Dispersions based on noble metal nanoparticles-DNA conjugates

Advances in Colloid and Interface Science

Volumn 163, Issue 2, 2011, Pages 123-143

  Capek, Ignác ^a  

^a POLYMER INSTITUTE   (Slovakia)

Author keywords

DNA; DNA AuNP nanoconjugates and nanoconstructs; Gold nanoparticles; Interactions; Surfactant

Indexed keywords

ASSAYS; ASSOCIATION REACTIONS; BEAM PLASMA INTERACTIONS; BINDING ENERGY; BIOCOMPATIBILITY; BIOMOLECULES; BUILDING MATERIALS; DISPERSIONS; DNA; DNA SEQUENCES; GENES; GOLD NANOPARTICLES; HYDROGEN; HYDROGEN BONDS; IONS; METAL NANOPARTICLES; NANOSTRUCTURED MATERIALS; PRECIOUS METALS; SCAFFOLDS (BIOLOGY); SURFACE ACTIVE AGENTS; SURFACE PLASMON RESONANCE;

COMPLEMENTARY SEQUENCES; DOUBLE-HELICAL STRUCTURES; FUNDAMENTAL PROPERTIES; NANOPARTICLE CONJUGATE; NANOSTRUCTURE FORMATION; NON-COVALENT INTERACTION; SINGLE-STRANDED (SS) DNA; WATSON-CRICK BASE PAIRING;

NUCLEIC ACIDS;

EID: 79953799731     PISSN: 00018686     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cis.2011.02.007     Document Type: Review

References (173)

