-
1
-
-
14244272868
-
PHENIX: Building new software for automated crystallographic structure determination
-
DOI 10.1107/S0907444902016657
-
Adams PD, Grosse-Kunstleve RW, Hung L-W, Ioerger TR, McCoy AJ, Moriarty NW, Read RJ, Sacchettini JC, Sauter NK, Terwilliger TC,. 2002. PHENIX: building new software for automated crystallographic structure determination. Acta Crystallogr. D58: 1948-1954. (Pubitemid 35337293)
-
(2002)
Acta Crystallographica Section D: Biological Crystallography
, vol.58
, Issue.11
, pp. 1948-1954
-
-
Adams, P.D.1
Grosse-Kunstleve, R.W.2
Hung, L.-W.3
Ioerger, T.R.4
McCoy, A.J.5
Moriarty, N.W.6
Read, R.J.7
Sacchettini, J.C.8
Sauter, N.K.9
Terwilliger, T.C.10
-
2
-
-
0028103275
-
The CCP4 suit: Programs for protein crystallography
-
Bailey S,. 1994. The CCP4 suit: programs for protein crystallography. Acta Crystallogr. D50: 760-763.
-
(1994)
Acta Crystallogr.
, vol.50 D
, pp. 760-763
-
-
Bailey, S.1
-
3
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen HJC, Postma JPM, DiNola A, Haak JR,. 1984. Molecular dynamics with coupling to an external bath. J. Chem. Phys. 81: 3684-3690.
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Dinola, A.3
Haak, J.R.4
-
4
-
-
33846086933
-
Canonical sampling through velocity rescaling
-
Bussi G, Donadio D, Parrinello M,. 2007. Canonical sampling through velocity rescaling. J. Chem. Phys. 126: 014101.
-
(2007)
J. Chem. Phys.
, vol.126
, pp. 014101
-
-
Bussi, G.1
Donadio, D.2
Parrinello, M.3
-
5
-
-
33846823909
-
Particle mesh Ewald: An N-log(N) method for Ewald sums in large systems
-
Darden T, York D, Pedersen L,. 1993. Particle mesh Ewald: an N-log(N) method for Ewald sums in large systems. J. Chem. Phys. 98: 10089-10092.
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
6
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann U, Perera L, Berkowitz ML, Darden T, Lee H, Pedersen LG,. 1995. A smooth particle mesh Ewald method. J. Chem. Phys. 103: 8577-8593.
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
7
-
-
0028153879
-
Autogenous translational regulation of the ribosomal MvaL1 operon in the archaebacterium Methanococcus vannielii
-
Hanner M, Mayer C, Köhrer C, Golderer G, Gröbner P, Piendl W,. 1994. Autogenous translational regulation of the ribosomal MvaL1 operon in the archaebacterium Methanococcus vannielii. J. Bacteriol. 176: 409-418. (Pubitemid 24034059)
-
(1994)
Journal of Bacteriology
, vol.176
, Issue.2
, pp. 409-418
-
-
Hanner, M.1
Mayer, C.2
Kohrer, C.3
Golderer, G.4
Grobner, P.5
Piendl, W.6
-
8
-
-
0000388705
-
LINCS: A Linear Constraint Solver for molecular simulations
-
Hess B, Bekker H, Berendsen HJC, Fraaije JEM,. 1997. LINCS: a linear constraint solver for molecular simulations. J. Comput. Chem. 18: 1463-1472. (Pubitemid 127637344)
-
(1997)
Journal of Computational Chemistry
, vol.18
, Issue.12
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.G.E.M.4
-
9
-
-
0024520745
-
Site-directed mutagenesis by overlap extension using the polymerase chain reaction
-
DOI 10.1016/0378-1119(89)90358-2
-
Ho SN, Hunt HD, Horton RM, Pullen JK, Pease LR,. 1989. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77: 51-59. (Pubitemid 19125653)
-
(1989)
Gene
, vol.77
, Issue.1
, pp. 51-59
-
-
Ho, S.N.1
Hunt, H.D.2
Horton, R.M.3
Pullen, J.K.4
Pease, L.R.5
-
10
-
-
0030047142
-
Errors in protein structures
-
Hooft RWW, Vriend G, Sander C, Abola EE,. 1996. Errors in protein structures. Nature 381: 272-272.
