-
1
-
-
9644272448
-
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
-
Allen E, Xie Z, Gustafson AM, Sung GH, Spatafora JW, and Carrington JC (2004). Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat. Genet. 36: 1282-1290.
-
(2004)
Nat. Genet
, vol.36
, pp. 1282-1290
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Sung, G.H.4
Spatafora, J.W.5
Carrington, J.C.6
-
2
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism and function
-
Bartel DP (2004). MicroRNAs: genomics, biogenesis, mechanism and function. Cell, 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
3
-
-
23844550243
-
Arabidopsis ARGONAUTE1 is an RNA slicer that selectively recruits microRNAs and short interfering RNAs
-
Baumberger N, Baulcombe DC (2005). Arabidopsis ARGONAUTE1 is an RNA slicer that selectively recruits microRNAs and short interfering RNAs. Proc. Natl. Acad. Sci. USA, 102: 11928-11933.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 11928-11933
-
-
Baumberger, N.1
Baulcombe, D.C.2
-
4
-
-
0035905766
-
Role for a bidentate ribonuclease in the initiation step of RNA interference
-
Bernstein E, Caudy AA, Hammond SM, Hannon GJ (2001). Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature, 409: 363-366.
-
(2001)
Nature
, vol.409
, pp. 363-366
-
-
Bernstein, E.1
Caudy, A.A.2
Hammond, S.M.3
Hannon, G.J.4
-
5
-
-
10244243802
-
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences
-
Bonnet E, Wuyts J, Rouze P (2004). Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformation, 20: 2911-2917.
-
(2004)
Bioinformation
, vol.20
, pp. 2911-2917
-
-
Bonnet, E.1
Wuyts, J.2
Rouze, P.3
-
6
-
-
0042810677
-
EST analysis predicts the existence of a population of chimeric microRNA precursor-mRNA transcripts expressed in normal human and mouse tissues
-
Brodersen P, Sakvarelidze-Achard L, Bruun-Rasmussen M, Dunoyer P, Yamamoto YY, Smalheiser NR (2003). EST analysis predicts the existence of a population of chimeric microRNA precursor-mRNA transcripts expressed in normal human and mouse tissues. Genome Biol. 4: p. 403.
-
(2003)
Genome Biol
, vol.4
, pp. 403
-
-
Brodersen, P.1
Sakvarelidze-Achard, L.2
Bruun-Rasmussen, M.3
Dunoyer, P.4
Yamamoto, Y.Y.5
Smalheiser, N.R.6
-
7
-
-
2442681764
-
Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step
-
Chapman EJ, Prokhnevsky AI, Gopinath K, Dolja VV, Carrington JC (2004). Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step. Genes Dev. 18(10): 1179-1186.
-
(2004)
Genes Dev
, vol.18
, Issue.10
, pp. 1179-1186
-
-
Chapman, E.J.1
Prokhnevsky, A.I.2
Gopinath, K.3
Dolja, V.V.4
Carrington, J.C.5
-
8
-
-
29144470346
-
Real-time quantification of micrornas by stem-loop RT-PCR
-
Chen C, Ridzon DA, Broomer AJ, Zhou Z, Lee DH, Nguyen JT, Barbisin M, Xu NL, Mahuvakar VR, Andersen MR, Lao KQ, Livak KJ, Guegler KJ (2005). Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res. 33(20): p. 179.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.20
, pp. 179
-
-
Chen, C.1
Ridzon, D.A.2
Broomer, A.J.3
Zhou, Z.4
Lee, D.H.5
Nguyen, J.T.6
Barbisin, M.7
Xu, N.L.8
Mahuvakar, V.R.9
Andersen, M.R.10
Lao, K.Q.11
Livak, K.J.12
Guegler, K.J.13
-
9
-
-
1642366133
-
A miRNA as a translational repressor of APETALA2 in Arabidopsis flower development
-
Chen X (2004). A miRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science, 303: 2022-2025.
-
(2004)
Science
, vol.303
, pp. 2022-2025
-
-
Chen, X.1
-
10
-
-
34547115664
-
High-throughput sequencing of Arabidopsis microRNAs:Evidence for frequent birth and death of MIRNA genes
-
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM,Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC (2007). High-throughput sequencing of Arabidopsis microRNAs: Evidence for frequent birth and death of MIRNA genes. PLoS One, 2: p. 219.