1. J. Yguerebide, and E.E.J. Yguerabide Cell Biochem Suppl 37 2001 71
2. A.N. Shipway, E. Katz, and I. Willner Chem Phys Chem 1 2000 19
3. R. Davies, G.A. Schurr, P. Meenan, R.D. Nelson, H.E. Bergna, and C.A.S. Brevett Adv Mater 10 1998 1264
4. C. Mao, T. LaBean, J.H. Reif, and N.C. Seeman Nature 407 2000 493
5. L. Cai, H. Tabata, and T. Kawai Appl Phys Lett 77 2000 3105
6. M. Mertig, L.C. Ciacchi, R. Seidel, W. Pompe, and A.D. Vita Nano Lett 2 2002 841
7. J.M. Kim, T. Ohtani, S. Sugiyama, T. Hirose, and H. Muramatsu Anal Chem 73 2001 5984
8. N.L. Rosi, and C.A. Mirkin Chem Rev 105 2005 1547
9. C. Lin, Y. Liu, S. Rinker, and H. Yan Chem Phys Chem 7 2006 1641
10. F.A. Aldaye, and H.F. Sleiman J Am Chem Soc 129 2007 4130
11. C.A. Mirkin, R.L. Letsinger, R.C. Mucic, and J.J. Storhoff Nature 382 1996 607
12. J. Liu, and Y. Lu Angew Chem Int Ed 45 2006 90
13. D. Miyamoto, Z. Tang, T. Takarada, and M. Maeda Chem Commun 2007 4743
14. D. Bensimon, A.J. Simon, and V.A. Croquette Phys Rev Lett 74 1995 4754
15. E. Prohofsky Statistical mechanics and stability of macromolecules: application to bond disruption, base pair separation, melting, and drug dissociation of the DNA double helix 1995 Cambridge University Press New York NY
16. M. Wilcheck, E.A. Bayer, Meth Enzymol vol. 184 1990 3
17. A. Ulman Chem Rev 96 4 1996 1533
18. R. Sedlák, P. Jurečka, and P. Hobza J Chem Phys 127 2007 075104
19. A. Hesselmann, G. Jansen, and M. Schütz J Am Chem Soc 128 2006 11730
20. D. Philp, and J.F. Stoddart Angew Chem Int Ed Engl 35 1996 1154
21. A. Korostelev, S. Trakhanov, M. Laurberg, and H.F. Noller Cell 126 2006 1065
22. K.D. Westover, D.A. Bushnell, and R.D. Kornberg Cell 119 2004 481
23. T. Sawada, M. Yoshizawa, S. Sato, and M. Fujita Nat Chem 2009 10.1038/nchem.100
24. M. Fujita, M. Tominaga, A. Hori, and B. Therrien Acc Chem Res 38 2005 371
25. M. Yoshizawa, T. Kusukawa, M. Fujita, and K. Yamaguchi J Am Chem Soc 122 2000 6311
26. K. Nakabayashi, M. Kawano, M. Yoshizawa, S. Ohkoshi, and M. Fujita J Am Chem Soc 126 2004 16694
27. M. Yoshizawa, M. Tamura, and M. Fujita Science 312 2006 251
28. K. Kumazawa, K. Biradha, T. Kusukawa, T. Okano, and M. Fujita Angew Chem Int Ed 42 2003 3909
29. K. Hoogsteen Acta Crystallogr 16 1963 907
30. T.N. Thuong, and C. Hélène Angew Chem Int Ed Engl 32 1993 666
31. J. Homola, S.S. Yee, and G. Gauglitz Sens Actuators 1999 B 54;3-15
32. D. Voet, W.B. Gratzer, R.A. Cox, and P. Doty Biopolymers 1 1963 205
33. D. Porschke Biopolymers 1971 1989 10
34. J. Bednar, P. Furrer, V. Katritch, A.Z. Stasiak, J. Dubochet, and A. Stasiak J Mol Biol 254 1995 579
35. N.C. Seeman Nanotechnology 2 1991 149
36. E. Winfree, F. Liu, L. Wenzler, and N.C. Seeman Nature 394 1998 539
37. J. Reedijk Polymer-metal complexes in living systems F. Ciardelli, E. Tsuchida, D. Wöhrle, Macromolecules-metal complexes 1996 Springer Berlin 131 150
38. V.A. Bloomfield Biopolymers 44 1997 269
39. K. Besteman, K. Eijk, and S.G. Lemay Nat Phys 3 2007 641
40. M. Hayat, Colloidal gold: principles, methods and applications 1989 Academic Press San Diego
41. D.L. Feldheim, and C.D. Keating Chem Soc Rev 27 1998 1
42. R.J. Hunter Foundations of colloid science 2004 Oxford University Press New York
43. W.R.J. Glomm J Dispersion Sci Technol 26 2005 389
44. K.L. Kelly, E. Coronado, L.L. Zhao, and G.C. Schatz J Phys Chem B 107 2003 668
45. S. Link, and M.A. El-Sayed Annu Rev Phys Chem 54 2003 331