-
(1996)
Nature
, vol.381
, pp. 272-272
-
-
Hooft, R.W.W.1
Vriend, G.2
Sander, C.3
Abola, E.E.4
-
11
-
-
0029912748
-
Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids
-
DOI 10.1021/ja9621760, PII S0002786396021762
-
Jorgensen WL, Maxwell DS, Tirado-Rives J,. 1996. Development and testing of the OPLS all-atom force field on conformational energetic and properties of organic liquids. J. Am. Chem. Soc. 118: 11225-11236. (Pubitemid 26399746)
-
(1996)
Journal of the American Chemical Society
, vol.118
, Issue.45
, pp. 11225-11236
-
-
Jorgensen, W.L.1
Maxwell, D.S.2
Tirado-Rives, J.3
-
12
-
-
0038786304
-
Integration, scaling, space-group assignment and post refinement. XDS
-
vol. F, Rossmann M.G., Arnold E. (eds). Kluwer Academic Publishers: Dordrecht
-
Kabsch W,. 2001. Integration, scaling, space-group assignment and post refinement. XDS. In International Tables for Crystallography, vol. F, Rossmann MG, Arnold E, (eds). Kluwer Academic Publishers: Dordrecht.
-
(2001)
International Tables for Crystallography
-
-
Kabsch, W.1
-
13
-
-
0036351172
-
Kinetic studies of RNA-protein interactions using surface plasmon resonance
-
DOI 10.1016/S1046-2023(02)00012-9, PII S1046202302000129
-
Katsamba PS, Park S, Laird-Offringa IA,. 2002. Kinetic studies of RNA-protein interactions using surface plasmon resonance. Methods 26: 95-104. (Pubitemid 34969571)
-
(2002)
Methods
, vol.26
, Issue.2
, pp. 95-104
-
-
Katsamba, P.S.1
Park, S.2
Laird-Offringa, I.A.3
-
14
-
-
0032528883
-
Interaction of ribosomal L1 proteins from mesophilic and thermophilic Archaea and Bacteria with specific L1-binding sites on 23S rRNA and mRNA
-
DOI 10.1046/j.1432-1327.1998.2560097.x
-
Köhrer C, Mayer C, Neumair O, Gröbner P, Piendl W,. 1998. Interaction of ribosomal L1 proteins from mesophilic and thermophilic Archaea and Bacteria with specific L1-binding sites on 23S rRNA and mRNA. Eur. J. Biochem. 256: 97-105. (Pubitemid 28399100)
-
(1998)
European Journal of Biochemistry
, vol.256
, Issue.1
, pp. 97-105
-
-
Kohrer, C.1
Mayer, C.2
Neumair, O.3
Grobner, P.4
Piendl, W.5
-
15
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski RA, MacArthur MW, Moss DS, Thornton JM,. 1993. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26: 283-291.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
16
-
-
0035789518
-
GROMACS 3.0: A package for molecular simulation and trajectory analysis
-
DOI 10.1007/S008940100045
-
Lindahl E, Hess B, Van der Spoel D,. 2001. GROMACS 3.0: a package for molecular simulation and trajectory analysis. J. Mol. Model. 7: 306-317. (Pubitemid 36153547)
-
(2001)
Journal of Molecular Modeling
, vol.7
, Issue.8
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
Van Der Spoel, D.3
-
17
-
-
23844546311
-
Likelihood-enhanced fast translation functions
-
DOI 10.1107/S0907444905001617
-
McCoy AJ, Grosse-Kunstleve RW, Storoni LC, Read RJ,. 2005. Likelihood-enhanced fast translation functions. Acta Crystallogr. D61: 458-464. (Pubitemid 43934606)
-
(2005)
Acta Crystallographica Section D: Biological Crystallography
, vol.61
, Issue.4
, pp. 458-464
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Storoni, L.C.3
Read, R.J.4
-
18
-
-
0034655657
-
Archaeal ribosomal protein L1: The structure provides new insights into RNA binding of the L1 protein family
-
DOI 10.1016/S0969-2126(00)00116-7
-
Nevskaya N, Tishchenko S, Fedorov R, Al-Karadaghi S, Lilyas A, Kraft A, Piendl W, Garber M, Nikonov S,. 2000. Archaeal ribosomal protein L1: the structure provides new insights into RNA binding of the L1 protein family. Structure 8: 363-371. (Pubitemid 30202897)