-
(2007)
PLoS One
, vol.2
, pp. 219
-
-
Fahlgren, N.1
Howell, M.D.2
Kasschau, K.D.3
Chapman, E.J.4
Sullivan, C.M.5
Cumbie, J.S.6
Givan, S.A.7
Law, T.F.8
Grant, S.R.9
Dangl, J.L.10
Carrington, J.C.11
-
11
-
-
57049169777
-
Evolution of Arabidopsis thaliana microRNAs from random sequences
-
Felippes FF, Schneeberger K, Dezulian T, Hudson DH, Weigel D (2008). Evolution of Arabidopsis thaliana microRNAs from random sequences. RNA, 14(12): 2455-2459.
-
(2008)
RNA
, vol.14
, Issue.12
, pp. 2455-2459
-
-
Felippes, F.F.1
Schneeberger, K.2
Dezulian, T.3
Hudson, D.H.4
Weigel, D.5
-
12
-
-
38349169664
-
Mechanisms of post transcriptional regulation by microRNAs: Are the answers in sight?
-
Filipowicz W, Bhattacharyya SN, Sonenberg N (2008). Mechanisms of post transcriptional regulation by microRNAs: are the answers in sight? Nat. Rev. Genet. 9(2): 102-114.
-
(2008)
Nat. Rev. Genet
, vol.9
, Issue.2
, pp. 102-114
-
-
Filipowicz, W.1
Bhattacharyya, S.N.2
Sonenberg, N.3
-
13
-
-
33846904347
-
The miRNA156/157 recognition element in the 3'UTR of the Arabidopsis SBP box gene SPL3 prevents early Flowering by translational inhibition in seedlings
-
Gandikota M, Birkenbihl RP, Hohmann S, Cardon GH, Saedler H, Huijser P (2007). The miRNA156/157 recognition element in the 3' UTR of the Arabidopsis SBP box gene SPL3 prevents early Flowering by translational inhibition in seedlings. Plant J. 49: 683-693.
-
(2007)
Plant J
, vol.49
, pp. 683-693
-
-
Gandikota, M.1
Birkenbihl, R.P.2
Hohmann, S.3
Cardon, G.H.4
Saedler, H.5
Huijser, P.6
-
14
-
-
38549150275
-
MiRBase: Tools for microRNA genomics
-
Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ (2008). miRBase: tools for microRNA genomics.Nucleic Acids Res. 36(1):154-158.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.1
, pp. 154-158
-
-
Griffiths-Jones, S.1
Saini, H.K.2
van Dongen, S.3
Enright, A.J.4
-
15
-
-
0035999463
-
Auxin-responsive gene expression: Genes, promoters and regulatory factors
-
Hagen G, Guilfoyle T (2002). Auxin-responsive gene expression: genes, promoters and regulatory factors. Plant Mol. Biol. 49: 373-385.
-
(2002)
Plant Mol. Biol
, vol.49
, pp. 373-385
-
-
Hagen, G.1
Guilfoyle, T.2
-
16
-
-
0742323351
-
The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation
-
Han MH, Goud S, Song L, Fedoroff N (2004).The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation. Proc. Natl. Acad. Sci. USA. 101:1093-1098.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 1093-1098
-
-
Han, M.H.1
Goud, S.2
Song, L.3
Fedoroff, N.4
-
17
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker L (2003). Vienna RNA secondary structure server. Nucleic Acids Res. 31(13): 3429-3431.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3429-3431
-
-
Hofacker, L.1
-
18
-
-
61349171237
-
Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis
-
Jagadeeswaran G, Saini A, Sunkar R (2009). Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis. Planta, 229: 1009-1014.
-
(2009)
Planta
, vol.229
, pp. 1009-1014
-
-
Jagadeeswaran, G.1
Saini, A.2
Sunkar, R.3
-
20
-
-
0142165224
-
Functional siRNAs and miRNAs exhibit strand bias
-
Khvorova A, Reynolds A, Jayasena SD (2003). Functional siRNAs and miRNAs exhibit strand bias. Cell, 115: 209-216.
-
(2003)
Cell
, vol.115
, pp. 209-216
-
-
Khvorova, A.1
Reynolds, A.2
Jayasena, S.D.3
-
21
-
-
0035955361
-
An abundant class of tiny RNAs with probable regulatory roles in caenorhabditis elegans
-
Lau NC, Weinstein EG, Bartel DP (2001). An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans.Science, 294: 858-862.