46. P. Mulvaney Langmuir 12 1996 788
47. P.K. Jain, I.H. El-Sayed, and M.A. El-Sayed Nanotoday 2 2007 19
48. K.H. Su, Q.H. Wei, X. Zhang, J.J. Mock, D.R. Smith, and S. Schultz Nano Lett 3 2003 1087
49. S.A. Maier, M.L. Brongersma, P.G. Kik, S. Meltzer, A.A.G. Requicha, and B.E. Koel Adv Mater 15 2003 562
50. C.F. Bohren, and D.R. Huffman Absorption and scattering of light by small particles 1983 John Wiley & Sons New York
51. P.K. Jain, S. Eustis, and M.A. El-Sayed J Phys Chem B 110 2006 18243
52. T. Liebermann, and W. Knoll Colloids Surf 171 2000 115 130
53. J.M. McDonnell Curr Opin Chem Biol 5 2001 572
54. N.T.K. Thanh, and Z. Rosenzweig Anal Chem 74 2002 1624
55. R.A. Reynolds, C.A. Mirkin, and R.L. Letsinger Pure Appl Chem 72 2000 229
56. P.K. Jain, K.S. Lee, I.H. El-Sayed, and M.A. El-Sayed J Phys Chem B 110 2006 7238
57. H. Du, R.A. Fuh, J. Li, A. Corkan, and J.S. Lindsey Photochem Photobiol 68 1998 141
58. C. Smithpeter, A. Dunn, R. Drezek, T. Collier, and R. Kortum J Biomed Opt 3 1998 429
59. J. Yguerabide, and E.E. Yguerabide Anal Biochem 262 1998 157
60. S. Link, and M.A. El-Sayed J Phys Chem B 103 1999 4212
61. C. Sonnichsen, B.M. Reinhard, and J. Liphardt Nat Biotechnol 23 2005 741
62. K.S. Lee, and M.A. El-Sayed J Phys Chem B 110 2006 19220
63. W.R. Holland, and D.G. Hall Phys Rev B 27 1983 7765
64. D.A. Schultz Curr Opin Biotechnol 14 2003 13
65. P. Englebienne, A.V. Hoonacker, and M. Verhas Analyst 126 2001 1645
66. L. He, M.D. Musick, S.R. Nicewarner, F.G. Salinas, S.J. Benkovic, and M.J. Natan J Am Chem Soc 122 2000 9071
67. M. Zayats, S.P. Pogorelova, A.B. Kharitonov, O. Lioubashevski, E. Katz, and I. Willner Chem Eur J 9 2003 6108
68. J. Liu, and Y. Lu Nat Protoc 1 2006 246
69. J.H. Lee, D.P. Wernette, M.V. Yigit, J. Liu, Z. Wang, and Y. Lu Angew Chem Int Ed 46 2007 9006
70. A.D. Ellington, and J.W. Szostak Nature 346 1990 818
71. H. Li, and L. Rothberg Proc Natl Acad Sci U S A 101 2004 14036
72. A.C. Templeton, J.J. Pietron, R.W. Murray, and P. Mulvaney J Phys Chem B 104 2000 564
73. C.E.D. Chidsey Science 251 1991 919
74. M.M. Alvarez, J.T. Khoury, T.G. Schaaff, M.N. Shafigullin, I. Vezmar, and R.L. Whetten J Phys Chem B 101 1997 3706
75. H. Li, and L.J. Rothberg J Am Chem Soc 126 2004 10958
76. T.A. Taton, G. Lu, and C.A. Mirkin J Am Chem Soc 123 2001 5164
77. Y.W. Cao, R. Jin, and C.A. Mirkin J Am Chem Soc 123 2001 7961
78. U. Kreibig, and L. Genzel Surf Sci 156 1985 678
79. J.R. Lakowicz, M.H. Chowdhury, K. Ray, J. Zhang, Y. Fu, and R. Badugu Proc SPIE 6099 2006 609909
80. K. Urbanska, B. Romanowska-Dixon, and Z. Matuszak Acta Biochim Pol 49 2002 387
81. W.R. Chen, R.L. Adams, R. Carubelli, and R.E. Nordquist Cancer Lett 115 1997 25
82. R. Weissleder Nat Biotechnol 19 2001 316
83. C. Loo, A. Lin, L. Hirsch, M.H. Lee, J. Barton, and N. Halas Technol Cancer Res Treat 3 2004 33
84. X. Huang, I.H. El-Sayed, Qian Wei, and M.A. El-Sayed J Am Chem Soc 128 2006 2115
85. J. Chen, B. Wiley, Z.-Y. Li, D. Campbell, F. Saeki, and H. Cang Adv Mater 17 2005 2255
86. V.P. Zharov, V. Galitovsky, and M. Viegas Nanomedicine 1 2005 326
87. M.L. Brongersma Nat Mater 2 2003 296
88. S. Link, M.B. Mohamed, and M.A. El-Sayed J Phys Chem B 103 1999 3073
89. S. Link, and M.A. El-Sayed J Phys Chem B 109 2005 10531
90. K. Ijiro, and Y. Okahata J Chem Soc Chem Commun 18 1992 1339
