Peptide array-based peptide-cell interaction analysis

Mini-Reviews in Organic Chemistry

Volumn 8, Issue 2, 2011, Pages 171-177

  Kato, Ryuji ^a   Kaga, Chiaki ^a   Kanie, Kei ^a   Kunimatsu, Mitoshi ^b   Okochi, Mina ^a   Honda, Hiroyuki ^a  

^a NAGOYA UNIVERSITY   (Japan)

^b NAGOYA WOMEN'S UNIVERSITY   (Japan)

Author keywords

Bioinformatics; Cell adhesion; Cell assay; Cell proliferation; Cell specificity

Indexed keywords

BIOINFORMATICS; CELL PROLIFERATION; MEDICAL APPLICATIONS; PEPTIDES;

ARRAY-TYPE; CELL ASSAYS; CELL INTERACTION; CELL SPECIFICITY; CELLS ADHESION; INTERACTION ANALYSIS; PEPTIDE ARRAYS; RESEARCH TOOLS;

CELL ADHESION;

EID: 79953839426     PISSN: 1570193X     EISSN: None     Source Type: Journal    
DOI: 10.2174/157019311795177790     Document Type: Article

References (21)

1. Vagner, J.; Qu, H.; Hruby, V.J. Peptidomimetics, a synthetic tool of drug discovery. Curr. Opin. Chem. Biol., 2008, 12, 292-296.
2. Koide, T. Designed triple-helical peptides as tools for collagen biochemistry and matrix engineering. Philos. Trans. R. Soc. Lond. B. Biol. Sci., 2007, 362, 1281-1291.
3. Ramachandran, S.; Yu, Y.B. Peptide-based viscoelastic matrices for drug delivery and tissue repair. Bio Drugs, 2006, 20, 263-269.
4. Qiu, X.Q.; Wang, H.; Cai, B.; Wang, L.L.; Yue, S.T. Small antibody mimetics comprising two complementarity-determining regions and a framework region for tumor targeting. Nat. Biotechnol., 2007, 25, 921-929.
5. Frank, R. The spot-synthesis technique. Synthetic peptide arrays on membrane supports-principles and applications. J. Immunol. Methods., 2002, 267, 13-26.
6. Otvos, L., Jr.; Pease, A.M.; Bokonyi, K.; Giles-Davis, W.; Rogers, M.E.; Hintz, P.A.; Hoffmann, R.; Ertl, H.C. In situ stimulation of a t helper cell hybridoma with a cellulose-bound peptide antigen. J. Immunol. Methods., 2000, 233, 95-105.
7. Kato, R.; Kaga, C.; Kunimatsu, M.; Kobayashi, T.; Honda, H. Peptide arraybased interaction assay of solid-bound peptides and anchorage-dependant cells and its effectiveness in cell-adhesive peptide design. J. Biosci. Bioeng., 2006, 101, 485-495.
8. Kaga, C.; Okochi, M.; Tomita, Y.; Kato, R.; Honda, H. Computationally assisted screening and design of cell-interactive peptides by a cell-based assay using peptide arrays and a fuzzy neural network algorithm. Biotechniques, 2008, 44, 393-402.
9. Kaga, C.; Nomura, S.; Okochi, M.; Nozu, t.; Nagao, T.; Nagai, A.; Nakamura, T.; Suzuki, K.; Honda, H. Screening of epithelial cell-adhesive peptides from fibronectin loop region and its cell specificity. J. Chem. Eng. J., 2009, 42, 298-302.
10. Okochi, M.; Nomura, S.; Kaga, C.; Honda, H. Peptide array-based screening of human mesenchymal stem cell-adhesive peptides derived from fibronectin type iii domain. Biochem. Biophys. Res. Commun., 2008, 371, 85-89.
11. Kato, R.; Okuno, Y.; Kaga, C.; Kunimatsu, M.; Kobayashi, T.; Honda, H. Pentamer peptide from fas antigen ligand inhibits tumor-growth with solidbound form found by peptide array. J. Pept. Res., 2005, 66 (Suppl 1), 146-153.
12. Okochi, M.; Nakanishi, M.; Kato, R.; Kobayashi, T.; Honda, H. Highthroughput screening of cell death inducible short peptides from tnf-related apoptosis-inducing ligand sequence. FEBS Lett., 2006, 580, 885-889.
13. Kaga, C.; Okochi, M.; Nakanishi, M.; Hayashi, H.; Kato, R.; Honda, H. Screening of a novel octamer peptide, cnscwskd, that induces caspasedependent cell death. Biochem. Biophys. Res. Commun., 2007, 362, 1063-1068.
14. Pierschbacher, M.; Hayman, E.G.; Ruoslahti, E. Synthetic peptide with cell attachment activity of fibronectin. Proc. Natl. Acad. Sci. U. S. A., 1983, 80, 1224-1227.
15. Aota, S.; Nomizu, M.; Yamada, K.M. The short amino acid sequence prohis-ser-arg-asn in human fibronectin enhances cell-adhesive function. J. Biol. Chem., 1994, 269, 24756-24761.
16. Adams, J.D.; Garcia, L.M.; Kern, J.A. Endovascular repair of the thoracic aorta. Surg. Clin. North. Am., 2009, 89, 895-912, ix.
17. Yin, M.; Yuan, Y.; Liu, C.; Wang, J. Combinatorial coating of adhesive polypeptide and anti-cd34 antibody for improved endothelial cell adhesion and proliferation. J. Mater. Sci. Mater. Med., 2009, 20, 1513-1523.
18. Kleinman, H.K.; Murray, J.C.; McGoodwin, E.B.; Martin, G.R. Connective tissue structure: Cell binding to collagen. J. Invest. Dermatol., 1978, 71, 9-11.
19. Lee, H.O.; Ferguson, T.A. Biology of fasl. Cytokine Growth Factor Rev., 2003, 14, 325-335.
20. Wiley, S.R.; Schooley, K.; Smolak, P.J.; Din, W.S.; Huang, C.P.; Nicholl, J.K.; Sutherland, G.R.; Smith, T.D.; Rauch, C.; Smith, C.A.; Goodwin, R.G. Identification and characterization of a new member of the TNF family that induces apoptosis. Immunity, 1995, 3, 673-682.
21. Kato, R.; Nakano, H.; Konishi, H.; Kato, K.; Koga, Y.; Yamane, T.; Kobayashi, T.; Honda, H. Novel strategy for protein exploration: High-throughput screening assisted with fuzzy neural network. J. Mol. Biol., 2005, 351, 683-692.