proteins immobilized on polyvinylidene difluoride membranes following proteolytic digestion in the presence of 80% acetonitrile Proteomics 2003 3 1738 1749 (Pubitemid 37129821)
    • (2003) Proteomics , vol.3 , Issue.9 , pp. 1738-1749
    • Bunai, K.1    Nozaki, M.2    Hamano, M.3    Ogane, S.4    Inoue, T.5    Nemoto, T.6    Nakanishi, H.7    Yamane, K.8
  • 16
    • 35549006797 scopus 로고    scopus 로고
    • Sigma-1 receptor chaperones at the ER-mitochondrion interface regulate Ca(2+) signaling and cell survival
    • DOI 10.1016/j.cell.2007.08.036, PII S0092867407010999
    • T. Hayashi T. P. Su Sigma-1 receptor chaperones at the ER-mitochondrion interface regulate Ca(2+) signaling and cell survival Cell 2007 131 596 610 (Pubitemid 350017760)
    • (2007) Cell , vol.131 , Issue.3 , pp. 596-610
    • Hayashi, T.1    Su, T.-P.2
  • 18
    • 33745487368 scopus 로고    scopus 로고
    • Cell apoptosis: Requirement of H2AX in DNA ladder formation, but not for the activation of caspase-3
    • DOI 10.1016/j.molcel.2006.05.023, PII S1097276506003388
    • C. Lu F. Zhu Y. Y. Cho F. Tang T. Zykova W. Y. Ma A. M. Bode Z. Dong Cell apoptosis: requirement of H2AX in DNA ladder formation, but not for the activation of caspase-3 Mol. Cell 2006 23 121 132 (Pubitemid 43963445)
    • (2006) Molecular Cell , vol.23 , Issue.1 , pp. 121-132
    • Lu, C.1    Zhu, F.2    Cho, Y.-Y.3    Tang, F.4    Zykova, T.5    Ma, W.-Y.6    Bode, A.M.7    Dong, Z.8
  • 19
    • 2942543377 scopus 로고    scopus 로고
    • Expression and radiation-induced phosphorylation of histone H2AX in mammalian cells
    • DOI 10.1269/jrr.44.47
    • K. Yoshida S. H. Yoshida C. Shimoda T. Morita Expression and radiation-induced phosphorylation of histone H2AX in mammalian cells J. Radiat. Res. 2003 44 47 51 (Pubitemid 38738755)
    • (2003) Journal of Radiation Research , vol.44 , Issue.1 , pp. 47-51
    • Yoshida, K.1    Yoshida, S.-H.2    Shimoda, C.3    Morita, T.4
  • 21
    • 41749084159 scopus 로고    scopus 로고
    • Histone H1.2 is translocated to mitochondria and associates with bak in bleomycin-induced apoptotic cells
    • DOI 10.1002/jcb.21537
    • H. Okamura K. Yoshida B. R. Amorim T. Haneji Histone H1.2 is translocated to mitochondria and associates with Bak in bleomycin-induced apoptotic cells J. Cell. Biochem. 2008 103 1488 1496 (Pubitemid 351490717)
    • (2008) Journal of Cellular Biochemistry , vol.103 , Issue.5 , pp. 1488-1496
    • Okamura, H.1    Yoshida, K.2    Amorim, B.R.3    Haneji, T.4
  • 26
    • 0026650828 scopus 로고
    • A new chick mitochondrial DNA-binding protein exhibits sequence-specific interaction near heavy-strand replication origin: Cleavage activity, stimulation of mtDNA synthesis, and enhancement in transformed fibroblasts
    • M. A. D'Agostino M. M. Nass A new chick mitochondrial DNA-binding protein exhibits sequence-specific interaction near heavy-strand replication origin: cleavage activity, stimulation of mtDNA synthesis, and enhancement in transformed fibroblasts Exp. Cell Res. 1992 199 191 205
    • (1992) Exp. Cell Res. , vol.199 , pp. 191-205
    • D'Agostino, M.A.1    Nass, M.M.2
  • 27
    • 0028841899 scopus 로고
    • The mitochondrion as a primary site of action of glucocorticoids: The interaction of the glucocorticoid receptor with mitochondrial DNA sequences showing partial similarity to the nuclear glucocorticoid responsive elements
    • C. Demonacos R. Djordjevic-Markovic N. Tsawdaroglou C. E. Sekeris The mitochondrion as a primary site of action of glucocorticoids: the interaction of the glucocorticoid receptor with mitochondrial DNA sequences showing partial similarity to the nuclear glucocorticoid responsive elements J. Steroid Biochem. Mol. Biol. 1995 55 43 55
