Agos-a universal web tool for GW Argonaute-binding domain prediction

Bioinformatics

Volumn 27, Issue 9, 2011, Pages 1318-1319

  Zielezinski, Andrzej ^a   Karlowski, Wojciech M ^a  

^a ADAM MICKIEWICZ UNIVERSITY   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS;

ARABIDOPSIS PROTEIN; ARGONAUTE PROTEIN;

ALGORITHM; AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; BINDING SITE; COMPUTER PROGRAM; GENETICS; INTERNET; METABOLISM; MOLECULAR GENETICS; PROTEIN BINDING; PROTEIN MOTIF; PROTEIN TERTIARY STRUCTURE;

ALGORITHMS; AMINO ACID MOTIFS; AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; ARGONAUTE PROTEINS; BINDING SITES; INTERNET; MOLECULAR SEQUENCE DATA; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; SOFTWARE;

EID: 79954477414     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr128     Document Type: Article

References (6)

1. Bednenko,J. et al. (2009) Two GW repeat proteins interact with Tetrahymena thermophila argonaute and promote genome rearrangement. Mol. Cell. Biol., 29, 5020-5030.
2. Bies-Etheve,N. et al. (2009) RNA-directed DNA methylation requires an AGO4-interacting member of the SPT5 elongation factor family. EMBO Rep., 10, 649-654.
3. El-Shami,M. et al. (2007) Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components. Genes Dev., 21, 2539-2544.
4. Eulalio,A. et al. (2009) The GW182 protein family in animal cells: new insights into domains required for miRNA-mediated gene silencing. RNA, 15, 1433-1442.
5. He,X. et al. (2009) An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein. Cell, 137, 498-508.
6. Karlowski,W.M. et al. (2010) Genome-wide computational identification of WG/GW Argonaute-binding proteins in Arabidopsis. Nucleic Acids Res., 38, 4231-4245.