메뉴 건너뛰기




Volumn 27, Issue 9, 2011, Pages 1239-1246

A probabilistic model of nuclear import of proteins

Author keywords

[No Author keywords available]

Indexed keywords

EUKARYOTA;

EID: 79954464545     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr121     Document Type: Article
Times cited : (18)

References (32)
  • 1
    • 36749003253 scopus 로고    scopus 로고
    • Cell biology: pore puzzle
    • Aitchison,J.D. and Wozniak,R.W. (2007) Cell biology: pore puzzle. Nature, 450, 621-622.
    • (2007) Nature , vol.450 , pp. 621-622
    • Aitchison, J.D.1    Wozniak, R.W.2
  • 2
    • 36749045172 scopus 로고    scopus 로고
    • The molecular architecture of the nuclear pore complex
    • Alber,F. et al. (2007) The molecular architecture of the nuclear pore complex. Nature, 450, 695-701.
    • (2007) Nature , vol.450 , pp. 695-701
    • Alber, F.1
  • 3
    • 67650718130 scopus 로고    scopus 로고
    • NLStradamus: a simple hidden markov model for nuclear localization signal prediction
    • Ba,A.N.N. et al. (2009) NLStradamus: a simple hidden markov model for nuclear localization signal prediction. BMC Bioinformatics, 10, 202.
    • (2009) BMC Bioinformatics , vol.10 , pp. 202
    • Ba, A.N.N.1
  • 4
    • 0033931867 scopus 로고    scopus 로고
    • Assessing the accuracy of prediction algorithms for classification: an overview
    • Baldi,P. et al. (2000) Assessing the accuracy of prediction algorithms for classification: an overview. Bioinformatics, 16, 412-424.
    • (2000) Bioinformatics , vol.16 , pp. 412-424
    • Baldi, P.1
  • 5
    • 34249846686 scopus 로고    scopus 로고
    • NucPred-predicting nuclear localization of proteins
    • Brameier,M. et al. (2007) NucPred-predicting nuclear localization of proteins. Bioinformatics, 23, 1159-1160.
    • (2007) Bioinformatics , vol.23 , pp. 1159-1160
    • Brameier, M.1
  • 7
    • 0034331073 scopus 로고    scopus 로고
    • Finding nuclear localization signals
    • Cokol,M. et al. (2000) Finding nuclear localization signals. EMBO Rep., 1, 411-415.
    • (2000) EMBO Rep , vol.1 , pp. 411-415
    • Cokol, M.1
  • 8
    • 0032563246 scopus 로고    scopus 로고
    • Crystallographic analysis of the recognition of a nuclear localization signal by the nuclear import factor karyopherin alpha
    • Conti,E. et al. (1998) Crystallographic analysis of the recognition of a nuclear localization signal by the nuclear import factor karyopherin alpha. Cell, 94, 193-204.
    • (1998) Cell , vol.94 , pp. 193-204
    • Conti, E.1
  • 9
    • 49449098182 scopus 로고    scopus 로고
    • What is the expectation maximization algorithm? Nat
    • Do,C.B. and Batzoglou,S. (2008) What is the expectation maximization algorithm? Nat. Biotechnol., 26, 897-899.
    • (2008) Biotechnol , vol.26 , pp. 897-899
    • Do, C.B.1    Batzoglou, S.2
  • 10
    • 0345438685 scopus 로고    scopus 로고
    • ROC graphs: notes and practical considerations for researchers
    • HP Laboratories, California, CA
    • Fawcett,T. (2004) ROC graphs: notes and practical considerations for researchers. Technical Report No. 2003-4, HP Laboratories, California, CA, pp. 1-38.
    • (2004) Technical Report No. 2003-4 , pp. 1-38
    • Fawcett, T.1
  • 11
    • 46249130309 scopus 로고    scopus 로고
    • Towards defining the nuclear proteome
    • Fink,J.L. et al. (2008) Towards defining the nuclear proteome. Genome Biol., 9, R15.1-R15.8.
    • (2008) Genome Biol. , vol.9
    • Fink, J.L.1
  • 12
    • 0041845285 scopus 로고    scopus 로고
    • Structural basis for the specificity of bipartite nuclear localization sequence binding by importin-alpha
    • Fontes,M.R.M. et al. (2003) Structural basis for the specificity of bipartite nuclear localization sequence binding by importin-alpha. J. Biol. Chem., 278, 27981-27987.
    • (2003) J. Biol. Chem. , vol.278 , pp. 27981-27987
    • Fontes, M.R.M.1
  • 13
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • Gavin,A.-C. et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature, 415, 141-147.
    • (2002) Nature , vol.415 , pp. 141-147
    • Gavin, A.-C.1
  • 14
    • 33644555054 scopus 로고    scopus 로고
    • Proteome survey reveals modularity of the yeast cell machinery
    • Gavin,A.-C. et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature, 440, 631-636.
    • (2006) Nature , vol.440 , pp. 631-636
    • Gavin, A.-C.1
  • 15
    • 34248205175 scopus 로고    scopus 로고
    • Predicting nuclear localization
    • Hawkins,J. et al. (2007) Predicting nuclear localization. J. Proteome Res., 6, 1402-1409.
    • (2007) J. Proteome Res. , vol.6 , pp. 1402-1409
    • Hawkins, J.1
  • 16
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identification of protein complexes in saccharomyces cerevisiae by mass spectrometry
    • Ho,Y. et al. (2002) Systematic identification of protein complexes in saccharomyces cerevisiae by mass spectrometry. Nature, 415, 180-183.
    • (2002) Nature , vol.415 , pp. 180-183
    • Ho, Y.1
  • 17
    • 0035847008 scopus 로고    scopus 로고