    • (1995) J. Steroid Biochem. Mol. Biol. , vol.55 , pp. 43-55
    • Demonacos, C.1    Djordjevic-Markovic, R.2    Tsawdaroglou, N.3    Sekeris, C.E.4
  • 28
    • 0345086454 scopus 로고    scopus 로고
    • Cloning and characterisation of mtDBP, a DNA-binding protein which binds two distinct regions of sea urchin mitochondrial DNA
    • DOI 10.1093/nar/27.8.1890
    • P. Loguercio Polosa M. Roberti C. Musicco M. N. Gadaleta E. Quagliariello P. Cantatore Cloning and characterisation of mtDBP, a DNA-binding protein which binds two distinct regions of sea urchin mitochondrial DNA Nucleic Acids Res. 1999 27 1890 1899 (Pubitemid 29209632)
    • (1999) Nucleic Acids Research , vol.27 , Issue.8 , pp. 1890-1899
    • Loguercio Polosa, P.1    Roberti, M.2    Musicco, C.3    Gadaleta, M.N.4    Quagliariello, E.5    Cantatore, P.6
  • 30
    • 22244479687 scopus 로고    scopus 로고
    • Contrahelicase activity of the mitochondrial transcription termination factor mtDBP
    • DOI 10.1093/nar/gki693
    • P. L. Polosa S. Deceglie M. Roberti M. N. Gadaleta P. Cantatore Contrahelicase activity of the mitochondrial transcription termination factor mtDBP Nucleic Acids Res. 2005 33 3812 3820 (Pubitemid 41418550)
    • (2005) Nucleic Acids Research , vol.33 , Issue.12 , pp. 3812-3820
    • Polosa, P.L.1    Deceglie, S.2    Roberti, M.3    Gadaleta, M.N.4    Cantatore, P.5
  • 31
    • 33845603216 scopus 로고    scopus 로고
    • Nuclear HMGA1 nonhistone chromatin proteins directly influence mitochondrial transcription, maintenance, and function
    • DOI 10.1016/j.yexcr.2006.09.014, PII S0014482706003995
    • G. A. Dement S. C. Maloney R. Reeves Nuclear HMGA1 nonhistone chromatin proteins directly influence mitochondrial transcription, maintenance, and function Exp. Cell Res. 2007 313 77 87 (Pubitemid 44958455)
    • (2007) Experimental Cell Research , vol.313 , Issue.1 , pp. 77-87
    • Dement, G.A.1    Maloney, S.C.2    Reeves, R.3
  • 32
    • 20444422247 scopus 로고    scopus 로고
    • Dynamic mitochondrial localization of nuclear transcription factor HMGA1
    • DOI 10.1016/j.yexcr.2005.04.004, PII S001448270500159X
    • G. A. Dement N. R. Treff N. S. Magnuson V. Franceschi R. Reeves Dynamic mitochondrial localization of nuclear transcription factor HMGA1 Exp. Cell Res. 2005 307 388 401 (Pubitemid 40799364)
    • (2005) Experimental Cell Research , vol.307 , Issue.2 , pp. 388-401
    • Dement, G.A.1    Treff, N.R.2    Magnuson, N.S.3    Franceschi, V.4    Reeves, R.5
  • 33
    • 70450277835 scopus 로고    scopus 로고
    • Mitochondrial localization of PARP-1 requires interaction with mitofilin and is involved in the maintenance of mitochondrial DNA integrity
    • M. N. Rossi M. Carbone C. Mostocotto C. Mancone M. Tripodi R. Maione P. Amati Mitochondrial localization of PARP-1 requires interaction with mitofilin and is involved in the maintenance of mitochondrial DNA integrity J. Biol. Chem. 2009 284 31616 31624
    • (2009) J. Biol. Chem. , vol.284 , pp. 31616-31624
    • Rossi, M.N.1    Carbone, M.2    Mostocotto, C.3    Mancone, C.4    Tripodi, M.5    Maione, R.6    Amati, P.7
  • 35
    • 33845992498 scopus 로고    scopus 로고
    • Expanding the subproteome of the inner mitochondria using protein separation technologies: One-and two-dimensional liquid chromatography and two-dimensional gel electrophoresis
    • DOI 10.1074/mcp.T500036-MCP200