-
(2000)
Structure
, vol.8
, Issue.4
, pp. 363-371
-
-
Nevskaya, N.1
Tishchenko, S.2
Fedorov, R.3
Al-Karadaghi, S.4
Liljas, A.5
Kraft, A.6
Piendl, W.7
Garber, M.8
Nikonov, S.9
-
19
-
-
20144377686
-
Ribosomal protein L1 recognizes the same specific structural motif in its target sites on the autoregulatory mRNA and 23S rRNA
-
DOI 10.1093/nar/gki194
-
Nevskaya N, Tishchenko S, Gabdoulkhakov A, Nikonova E, Nikonov O, Nikulin A, Platonova O, Garber M, Nikonov S, Piendl W,. 2005. Ribosomal protein L1 recognizes the same specific structural motif in its target sites on the autoregulatory mRNA and 23S rRNA. Nucleic Acids Res. 33: 478-485. (Pubitemid 40360977)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.2
, pp. 478-485
-
-
Nevskaya, N.1
Tishchenko, S.2
Gabdoulkhakov, A.3
Nikonova, E.4
Nikonov, O.5
Nikulin, A.6
Platonova, O.7
Garber, M.8
Nikonov, S.9
Piendl, W.10
-
20
-
-
0036616778
-
Structure of ribosomal protein L1 from Methanococcus thermolithotrophicus. Functionally important structural invariants on the L1 surface
-
DOI 10.1107/S0907444902006157
-
Nevskaya N, Tishchenko S, Paveliev M, Smolinskaya Yu, Fedorov R, Piendl W, Nakamura Y, Toyoda T, Garber M, Nikonov S,. 2002. Structure of ribosomal protein L1 from Methanococcus thermolithotrophicus. Functionally important structural invariants on the L1 surface. Acta Crystallogr. D58: 1023-1029. (Pubitemid 34653032)
-
(2002)
Acta Crystallographica Section D: Biological Crystallography
, vol.58
, Issue.6 II
, pp. 1023-1029
-
-
Nevskaya, N.1
Tishchenko, S.2
Paveliev, M.3
Smolinskaya, Y.4
Fedorov, R.5
Piendl, W.6
Nakamura, Y.7
Toyoda, T.8
Garber, M.9
Nikonov, S.10
-
21
-
-
29144532514
-
New insights into the interaction of ribosomal protein L1 with RNA
-
DOI 10.1016/j.jmb.2005.10.084, PII S0022283605013690
-
Nevskaya N, Tishchenko S, Volchkov S, Kljashtorny V, Nikonova E, Nikonov O, Nikulin A, Köhrer C, Piendl W, Zimmermann R, Stockley P, Garber M, Nikonov S,. 2006. New insights into interaction of ribosomal protein L1 with RNA. J. Mol. Biol. 355: 747-759. (Pubitemid 41817633)
-
(2006)
Journal of Molecular Biology
, vol.355
, Issue.4
, pp. 747-759
-
-
Nevskaya, N.1
Tishchenko, S.2
Volchkov, S.3
Kljashtorny, V.4
Nikonova, E.5
Nikonov, O.6
Nikulin, A.7
Kohrer, C.8
Piendl, W.9
Zimmermann, R.10
Stockley, P.11
Garber, M.12
Nikonov, S.13
-
22
-
-
0018369620
-
Total reconstitution of 50S subunits from Escherichia coli ribosomes
-
Nierhaus KH, Dohme F,. 1979. Total reconstitution of 50S subunits from Escherichia coli ribosomes. Meth. Enzymol. 59: 443-449.
-
(1979)
Meth. Enzymol.
, vol.59
, pp. 443-449
-
-
Nierhaus, K.H.1
Dohme, F.2
-
23
-
-
9044249328
-
Crystal structure of the RNA binding ribosomal protein L1 from Thermus thermophilus
-
Nikonov S, Nevskaya N, Eliseikina I, Fomenkova N, Nikulin A, Ossina N, Garber M, Jonsson B-H, Briand C, Svensson A, Aevarsson A, Liljas A,. 1996. Crystal structure of the RNA-binding ribosomal protein L1 from Thermus thermophilus. EMBO J. 15: 1350-1359. (Pubitemid 26093471)
-
(1996)
EMBO Journal
, vol.15
, Issue.6
, pp. 1350-1359
-
-
Nikonov, S.1
Nevskaya, N.2
Eliseikina, I.3
Fomenkova, N.4
Nikulin, A.5
Ossina, N.6
Garber, M.7
Jonsson, B.-H.8
Briand, C.9
Al-Karadaghi, S.10
Svensson, A.11
Evarsson, A.12
Liljas, A.13
-
24
-
-
34548385363
-
Crystal structures of mutant ribosomal proteins L1
-
Nikonova E, Volchkov S, Kljashtorny V, Tishchenko S, Kostareva O, Nevskaya N, Nikonov O, Gabdoulkhakov A, Nikulin A, Davydova N, Streltsov V, Garber M, Nikonov S,. 2007. Crystal structures of mutant ribosomal proteins L1. Mol. Boil. (Mosk.) 41: 688-696.
