Bioinformatics database integration based on biomedical ontology

International Journal of Advancements in Computing Technology

Volumn 3, Issue 2, 2011, Pages 66-75

  Qiu, Shuang ^a   Wang, Yadong ^a   Juan, Liran ^a   Teng, Mingxiang ^a   Cheng, Liang ^a  

^a HARBIN INSTITUTE OF TECHNOLOGY   (China)

Author keywords

Bioinformatics; Database integration; Molecular biology databases; NAR

Indexed keywords

BIOINFORMATICS; BIOMOLECULES; BIOPHYSICS; CLASSIFICATION (OF INFORMATION); DISTRIBUTED COMPUTER SYSTEMS; INTEGRATION;

BIOINFORMATICS DATABASE; BIOLOGICAL DATABASE; BIOMEDICAL ONTOLOGIES; DATABASE ANALYSIS; DATABASE COLLECTIONS; DATABASE INTEGRATION; INTEGRATION SYSTEMS; LARGE SCALE DATA;

DATABASE SYSTEMS;

EID: 79953765352     PISSN: 20058039     EISSN: None     Source Type: Journal    
DOI: 10.4156/ijact.vol3.issue2.9     Document Type: Article

References (15)

1. G. Madhu, Keshava Reddy E., Data Mining for Genetics: A Genetic Algorithm Approach, JCIT, Vol. 3, No. 3, pp. 39-45, 2008
2. M. Hemalatha, P. Ranjith Jebah Thangiah, K. Vivekanandan, A Distributed and Parallel Clustering Algorithm for Massive Biological Data, JCIT, Vol. 3, No. 4, pp. 84-88, 2008
3. J. Amberger, C.A. Bocchini, A.F. Scott, A. Hamosh, McKusick's Online Mendelian Inheritance in Man (OMIM), Nucleic Acids Res, vol. 37, Database issue, pp. D793-D796, 2009.
4. E. Wingender, X. Chen, R. Hehl, H. Karas, et al., TRANSFAC: an integrated system for gene expression regulation, Nucleic Acids Res, vol.28, no. 1, pp. 316-319, 2000.
5. S. Griffiths-Jones, R.J. Grocock, S.V. Dongen, A. Bateman, A.J. Enright, Mirbase: microRNA sequences, targets and gene nomenclature, Nucleic Acids Res, vol. 34, Database issue, pp. D140- D144, 2006.
6. M.Y. Galperin, G.R. Cochrane, Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009, Nucleic Acids Res, vol. 37, Database issue, pp. D1-D4, 2009.
7. C. J. Mungall, Obol: integrating language and meaning in bio-ontologies, Comparative and Functional Genomics, Vol. 5, Issue 6-7, pp. 509-520, 2004.
8. Chen Kerui, Zhao Jinchao, Zuo Wanli, He Fengling, Chen Yongheng, Automatic Table Integration by Domain-specific Ontology, JDCTA, Vol. 5, No. 1, pp. 218-225, 2011.
9. Ming Che Lee, Hui Hui Chen, Yu Sheng Li, FCA based Concept Constructing and Similarity Measurement Algorithms, IJACT, Vol. 3, No. 1, pp. 97-105, 2011.
10. Ami T. Choksi, Devesh Jinwala, Improving Semantic Matching of Grid Resources Using Refined Ontology with Complement Class, IJACT, Vol. 2, No. 5, pp. 129-139, 2010.
11. C. Rosse, J.L.V. Mejino, A reference ontology for biomedical informatics: the Foundational Model of Anatomy, Journal of Biomedical Informatics, Vol. 36, Issue 6, pp. 478-500, 2003.
12. P. de Matos, R. Alcántara, A. Dekker, et al., Chemical Entities of Biological Interest: an update, Nucleic Acids Res, vol. 38, Suppl.1, pp. D249-D254, 2010.
13. K. Eilbeck, S. E. Lewis, C. J. Mungall, et al., The Sequence Ontology: a tool for the unification of genome annotations, Genome Biology, Vol. 6, Issue 5, Article R44, 2005.
14. M. Ashburner, C.A. Ball, J.A. Blake, et al. Gene Ontology: tool for the unification of biology, Nature Genetics, Vol. 25, No. 1, pp. 25-29, 2000.
15. J. D. Osborne1, J. Flatow, M. Holko, et al., Annotating the human genome with Disease Ontology, BMC Genomics, Vol. 10, Suppl.1, S6, 2009.