    • T. McDonald S. Sheng B. Stanley D. Chen Y. Ko R. N. Cole P. Pedersen J. E. Van Eyk Expanding the subproteome of the inner mitochondria using protein separation technologies: one- and two-dimensional liquid chromatography and two-dimensional gel electrophoresis Mol. Cell. Proteomics 2006 5 2392 2411 (Pubitemid 46040643)
    • (2006) Molecular and Cellular Proteomics , vol.5 , Issue.12 , pp. 2392-2411
    • McDonald, T.1    Sheng, S.2    Stanley, B.3    Chen, D.4    Ko, Y.5    Cole, R.N.6    Pedersen, P.7    Van Eyk, J.E.8
  • 36
    • 33845417140 scopus 로고    scopus 로고
    • Mild protease treatment as a small-scale biochemical method for mitochondria purification and proteomic mapping of cytoplasm-exposed mitochondrial proteins
    • DOI 10.1021/pr060361z
    • F. Forner E. A. Arriaga M. Mann Mild protease treatment as a small-scale biochemical method for mitochondria purification and proteomic mapping of cytoplasm-exposed mitochondrial proteins J. Proteome Res. 2006 5 3277 3287 (Pubitemid 44904319)
    • (2006) Journal of Proteome Research , vol.5 , Issue.12 , pp. 3277-3287
    • Forner, F.1    Arriaga, E.A.2    Mann, M.3
  • 37
  • 40
    • 77957375417 scopus 로고    scopus 로고
    • Evidence that core histone H3 is targeted to the mitochondria in Brassica oleracea
    • M. K. B. Zanin J. M. Donohue B. A. Everitt Evidence that core histone H3 is targeted to the mitochondria in Brassica oleracea Cell Biol. Int. 2010 34 997 1003
    • (2010) Cell Biol. Int. , vol.34 , pp. 997-1003
    • Zanin, M.K.B.1    Donohue, J.M.2    Everitt, B.A.3
  • 42
    • 0023258478 scopus 로고
    • CAMP-dependent protein kinase isozymes with preference for histone H2B as substrate in mitochondria of bovine heart
    • J. W. Burgess E. W. Yamada cAMP-dependent protein kinase isozymes with preference for histone H2B as substrate in mitochondria of bovine heart Biochem. Cell Biol. 1987 65 137 143 (Pubitemid 17062453)
    • (1987) Biochemistry and Cell Biology , vol.65 , Issue.2 , pp. 137-143
    • Burgess, J.W.1    Yamada, E.W.2
  • 45
    • 0025150997 scopus 로고
    • Import of chemically synthesized signal peptides into rat liver mitochondria
    • Y. K. Pak H. Weiner Import of chemically synthesized signal peptides into rat liver mitochondria J. Biol. Chem. 1990 265 14298 14307
    • (1990) J. Biol. Chem. , vol.265 , pp. 14298-14307
    • Pak, Y.K.1    Weiner, H.2
  • 46
  • 47
    • 44949185670 scopus 로고    scopus 로고
    • Analysis of mitochondrial function in situ in permeabilized muscle fibers, tissues and cells
    • DOI 10.1038/nprot.2008.61, PII NPROT.2008.61
    • A. V. Kuznetsov V. Veksler F. N. Gellerich V. Saks R. Margreiter W. S. Kunz Analysis of mitochondrial function in situ in permeabilized muscle fibers, tissues and cells Nat. Protoc. 2008 3 965 976 (Pubitemid 351818685)
    • (2008) Nature Protocols , vol.3 , Issue.6 , pp. 965-976
    • Kuznetsov, A.V.1    Veksler, V.2    Gellerich, F.N.3    Saks, V.4    Margreiter, R.5    Kunz, W.S.6
  • 49
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • DOI 10.1021/ac025747h
    • A. Keller A. I. Nesvizhskii E. Kolker R. Aebersold Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search Anal. Chem. 2002 74 5383 5392 (Pubitemid 35215372)
    • (2002) Analytical Chemistry , vol.74 , Issue.20 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 50
    • 0032549001 scopus 로고    scopus 로고
    • Rb interacts with histone deacetylase to repress transcription
    • DOI 10.1016/S0092-8674(00)80940-X
    • R. X. Luo A. A. Postigo D. C. Dean Rb interacts with histone deacetylase to repress transcription Cell 1998 92 463 473 (Pubitemid 28101110)
    • (1998) Cell , vol.92 , Issue.4 , pp. 463-473
    • Luo, R.X.1    Postigo, A.A.2    Dean, D.C.3


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