    • Dissection of a nuclear localization signal
    • Hodel,M. et al. (2001) Dissection of a nuclear localization signal. J. Biol. Chem., 276, 1317-1325.
    • (2001) J. Biol. Chem. , vol.276 , pp. 1317-1325
    • Hodel, M.1
  • 18
    • 0142184341 scopus 로고    scopus 로고
    • Global analysis of protein localization in budding yeast
    • Huh,W.-K. et al. (2003) Global analysis of protein localization in budding yeast. Nature, 425, 686-691.
    • (2003) Nature , vol.425 , pp. 686-691
    • Huh, W.-K.1
  • 19
    • 0035836765 scopus 로고    scopus 로고
    • A comprehensive two-hybrid analysis to explore the yeast protein interactome
    • Ito,T. et al. (2001) A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl Acad. Sci. USA, 98, 4569-4574.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 4569-4574
    • Ito, T.1
  • 20
    • 58149193234 scopus 로고    scopus 로고
    • STRING 8-a global view on proteins and their functional interactions in 630 organisms
    • Jensen,L.J. et al. (2009) STRING 8-a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res., 37, D412-D416.
    • (2009) Nucleic Acids Res , vol.37
    • Jensen, L.J.1
  • 21
    • 58649104919 scopus 로고    scopus 로고
    • Six classes of nuclear localization signals specific to different binding grooves of importin alpha
    • Kosugi,S. et al. (2009a) Six classes of nuclear localization signals specific to different binding grooves of importin alpha. J. Biol. Chem., 284, 478-485.
    • (2009) J. Biol. Chem. , vol.284 , pp. 478-485
    • Kosugi, S.1
  • 22
    • 67649845784 scopus 로고    scopus 로고
    • Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs
    • Kosugi,S. et al. (2009b) Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs. Proc. Natl Acad. Sci. USA, 106, 10171-10176.
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 10171-10176
    • Kosugi, S.1
  • 23
    • 33746776838 scopus 로고    scopus 로고
    • Rules for nuclear localization sequence recognition by karyopherin beta 2
    • Lee,B.J. et al. (2006) Rules for nuclear localization sequence recognition by karyopherin beta 2. Cell, 126, 543-558.
    • (2006) Cell , vol.126 , pp. 543-558
    • Lee, B.J.1
  • 24
    • 0036358995 scopus 로고    scopus 로고
    • The spectrum kernel: a string kernel for SVM protein classification
    • World Scientific Publishing Co
    • Leslie,C. et al. (2002) The spectrum kernel: a string kernel for SVM protein classification. In Proceedings of the Pacific Symposium on Biocomputing, World Scientific Publishing Co., pp. 564-575.
    • (2002) Proceedings of the Pacific Symposium on Biocomputing , pp. 564-575
    • Leslie, C.1
  • 25
    • 79953331874 scopus 로고    scopus 로고
    • Molecular basis for specificity of nuclear import and prediction of nuclear localization
    • Epub ahead of print
    • Marfori,M. et al. (2010) Molecular basis for specificity of nuclear import and prediction of nuclear localization. Biochim. Biophys. Acta. [Epub ahead of print].
    • (2010) Biochim. Biophys. Acta.
    • Marfori, M.1
  • 26
    • 16244398103 scopus 로고    scopus 로고
    • Mimicking cellular sorting improves prediction of subcellular localization
    • Nair,R. and Rost,B. (2005) Mimicking cellular sorting improves prediction of subcellular localization. J. Mol. Biol., 348, 85-100.
    • (2005) J. Mol. Biol. , vol.348 , pp. 85-100
    • Nair, R.1    Rost, B.2
  • 27
    • 0037249644 scopus 로고    scopus 로고
    • NLSdb: database of nuclear localization signals
    • Nair,R. et al. (2003) NLSdb: database of nuclear localization signals. Nucleic Acids Res., 31, 397-399.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 397-399
    • Nair, R.1
  • 28
    • 0032972509 scopus 로고    scopus 로고
    • PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization
    • Nakai,K. and Horton,P. (1999) PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem. Sci., 24, 34-36.
    • (1999) Trends Biochem. Sci. , vol.24 , pp. 34-36
    • Nakai, K.1    Horton, P.2
  • 29
    • 33747872590 scopus 로고    scopus 로고
    • BaCelLo: a balanced subcellular localization predictor
    • Pierleoni,A. et al. (2006) BaCelLo: a balanced subcellular localization predictor. Bioinformatics, 2006, 408-416.
    • (2006) Bioinformatics , vol.2006 , pp. 408-416
    • Pierleoni, A.1
  • 31
    • 33644873184 scopus 로고    scopus 로고
    • BioGRID: a general repository for interaction datasets
    • Stark,C. et al. (2006) BioGRID: a general repository for interaction datasets. Nucleic Acids Res., 34, D535-D539.
    • (2006) Nucleic Acids Res , vol.34
    • Stark, C.1
  • 32
    • 21144439147 scopus 로고    scopus 로고
    • Assessing computational tools for the discovery of transcription factor binding sites
    • Tompa,M. et al. (2005) Assessing computational tools for the discovery of transcription factor binding sites. Nat. Biotechnol., 23, 137-144.
    • (2005) Nat. Biotechnol. , vol.23 , pp. 137-144
    • Tompa, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.