-
(2001)
Science
, vol.294
, pp. 858-862
-
-
Lau, N.C.1
Weinstein, E.G.2
Bartel, D.P.3
-
22
-
-
0141843656
-
The nuclear RNase III Drosha initiates microRNA processing
-
Lee Y, Ahn C, Han J, Choi H, Kim J, Yim J, Lee J, Provost P, Rådmark O, Kim S, Kim NV (2003). The nuclear RNase III Drosha initiates microRNA processing. Nat. 425: 415-419.
-
(2003)
Nat
, vol.425
, pp. 415-419
-
-
Lee, Y.1
Ahn, C.2
Han, J.3
Choi, H.4
Kim, J.5
Yim, J.6
Lee, J.7
Provost, P.8
Rådmark, O.9
Kim, S.10
Kim, N.V.11
-
23
-
-
8144225486
-
MicroRNA genes are transcribed by RNA polymerase II
-
Lee Y, Kim M, Han J, Yeom KH, Lee S, Baek SH, Kim VN (2004). MicroRNA genes are transcribed by RNA polymerase II. EMBO J. 23: 4051-4060.
-
(2004)
EMBO J
, vol.23
, pp. 4051-4060
-
-
Lee, Y.1
Kim, M.2
Han, J.3
Yeom, K.H.4
Lee, S.5
Baek, S.H.6
Kim, V.N.7
-
24
-
-
24644490196
-
Elucidation of the Small RNA Component of the Transcriptome
-
Lu C, Tej SS, Luo S, Haudenschild CD, Meyers BC, Green PJ (2005).Elucidation of the small RNA component of the transcriptome. Science, 309(5740):1567-1569.
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1567-1569
-
-
Lu, C.1
Tej, S.S.2
Luo, S.3
Haudenschild, C.D.4
Meyers, B.C.5
Green, P.J.6
-
25
-
-
4444363152
-
MicroRNA control of PHABULOSA in leaf development: Importance of pairing to the microRNA 5' region
-
Mallory AC, Reinhart BJ, Jones-Rhoades MW (2004). MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5' region. EMBO J. 23(16): 3356-3364.
-
(2004)
EMBO J
, vol.23
, Issue.16
, pp. 3356-3364
-
-
Mallory, A.C.1
Reinhart, B.J.2
Jones-Rhoades, M.W.3
-
26
-
-
33745271035
-
Functions of microRNAs and related small RNAs in plants
-
Mallory AC, Vaucheret H (2006). Functions of microRNAs and related small RNAs in plants. Nat. Genet. 38: 31-36.
-
(2006)
Nat. Genet
, vol.38
, pp. 31-36
-
-
Mallory, A.C.1
Vaucheret, H.2
-
27
-
-
34249833259
-
Improvement of somatic embryogenesis and plant recovery in cassava
-
Mathews H, Schopke S, Carcamo R, Chavarriaga P, Fauquet C, Beachy RN (1993). Improvement of somatic embryogenesis and plant recovery in cassava. Plant Cell Rep. 12: 328-333.
-
(1993)
Plant Cell Rep
, vol.12
, pp. 328-333
-
-
Mathews, H.1
Schopke, S.2
Carcamo, R.3
Chavarriaga, P.4
Fauquet, C.5
Beachy, R.N.6
-
28
-
-
0025264854
-
The equilibrium partition function and base pair binding probabilities for RNA secondary structure
-
McCaskill JS (1990). The equilibrium partition function and base pair binding probabilities for RNA secondary structure. Biopolymers, 29 (6-7): 1105-1119.
-
(1990)
Biopolymers
, vol.29
, Issue.6-7
, pp. 1105-1119
-
-
McCaskill, J.S.1
-
29
-
-
60149090481
-
Criteria for Annotation of Plant MicroRNAs
-
Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S,Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, Qi Y, Vaucheret H, Voinnet O, Watanabe Y, Weigel D, Zhu JK (2008). Criteria for Annotation of Plant MicroRNAs. Plant Cell, 20: 3186-3190.
