-
1
-
-
36749003253
-
Cell biology: pore puzzle
-
Aitchison,J.D. and Wozniak,R.W. (2007) Cell biology: pore puzzle. Nature, 450, 621-622.
-
(2007)
Nature
, vol.450
, pp. 621-622
-
-
Aitchison, J.D.1
Wozniak, R.W.2
-
2
-
-
36749045172
-
The molecular architecture of the nuclear pore complex
-
Alber,F. et al. (2007) The molecular architecture of the nuclear pore complex. Nature, 450, 695-701.
-
(2007)
Nature
, vol.450
, pp. 695-701
-
-
Alber, F.1
-
3
-
-
67650718130
-
NLStradamus: a simple hidden markov model for nuclear localization signal prediction
-
Ba,A.N.N. et al. (2009) NLStradamus: a simple hidden markov model for nuclear localization signal prediction. BMC Bioinformatics, 10, 202.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 202
-
-
Ba, A.N.N.1
-
4
-
-
0033931867
-
Assessing the accuracy of prediction algorithms for classification: an overview
-
Baldi,P. et al. (2000) Assessing the accuracy of prediction algorithms for classification: an overview. Bioinformatics, 16, 412-424.
-
(2000)
Bioinformatics
, vol.16
, pp. 412-424
-
-
Baldi, P.1
-
5
-
-
34249846686
-
NucPred-predicting nuclear localization of proteins
-
Brameier,M. et al. (2007) NucPred-predicting nuclear localization of proteins. Bioinformatics, 23, 1159-1160.
-
(2007)
Bioinformatics
, vol.23
, pp. 1159-1160
-
-
Brameier, M.1
-
7
-
-
0034331073
-
Finding nuclear localization signals
-
Cokol,M. et al. (2000) Finding nuclear localization signals. EMBO Rep., 1, 411-415.
-
(2000)
EMBO Rep
, vol.1
, pp. 411-415
-
-
Cokol, M.1
-
8
-
-
0032563246
-
Crystallographic analysis of the recognition of a nuclear localization signal by the nuclear import factor karyopherin alpha
-
Conti,E. et al. (1998) Crystallographic analysis of the recognition of a nuclear localization signal by the nuclear import factor karyopherin alpha. Cell, 94, 193-204.
-
(1998)
Cell
, vol.94
, pp. 193-204
-
-
Conti, E.1
-
9
-
-
49449098182
-
What is the expectation maximization algorithm? Nat
-
Do,C.B. and Batzoglou,S. (2008) What is the expectation maximization algorithm? Nat. Biotechnol., 26, 897-899.
-
(2008)
Biotechnol
, vol.26
, pp. 897-899
-
-
Do, C.B.1
Batzoglou, S.2
-
10
-
-
0345438685
-
ROC graphs: notes and practical considerations for researchers
-
HP Laboratories, California, CA
-
Fawcett,T. (2004) ROC graphs: notes and practical considerations for researchers. Technical Report No. 2003-4, HP Laboratories, California, CA, pp. 1-38.
-
(2004)
Technical Report No. 2003-4
, pp. 1-38
-
-
Fawcett, T.1
-
11
-
-
46249130309
-
Towards defining the nuclear proteome
-
Fink,J.L. et al. (2008) Towards defining the nuclear proteome. Genome Biol., 9, R15.1-R15.8.
-
(2008)
Genome Biol.
, vol.9
-
-
Fink, J.L.1
-
12
-
-
0041845285
-
Structural basis for the specificity of bipartite nuclear localization sequence binding by importin-alpha
-
Fontes,M.R.M. et al. (2003) Structural basis for the specificity of bipartite nuclear localization sequence binding by importin-alpha. J. Biol. Chem., 278, 27981-27987.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 27981-27987
-
-
Fontes, M.R.M.1
-
13
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin,A.-C. et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature, 415, 141-147.
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.-C.1
-
14
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin,A.-C. et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature, 440, 631-636.
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.-C.1
-
15
-
-
34248205175
-
Predicting nuclear localization
-
Hawkins,J. et al. (2007) Predicting nuclear localization. J. Proteome Res., 6, 1402-1409.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 1402-1409
-
-
Hawkins, J.1
-
16
-
-
0037050004
-
Systematic identification of protein complexes in saccharomyces cerevisiae by mass spectrometry
-
Ho,Y. et al. (2002) Systematic identification of protein complexes in saccharomyces cerevisiae by mass spectrometry. Nature, 415, 180-183.