-
(2007)
Mol. Boil. (Mosk.)
, vol.41
, pp. 688-696
-
-
Nikonova, E.1
Volchkov, S.2
Kljashtorny, V.3
Tishchenko, S.4
Kostareva, O.5
Nevskaya, N.6
Nikonov, O.7
Gabdoulkhakov, A.8
Nikulin, A.9
Davydova, N.10
Streltsov, V.11
Garber, M.12
Nikonov, S.13
-
25
-
-
0037312936
-
Structure of the L1 protuberance in the ribosome
-
DOI 10.1038/nsb886
-
Nikulin A, Eliseikina I, Tishchenko S, Nevskaya N, Davydova N, Platonova O, Piendl W, Selmer M, Liljas A, Drygin D, Zimmermann R, Garber M, Nikonov S,. 2003. Structure of the L1 protuberance in the ribosome. Nat. Struct. Biol. 10: 104-108. (Pubitemid 36177089)
-
(2003)
Nature Structural Biology
, vol.10
, Issue.2
, pp. 104-108
-
-
Nikulin, A.1
Eliseikina, I.2
Tishchenko, S.3
Nevskaya, N.4
Davydova, N.5
Platonova, O.6
Piendl, W.7
Selmer, M.8
Liljas, A.9
Drygin, D.10
Zimmermann, R.11
Garber, M.12
Nikonov, S.13
-
26
-
-
52949113416
-
Domain II of Thermus thermophilus ribosomal protein L1 hinders recognition of its mRNA
-
Tishchenko S, Kljashtorny V, Kostareva O, Nevskaya N, Nikulin A, Gulak P, Piendl W, Garber M, Nikonov S,. 2008. Domain II of Thermus thermophilus ribosomal protein L1 hinders recognition of its mRNA. J. Mol. Biol. 383: 301-305.
-
(2008)
J. Mol. Biol.
, vol.383
, pp. 301-305
-
-
Tishchenko, S.1
Kljashtorny, V.2
Kostareva, O.3
Nevskaya, N.4
Nikulin, A.5
Gulak, P.6
Piendl, W.7
Garber, M.8
Nikonov, S.9
-
27
-
-
37549038617
-
Domain i of ribosomal protein L1 is sufficient for specific RNA binding
-
Tishchenko S, Nikonova E, Kljashtorny V, Kostareva O, Nevskaya N, Piendl W, Davydova N, Streltsov V, Garber M, Nikonov S,. 2007. Domain I of ribosomal protein L1 is sufficient for specific RNA binding. Nucleic Acids Res. 35: 7389-7395.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 7389-7395
-
-
Tishchenko, S.1
Nikonova, E.2
Kljashtorny, V.3
Kostareva, O.4
Nevskaya, N.5
Piendl, W.6
Davydova, N.7
Streltsov, V.8
Garber, M.9
Nikonov, S.10
-
28
-
-
33845479041
-
Structure of the ribosomal protein L1-mRNA complex at 2.1 A resolution: Common features of crystal packing of L1-RNA complexes
-
DOI 10.1107/S0907444906041655
-
Tishchenko S, Nikonova E, Nikulun A, Nevskaya N, Volchkov S, Piendl W, Garber M, Nikonov S,. 2006. Structure of ribosomal protein L1-mRNA complex at 2.1 Å resolution. Common features of crystal packing of L1-RNA complexes. Acta crystallogr. D62: 1545-1554. (Pubitemid 44915600)
-
(2006)
Acta Crystallographica Section D: Biological Crystallography
, vol.62
, Issue.12
, pp. 1545-1554
-
-
Tishchenko, S.1
Nikonova, E.2
Nikulin, A.3
Nevskaya, N.4
Volchkov, S.5
Piendl, W.6
Garber, M.7
Nikonov, S.8
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