-
(2008)
Plant Cell
, vol.20
, pp. 3186-3190
-
-
Meyers, B.C.1
Axtell, M.J.2
Bartel, B.3
Bartel, D.P.4
Baulcombe, D.5
Bowman, J.L.6
Cao, X.7
Carrington, J.C.8
Chen, X.9
Green, P.J.10
Griffiths-Jones, S.11
Jacobsen, S.E.12
Mallory, A.C.13
Martienssen, R.A.14
Poethig, R.S.15
Qi, Y.16
Vaucheret, H.17
Voinnet, O.18
Watanabe, Y.19
Weigel, D.20
Zhu, J.K.21
more..
-
30
-
-
33747878547
-
Characterization of five microRNA families in maize
-
Mica E, Gianfranceschi L, Enrico Pè M (2006). Characterization of five microRNA families in maize. J. Exp. Bot. 57: 2601-2612.
-
(2006)
J. Exp. Bot
, vol.57
, pp. 2601-2612
-
-
Mica, E.1
Gianfranceschi, L.2
Enrico, P.M.3
-
31
-
-
20444485252
-
The Arabidopsis GAMYB-Like Genes, MYB33 and MYB65, are microRNA-regulated genes that redundantly facilitate anther development
-
Millar AA, Gubler F (2005). The Arabidopsis GAMYB-Like Genes, MYB33 and MYB65, are microRNA-regulated genes that redundantly facilitate anther development. Plant Cell, 17: 705-721.
-
(2005)
Plant Cell
, vol.17
, pp. 705-721
-
-
Millar, A.A.1
Gubler, F.2
-
33
-
-
33645808233
-
The expression profile of microRNAs in mouse embryos
-
Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato (2006). The expression profile of microRNAs in mouse embryos. Nucleic Acids Res. 34(6):1765-1771.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.6
, pp. 1765-1771
-
-
Mineno, J.1
Okamoto, S.2
Ando, T.3
Sato, M.4
Chono, H.5
Izu, H.6
Takayama, M.7
Asada, K.8
Mirochnitchenko, O.9
Inouye, M.10
-
34
-
-
53549106068
-
Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
-
Moxon S, Jing R, Szittya G, Schwach F, Pilcher RLR, Moulton V, Dalmay T (2008). Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome Res.18: 1602-1609.
-
(2008)
Genome Res
, vol.18
, pp. 1602-1609
-
-
Moxon, S.1
Jing, R.2
Szittya, G.3
Schwach, F.4
Pilcher, R.L.R.5
Moulton, V.6
Dalmay, T.7
-
35
-
-
77950086568
-
Control of female gamete formation by a small RNA pathway in Arabidopsis
-
10.1038/nature08828
-
Olmedo-Monfil V, Durán-Figueroa N, Arteaga-Vázquez M, Demesa-Arévalo E, Autran D, Grimanelli D, Slotkin RK, Martienssen RA, Vielle-Calzada JP (2010). Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature doi:10.1038/nature08828.
-
(2010)
Nature
-
-
Olmedo-Monfil, V.1
Durán-Figueroa, N.2
Arteaga-Vázquez, M.3
Demesa-Arévalo, E.4
Autran, D.5
Grimanelli, D.6
Slotkin, R.K.7
Martienssen, R.A.8
Vielle-Calzada, J.P.9
-
36
-
-
0141493493
-
Control of leaf morphogenesis by microRNAs
-
Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D (2003). Control of leaf morphogenesis by microRNAs. Nature, 425: 257-263.
-
(2003)
Nature
, vol.425
, pp. 257-263
-
-
Palatnik, J.F.1
Allen, E.2
Wu, X.3
Schommer, C.4
Schwab, R.5
Carrington, J.C.6
Weigel, D.7
-
37
-
-
34447121300
-
Identification of novel small RNAs in tomato (Solanum lycopersicum)
-
Pilcher RL, Moxon S, Pakseresht N, Moulton V, Manning K, Seymour G, Dalmay T (2007). Identification of novel small RNAs in tomato (Solanum lycopersicum). Planta, 226: 709-717.
-
(2007)
Planta
, vol.226
, pp. 709-717
-
-
Pilcher, R.L.1
Moxon, S.2
Pakseresht, N.3
Moulton, V.4
Manning, K.5
Seymour, G.6
Dalmay, T.7
-
38
-
-
34548289290
-
Bioinformatic identification of microRNAs and their target genes from Solanum tuberosum expressed sequence tags
-
Qiang G, AnLing X, Qing Y, ZhiMin Y (2007). Bioinformatic identification of microRNAs and their target genes from Solanum tuberosum expressed sequence tags. Chin. Sci. Bull. 52(17): 2380-2389.