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
-
17
-
-
0035847008
-
Dissection of a nuclear localization signal
-
Hodel,M. et al. (2001) Dissection of a nuclear localization signal. J. Biol. Chem., 276, 1317-1325.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 1317-1325
-
-
Hodel, M.1
-
18
-
-
0142184341
-
Global analysis of protein localization in budding yeast
-
Huh,W.-K. et al. (2003) Global analysis of protein localization in budding yeast. Nature, 425, 686-691.
-
(2003)
Nature
, vol.425
, pp. 686-691
-
-
Huh, W.-K.1
-
19
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
Ito,T. et al. (2001) A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl Acad. Sci. USA, 98, 4569-4574.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
-
20
-
-
58149193234
-
STRING 8-a global view on proteins and their functional interactions in 630 organisms
-
Jensen,L.J. et al. (2009) STRING 8-a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res., 37, D412-D416.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Jensen, L.J.1
-
21
-
-
58649104919
-
Six classes of nuclear localization signals specific to different binding grooves of importin alpha
-
Kosugi,S. et al. (2009a) Six classes of nuclear localization signals specific to different binding grooves of importin alpha. J. Biol. Chem., 284, 478-485.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 478-485
-
-
Kosugi, S.1
-
22
-
-
67649845784
-
Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs
-
Kosugi,S. et al. (2009b) Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs. Proc. Natl Acad. Sci. USA, 106, 10171-10176.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 10171-10176
-
-
Kosugi, S.1
-
23
-
-
33746776838
-
Rules for nuclear localization sequence recognition by karyopherin beta 2
-
Lee,B.J. et al. (2006) Rules for nuclear localization sequence recognition by karyopherin beta 2. Cell, 126, 543-558.
-
(2006)
Cell
, vol.126
, pp. 543-558
-
-
Lee, B.J.1
-
24
-
-
0036358995
-
The spectrum kernel: a string kernel for SVM protein classification
-
World Scientific Publishing Co
-
Leslie,C. et al. (2002) The spectrum kernel: a string kernel for SVM protein classification. In Proceedings of the Pacific Symposium on Biocomputing, World Scientific Publishing Co., pp. 564-575.
-
(2002)
Proceedings of the Pacific Symposium on Biocomputing
, pp. 564-575
-
-
Leslie, C.1
-
25
-
-
79953331874
-
Molecular basis for specificity of nuclear import and prediction of nuclear localization
-
Epub ahead of print
-
Marfori,M. et al. (2010) Molecular basis for specificity of nuclear import and prediction of nuclear localization. Biochim. Biophys. Acta. [Epub ahead of print].
-
(2010)
Biochim. Biophys. Acta.
-
-
Marfori, M.1
-
26
-
-
16244398103
-
Mimicking cellular sorting improves prediction of subcellular localization
-
Nair,R. and Rost,B. (2005) Mimicking cellular sorting improves prediction of subcellular localization. J. Mol. Biol., 348, 85-100.
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 85-100
-
-
Nair, R.1
Rost, B.2
-
27
-
-
0037249644
-
NLSdb: database of nuclear localization signals
-
Nair,R. et al. (2003) NLSdb: database of nuclear localization signals. Nucleic Acids Res., 31, 397-399.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 397-399
-
-
Nair, R.1
-
28
-
-
0032972509
-
PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization
-
Nakai,K. and Horton,P. (1999) PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem. Sci., 24, 34-36.
-
(1999)
Trends Biochem. Sci.
, vol.24
, pp. 34-36
-
-
Nakai, K.1
Horton, P.2
-
29
-
-
33747872590
-
BaCelLo: a balanced subcellular localization predictor
-
Pierleoni,A. et al. (2006) BaCelLo: a balanced subcellular localization predictor. Bioinformatics, 2006, 408-416.
-
(2006)
Bioinformatics
, vol.2006
, pp. 408-416
-
-
Pierleoni, A.1
-
31
-
-
33644873184
-
BioGRID: a general repository for interaction datasets
-
Stark,C. et al. (2006) BioGRID: a general repository for interaction datasets. Nucleic Acids Res., 34, D535-D539.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Stark, C.1
-
32
-
-
21144439147
-
Assessing computational tools for the discovery of transcription factor binding sites
-
Tompa,M. et al. (2005) Assessing computational tools for the discovery of transcription factor binding sites. Nat. Biotechnol., 23, 137-144.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 137-144
-
-
Tompa, M.1
|