91. A.J. Steckl, H. Spaeth, K. Singh, J. Grote, and R. Naik Apply Phys Lett 93 2008 193903
92. A.J. Steckl Nat Photonics 1 2007 3
93. J.O. Radler, I. Koltover, T. Salditt, and C.R. Safinya Science 275 1997 810
94. I. Koltover, T. Salditt, J.O. Radler, and C.R. Safinya Science 281 1998 78
95. J. Shah, Y. Sadhale, and D.M. Chilukuri Adv Drug Deliv Rev 47 2001 229
96. R.R. Balmbra, J.S. Clunie, and J.F. Goodman Nature 222 1969 1159
97. P. Ilekti, P. Martin, B. Cabane, and L. Picullel J Phys Chem 103 1999 9831
98. R. Krishnaswamy, P. Mitra, V.A. Raghunathan, and A.K. Sood Europhys Lett 62 2003 357
99. M.V. Pattarkine, and K.N. Ganesh Biochem Biophys Res Commun 263 1999 41
100. K.N. Ganesh, and M. Sastry J Indian Inst Sci 82 2002 105
101. T. Neumann, S. Gajria, M. Tirrell, and L. Jaeger J Am Chem Soc 131 2009 3440
102. G. Zhang, X. Yan, X. Hou, G. Lu, B. Yang, and L. Wu Langmuir 19 2003 9850
103. H. Sun, W. Li, and L. Wu Langmuir 25 18 2009 10466
104. S. Jiang, and M. Liu Chem Mater 16 2004 3985
105. H. Sun, H. Li, W. Bu, M. Xu, and L. Wu J Phys Chem B 110 2006 24847
106. R.E. Dickerson, H.R. Drew, B.N. Conner, R.M. Wing, A.V. Fratini, and M.L. Kopka Science 216 1982 475
107. K. Luger, A. Mader, R.K. Richmond, D.F. Sargent, and T.J. Richmond Nature 389 1997 251
108. D. McLoughlin, M. Imperor-Clerc, and D. Langevin Chem Phys Chem 5 2004 1619
109. R. Ghirlando, E.J. Wachtel, T. Arad, and A. Minsky Biochemistry 31 1992 7110
110. S.Z. Bathaie, A.A. Moosavi-Movahedi, and A.A. Saboury Nuc Acids Res 27 1999 1001
111. R. Dias, S. Meľnikov, B. Lindman, and M.G. Miguel Langmuir 16 2000 9577
112. J.N. Phillips J Chem Soc FaradayT rans 51 1955 561
113. S.F. Li, W. Dong, Y.W. Zong, W. Yin, G.H. Jin, and Q.G. Hu Mol Ther 15 2007 515
114. G. Minigo, A. Scholzen, C.K. Tang, J.C. Hanley, M. Kalkanidis, and G.A. Pietersz Vaccine 25 2007 1316
115. D.S. Shah, T. Sakthivel, I. Toth, A.T. Florence, and A.D. Wilderspin Int J Pharm 208 2000 41
116. Y. Onishi, Y. Eshita, A. Murashita, M. Mizuno, and J. Yoshida Nanomedicine 3 2007 184
117. M. Hashimoto, M. Morimoto, H. Saimoto, Y. Shigemasa, H. Yanagie, and M. Eriguchi Biotech Lett 28 2006 815
118. P. van de Wetering, N.M.E. Schuurmans- Nieuwenbroek, M.J. van Streenbergen, D.J.A. Crommelin, and W.E. Hennink J Control Rel 64 2000 193
119. P. van de Wetering, J.Y. Cherng, H. Talsma, and W.E. Hennink J Control Rel 49 1997 59
120. J.F. Tan, H.P. Too, T.A. Hatton, and K.C. Tam Langmuir 22 2006 3744
121. U. Rungsardthong, M. Deshpande, L. Bailey, M. Vamvakaki, S.P. Armes, and M.C. Garmett J Control Rel 73 2001 359
122. J.F. Tan, P. Ravi, H.P. Too, T.A. Hatton, and K.C. Tam Biomacromolecules 6 2005 498
123. L. Bromberg, S. Deshmukh, M. Temchenko, L. Iourtchenko, V. Alakhov, and C. Alvarez-Lorenzo Bioconjug Chem 16 2005 626
124. C.K. Nisha, S.V. Manorama, M. Ganguli, S. Maiti, and J.N. Kizhakkedathu Langmuir 20 2004 2386
125. Y.T.A. Chim, J.K.W. Lam, Y. Ma, S.P. Armes, A.L. Lewis, and C.J. Roberts Langmuir 21 2005 3591
126. D.W. Lim, Y.H. Yeom, and T.G. Park Bioconjug Chem 11 2000 688
127. Z.Q. Wu, S. Yang, W.Y. Liao, and L.Z. Meng Chin J Polym Sci 24 2006 315
128. V.P. Torchilin, T.S. Levchenko, and K.R. Whiteman Biomaterials 22 2001 3035
129. Y.H. Liu, X.H. Cao, D.F. Peng, and W.Y. Xu Cent Eur J Chem 7 3 2009 532
130. J.E.G.J. Wijnhoven, and W.L. Vos Science 281 1998 802
131. U.H.F. Bunz Adv Mater 18 2006 973
132. J.F. Kadla, F.H. Asfour, and B. Bar-Nir Biomacromolecules 8 2007 161