-
(2007)
Chin. Sci. Bull
, vol.52
, Issue.17
, pp. 2380-2389
-
-
Qiang, G.1
Anling, X.2
Qing, Y.3
Zhimin, Y.4
-
39
-
-
33845688601
-
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
-
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP (2006). A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev. 20: 3407-3425.
-
(2006)
Genes Dev
, vol.20
, pp. 3407-3425
-
-
Rajagopalan, R.1
Vaucheret, H.2
Trejo, J.3
Bartel, D.P.4
-
40
-
-
33745248430
-
MicroRNA target predictions in animals
-
Rajewsky N (2006). MicroRNA target predictions in animals. Nat. Genet. 38: 8-13.
-
(2006)
Nat. Genet
, vol.38
, pp. 8-13
-
-
Rajewsky, N.1
-
41
-
-
0036645146
-
Micro-RNAs in plants
-
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP (2002). Micro-RNAs in plants. Genes Dev. 16:1616-1626.
-
(2002)
Genes Dev
, vol.16
, pp. 1616-1626
-
-
Reinhart, B.J.1
Weinstein, E.G.2
Rhoades, M.W.3
Bartel, B.4
Bartel, D.P.5
-
42
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
-
Rhoades MW, Bartel DP (2004). Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol. Cell, 14: 787-799.
-
(2004)
Mol.Cell
, vol.14
, pp. 787-799
-
-
Rhoades, M.W.1
Bartel, D.P.2
-
43
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP (2002). Prediction of plant microRNA targets. Cell, 110: 513-520.
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.W.1
Reinhart, B.J.2
Lim, L.P.3
Burge, C.B.4
Bartel, B.5
Bartel, D.P.6
-
44
-
-
0033119454
-
Mrnas have greater negative folding free energies than shuffled or codon choice randomized sequences
-
Seffens W, Digby D (1999). mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences. Nucleic Acids Res. 27:1578-1584.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 1578-1584
-
-
Seffens, W.1
Digby, D.2
-
45
-
-
10744225153
-
Asymmetry in the assembly of the RNAi enzyme complex
-
Schwarz DS, Hutvagner G, Du T, Xu Z, Aronin N, Zamore PD (2003). Asymmetry in the assembly of the RNAi enzyme complex. Cell, 115:199-208.
-
(2003)
Cell
, vol.115
, pp. 199-208
-
-
Schwarz, D.S.1
Hutvagner, G.2
du, T.3
Xu, Z.4
Aronin, N.5
Zamore, P.D.6
-
46
-
-
0042810677
-
EST analysis predicts the existence of a population of chimeric microRNA precursor-mRNA transcripts expressed in normal human and mouse tissues
-
Smalheiser NR (2003). EST analysis predicts the existence of a population of chimeric microRNA precursor-mRNA transcripts expressed in normal human and mouse tissues. Genome Biol. 4: p. 403.
-
(2003)
Genome Biol
, vol.4
, pp. 403
-
-
Smalheiser, N.R.1
-
47
-
-
69249229480
-
Identification and characterization of 27 conserved microRNAs in citrus
-
Song C, Fang J, Li X, Liu H, Chao CT (2009). Identification and characterization of 27 conserved microRNAs in citrus. Planta, 230: 671-685.
-
(2009)
Planta
, vol.230
, pp. 671-685
-
-
Song, C.1
Fang, J.2
Li, X.3
Liu, H.4
Chao, C.T.5
-
48
-
-
42549136362
-
Novel and nodulation-regulated microRNAs in soybean roots
-
Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Oliver Y (2009). Novel and nodulation-regulated microRNAs in soybean roots. BMC Genomics, 9: p.160.
-
(2009)
BMC Genomics
, vol.9
, pp. 160
-
-
Subramanian, S.1
Fu, Y.2
Sunkar, R.3
Barbazuk, W.B.4
Zhu, J.K.5
Oliver, Y.6
-
49
-
-
38949194266
-
Computational prediction of Rice (Oryza sativa) miRNA targets
-
Sunil A, Nagaraju J (2007). Computational prediction of Rice (Oryza sativa) miRNA targets. Geno. Prot. Bioinform. 5(3-4): 196-206.
-
(2007)
Geno. Prot. Bioinform
, vol.5
, Issue.3-4
, pp. 196-206
-
-
Sunil, A.1
Nagaraju, J.2
-
50
-
-
22144464033
-
Cloning and characterization of microRNAs from rice
-
Sunkar R, Girke T, Jain PK, Zhu JK (2005). Cloning and characterization of microRNAs from rice. Plant Cell, 17: 1397-1411.
-
(2005)
Plant Cell
, vol.17
, pp. 1397-1411
-
-
Sunkar, R.1
Girke, T.2
Jain, P.K.3
Zhu, J.K.4
-
51
-
-
43149096961
-
In silico identification of conserved microRNAs in large number of diverse plant species
-
Sunkar R, Jagadeeswaran G (2008). In silico identification of conserved microRNAs in large number of diverse plant species. BMC Plant Biol.8: p. 37.
-
(2008)
BMC Plant Biol
, vol.8
, pp. 37
-
-
Sunkar, R.1
Jagadeeswaran, G.2
-
52
-
-
4043074968
-
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
-
Sunkar R, Zhu JK (2004). Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell, 16: 2001-2019.
-
(2004)
Plant Cell
, vol.16
, pp. 2001-2019
-
-
Sunkar, R.1
Zhu, J.K.2
-
53
-
-
34347216713
-
MicroRNAs and short-interfering RNAs in plants
-
Sunkar R, Zhu JK (2007). MicroRNAs and short-interfering RNAs in plants. J. Integr. Plant Biol. 49: 817-826.
-
(2007)
J. Integr. Plant Biol
, vol.49
, pp. 817-826
-
-
Sunkar, R.1
Zhu, J.K.2
-
54
-
-
32644439132
-
MicroRNA expression profiling of single whole embryonic stem cells
-
Tang F, Hajkova P, Barton SC, Lao K, Surani MA (2006). MicroRNA expression profiling of single whole embryonic stem cells. Nucleic Acids Res. 34(2): p. 9.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.2
, pp. 9
-
-
Tang, F.1
Hajkova, P.2
Barton, S.C.3
Lao, K.4
Surani, M.A.5
-
55
-
-
72849108248
-
Review of current methodological approaches for characterizing microRNAs in plants
-
262463
-
Unver T, Namuth-Covert DM, Budak H (2009). Review of current methodological approaches for characterizing microRNAs in plants. Int. J. Plant Genomics, 262463: p. 11.
-
(2009)
Int. J. Plant Genomics
, pp. 11
-
-
Unver, T.1
Namuth-Covert, D.M.2
Budak, H.3
-
56
-
-
38849140922
-
Protocol: A highly sensitive RT-PCR method for detection and quantification of microRNAs
-
10.1186/1746-4811-3-12
-
Varkonyi-Gasic E, Wu R, Wood M, Walton EF, Hellens RP (2007). Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs. doi:10.1186/1746-4811-3-12. Plant Methods, 3: p. 12.
-
(2007)
Plant Methods
, vol.3
, pp. 12
-
-
Varkonyi-Gasic, E.1
Wu, R.2
Wood, M.3
Walton, E.F.4
Hellens, R.P.5
-
57
-
-
2442650370
-
The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development
-
Vaucheret H, Vazquez F, Crete P, Bartel DP (2004). The action of argonaute1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev. 18: 1187-1197.
-
(2004)
Genes Dev
, vol.18
, pp. 1187-1197
-
-
Vaucheret, H.1
Vazquez, F.2
Crete, P.3
Bartel, D.P.4
-
58
-
-
1542350745
-
The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing
-
Vazquez F, Gasciolli V, Crete P, Vaucheret H (2004). The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing. Curr. Biol. 14: 346-351.
-
(2004)
Curr. Biol
, vol.14
, pp. 346-351
-
-
Vazquez, F.1
Gasciolli, V.2
Crete, P.3
Vaucheret, H.4
-
59
-
-
68749100821
-
The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis
-
Wu G, Park MY, Conway SR, Wang JW, Wiegel D, Poethig RS (2009). The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis. Cell, 138:750-759.