133. A. Wu, W. Cheng, Z. Li, J. Jiang, and E. Wang Talanta 68 2006 693
134. A. Wu, Z. Li, and E. Wang Anal Sci 20 2004 1083
135. V. Patil, R.B. Malvankar, and M. Sastry Langmuir 15 1999 8197
136. M. Sastry, A. Kumar, S. Datar, C.V. Dharmadhikari, and K.N. Ganesh Appl Phys Lett 78 2001 2943
137. G. Wang, and R. Murray Nano Lett 4 2004 95
138. M.D. Malinsky, K.L. Kelly, G.C. Schatz, and R.P.V. Duyne J Am Chem Soc 123 2001 1471
139. S.R. Johnson, S.D. Evans, S.W. Mahon, and A. Ulman Langmuir 13 1997 51
140. A. Gole, S.R. Sainkar, and M. Sastry Chem Mater 12 2000 1234
141. A. Kumar, M. Pattarkine, M. Bhadbhade, A.B. Mandale, K.N. Ganesh, and S.S. Datar Adv Mater 13 2001 341
142. M. Yang, H.C.M. Yau, and H.L. Chan Langmuir 14 1998 6121
143. S. Pathak, S.K. Choi, N. Arnheim, and M.E. Thompson J Am Chem Soc 123 2001 4103
144. A.P. Alivisatos, K.P. Johnsson, X. Peng, T.E. Wilson, C.J. Loweth, and M.P. Bruchez Nature 382 1996 609
145. W. Zhao, W. Chiuman, J.C.F. Lam, S.A. McManus, W. Chen, and Y. Cui J Am Chem Soc 130 2008 3610
146. L.M. Demers, C.A. Mirkin, R.C. Mucic, R.A. Reynolds, R.L. Letsinger, and R. Elghanian Anal Chem 72 2000 5535
147. S. Park, K.A. Brown, and K. Hamad-Schifferli Nano Lett 4 2004 1925
148. A.N. Shipway, M. Lahav, R. Blonder, and I. Willner Chem Mater 11 1999 13
149. J. Ye, K. Umemura, M. Ishikawa, and R. Kuroda Anal Biochem 281 2000 21
150. T. Boul-Fadl Curr Med Chem 12 2005 2193
151. R.V. Guntaka, B.R. Varma, and K.T. Weber Int J Biochem Cell Biol 35 2003 22
152. A. Bielinska, R.A. Shivdasani, L.Q. Zhang, and G.J. Nabel Science 250 1990 997
153. H. Ulrich Med Chem 1 2005 199
154. N.C. Seeman Mol Biotechnol 37 2007 246
155. M. Strerath, and A. Marx Angew Chem Int Ed 44 2005 7842
156. A.R. de Fougerolles Hum Gene Ther 19 2008 125
157. V. Borsenberger, and S. Howorka Nucleic Acid Res 37 2009 1477
158. B. Bornemann, S.P. Liu, A. Erbe, E. Scheer, and A. Marx Chemphyschem 9 2008 1241
159. D.R. Corey J Clin Invest 117 2007 3615
160. S.H. Weisbrod, and A. Marx Chem Commun 44 2008 5675
161. A. Fire, S. Xu, M.K. Montgomery, S.A. Kostas, S.E. Driver, and C.C. Mello Nature 391 1998 806
162. S.M. Elbashir, W. Lendeckel, and T. Tuschl Genes Dev 15 2001 188
163. S.M. Hammond, E. Bernstein, D. Beach, and G.J. Hannon Nature 404 2000 293
164. G. De Rosa, and M.I. La Rotonda Molecules 14 2009 2801
165. S.C. Semple, S.K. Klimuk, T.O. Harasym, S.N. Dos, S.M. Ansell, and K.F. Wong Biochim Biophys Acta 1510 2001 152
166. S.Y. Park, A.K.R. Litton-Jean, B. Lee, S. Weigand, G.C. Schatz, and C.A. Mirkin Nature 451 2008 553
167. A. Fu, C.M. Micheel, J. Cha, H. Chang, H. Yang, and A.P. Alivisatos J Am Chem Soc 126 2004 10832
168. S.A. Claridge, H.W. Liang, S.R. Basu, J.M.J. Fréchet, and A.P. Alivisatos Nano Lett 8 2008 1202
169. X. Xu, N.L. Rosi, Y. Wang, F. Huo, and C.A. Mirkin J Am Chem Soc 128 2006 9286
170. K. Suzuki, K. Hosokawa, and M. Maeda J Am Chem Soc 131 2009 7518
171. R.C. Mucic, J.J. Storhoff, C.A. Mirkin, and R.L. Letsinger J Am Chem Soc 120 1998 12674
172. Y. Sun, and C.-H. Kiang DNA-based artificial nanostructures: fabrication, properties, and applications, Chapter VII Nalwa Handbook of nanostructured biomaterials and their applications in nanobiotechnology Vol. 2 2005 American Scientific Publishers 1-58883-033-0 224 246
173. T.A. Taton, R.C. Mucic, C.A. Mirkin, and R.L. Letsinger J Am Chem Soc 122 2000 6305