-
(2009)
Cell
, vol.138
, pp. 750-759
-
-
Wu, G.1
Park, M.Y.2
Conway, S.R.3
Wang, J.W.4
Wiegel, D.5
Poethig, R.S.6
-
60
-
-
33947411951
-
Computational identification of novel microRNAs and targets in Brassica napus
-
Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM (2007). Computational identification of novel microRNAs and targets in Brassica napus. FEBS Lett. 581:1464-1474.
-
(2007)
FEBS Lett
, vol.581
, pp. 1464-1474
-
-
Xie, F.L.1
Huang, S.Q.2
Guo, K.3
Xiang, A.L.4
Zhu, Y.Y.5
Nie, L.6
Yang, Z.M.7
-
61
-
-
33748314483
-
SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis
-
Yang L, Liu Z, Lu F, Dong A, Huang H (2006). SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis. Plant J. 47: 841-850.
-
(2006)
Plant J
, vol.47
, pp. 841-850
-
-
Yang, L.1
Liu, Z.2
Lu, F.3
Dong, A.4
Huang, H.5
-
62
-
-
39549115890
-
Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
-
10.1186/gb-2007-8-6-r96
-
Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q (2007). Cloning and characterization of microRNAs from wheat (Triticum aestivum L.). Genome Biol. 8: R96. doi: 10.1186/gb-2007-8-6-r96.
-
(2007)
Genome Biol
, vol.8
, pp. 96
-
-
Yao, Y.1
Guo, G.2
Ni, Z.3
Sunkar, R.4
Du, J.5
Zhu, J.K.6
Sun, Q.7
-
63
-
-
0347361541
-
Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs
-
Yi R, Qin Y, Macara IG, Cullen BR (2003). Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs. Genes Dev. 17(24): 3011-3016.
-
(2003)
Genes Dev
, vol.17
, Issue.24
, pp. 3011-3016
-
-
Yi, R.1
Qin, Y.2
Macara, I.G.3
Cullen, B.R.4
-
64
-
-
13644256193
-
Methylation as a crucial step in plant microRNA biogenesis
-
Yu B, Yang Z, Li J, Minakhina S, Yang M, Padgett RW, Steward R, Chen X (2005). Methylation as a crucial step in plant microRNA biogenesis. Science, 307: 932-935.
-
(2005)
Science
, vol.307
, pp. 932-935
-
-
Yu, B.1
Yang, Z.2
Li, J.3
Minakhina, S.4
Yang, M.5
Padgett, R.W.6
Steward, R.7
Chen, X.8
-
65
-
-
27844495281
-
Identification and characterization of new plant microRNAs using EST analysis
-
Zhang BH, Pan XP, Cannon CH, Cobb GP, Anderson TA (2005). Identification and characterization of new plant microRNAs using EST analysis. Cell Res. 15: 336-360.
-
(2005)
Cell Res
, vol.15
, pp. 336-360
-
-
Zhang, B.H.1
Pan, X.P.2
Cannon, C.H.3
Cobb, G.P.4
Anderson, T.A.5
-
66
-
-
30744468557
-
Evidence that miRNAs are different from other RNAs
-
Zhang B H, Pan X P, Cox B (2006). Evidence that miRNAs are different from other RNAs. Cell Mol. Life Sci. 63: 246-254.
-
(2006)
Cell Mol. Life Sci
, vol.63
, pp. 246-254
-
-
Zhang, B.H.1
Pan, X.P.2
Cox, B.3
-
67
-
-
56649120500
-
Identification of soybean microRNAs and their targets
-
Zhang BH, Pan XP, Stellwag EJ (2008). Identification of soybean microRNAs and their targets. Planta, 229: 161-182.
-
(2008)
Planta
, vol.229
, pp. 161-182
-
-
Zhang, B.H.1
Pan, X.P.2
Stellwag, E.J.3
-
68
-
-
23144458275
-
Miru: An automated plant mirna target prediction server
-
Zhang Y (2005). miRU: an automated plant miRNA target prediction server. Nucleic Acids Res. 33(2):701-704.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.2
, pp. 701-704
-
-
Zhang, Y.1
-
69
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M (2003). Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31(13): 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3406-3415
-
-
Zuker, M.1
-
70
-
-
0019876473
-
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
-
Zuker M, Stiegler P (1981). Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res. 9(1): 133-148.
-
(1981)
Nucleic Acids Res
, vol.9
, Issue.1
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
|