Functional genetics of intraspecific ecological interactions in Arabidopsis thaliana

Philosophical Transactions of the Royal Society B: Biological Sciences

Volumn 366, Issue 1569, 2011, Pages 1358-1367

  Wolf, Jason B ^a   Mutic, Joshua J ^b   Kover, Paula X ^a  

^a University of Bath   (United Kingdom)

^b UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

Competition; Indirect genetic effects; Intraspecific interactions; Pleiotropy; Structural equation models

Indexed keywords

DICOTYLEDON; FLOWERING; GENETIC ANALYSIS; INTRASPECIFIC INTERACTION; LIFE HISTORY TRAIT; NUMERICAL MODEL; PHENOTYPE; PLEIOTROPY; SCANNING ELECTRON MICROSCOPY;

ARABIDOPSIS THALIANA;

EID: 79953750142     PISSN: 09628436     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rstb.2010.0239     Document Type: Article

References (51)

1. Grant, P. R. & Grant, B. R. 2006 Evolution of character displacement in Darwin's finches. Science 313, 224-226 doi:10.1126/science.1128374)
2. Vandeleur, R. K. & Gill, G. S. 2004 The impact of plant breeding on the grain yield and competitive ability of wheat in Australia. Aust. J. Agric. Res. 55, 855-861 (doi:10.1071/AR03136)
3. Ackerly, D. D., Schwilk, D. W. & Webb, C. O. 2006 Niche evolution and adaptive radiation: testing the order of trait divergence. Ecology 87, S50-S61. (doi:10.1890/0012-9658(2006)87[50:NEAART]2.0.CO;2)
4. Andalo, C., Goldringer, I. & Godelle, B. 2001 Inter- and intragenotypic competition under elevated carbon dioxide in Arabidopsis thaliana. Ecology 82, 157-164.
5. Astles, P. A., Moore, A. J. & Preziosi, R. F. 2005 Genetic variation in response to an indirect ecological effect. Proc. R. Soc. B 272, 2577-2581. (doi:10.1098/rspb.2005.3174)
6. Cahill, J. F., Kemel, S. W. & Gustafson, D. J. 2005 Differential genetic influences on competitive effect and response in Arabidopsis thaliana. J. Ecol. 93, 958-967. (doi:10.1111/j.1365-2745.2005.01013.x)
7. Griffing, B. 1989 Genetic analysis of plant mixtures. Genetics 122, 943-956.
8. Mutic, J. J. & Wolf, J. B. 2007 Indirect genetic effects from ecological interactions in Arabidopsis thaliana. Mol. Ecol. 16, 2371-2381.
9. Johnson, M. T. J., Lajeunesse, M. J. & Agrawal, A. A. 2006 Additive and interactive effects of plant genotypic diversity on arthropod communities and plant fitness. Ecol. Lett. 9, 24-34. (doi:10.1111/j.1461-0248.2005.00833.x)
10. Shuster, S. M., Lonsdorf, E., Wimp, G. M., Bailey, J. K. & Whitham, T. G. 2006 Community heritability measures the evolutionary consequences of indirect genetic effects on community structure. Evolution 60, 991-1003. (doi:10.1554/05-121.1)
11. Olofsdotter, M., Jensen, L. B. & Courtois, B. 2002 Improving crop competitive ability using allelopathy: an example from rice. Plant Breed. 121, 1-9. (doi:10.1046/ j.1439-0523.2002.00662.x)
12. Adamson, M. L. & Noble, S. J. 1993 Interspecific and intraspecific competition among pinworms in the hindgut of Periplaneta americana. J. Parasitol. 79, 50-56. doi:10.2307/3283276)
13. Peterson, C. H. 1982 The importance of predation and intra- and interspecific competition in the population biology of two infaunal suspension-feeding bivalves, Protothaca staminea and Chione undatella. Ecol. Monogr. 52, 437-475. (doi:10.2307/2937354)
14. Thornhill, R. 1987 The relative importance of intra- and interspecific competition in scorpionfly mating systems. Am. Nat. 130, 711-729. (doi:10.1086/284740)
15. Meffert, L. M. 1995 Bottleneck effects on genetic variance for courtship repertoire. Genetics 139, 365-374.
16. Petfield, D., Chenoweth, S. F., Rundle, H. & Blows, M. W. 2005 Genetic variance in female condition predicts indirect genetic effects on male display traits. Proc. Natl Acad. Sci. USA 102, 6045-6050. (doi:10.1073/pnas.0409378102)
17. Wilson, M. F. 1994 Sexual selection in plants: perspective and overview. Am. Nat. 144, S13-S39. (doi:10.1086/285651)
18. Ballaré, C. L., Scopel, A. L., Jordan, E. T. & Vierstra, R. D. 1994 Signaling among neighboring plants and the development of size inequalities in plant populations. Proc. Natl Acad. Sci. USA 91, 10 094-10 098. (doi:10.1073/pnas.91.21.10094)
19. Nilsson, C. 1994 Separation of allelopathy and resource competition by the boreal dwarf shrub Empetrum hermaphroditum Hagerup. Oecologia 98, 1-7. (doi:10.1007/BF00326083)
20. Ridenour, W. M. & Callaway, R. M. 2001 The relative importance of allelopathy in interference: the effects of an invasive weed on a native bunchgrass. Oecologia 126, 444-450. (doi:10.1007/s004420000533)
21. Griffing, B. 1967 Selection in reference to biological groups. I. Individual and group selection applied to populations of unordered groups. Aust. J. Biol. Sci. 20, 127-139.
22. Wolf, J. B. & Moore, A. J. 2010 Interacting phenotypes and indirect genetic effects: a genetic perspective on the evolution of social behavior. In Evolutionary behavioral ecology (eds D. F. Westneat & C. W. Fox). New York, NY: Oxford University Press.
23. Moore, A. J., Brodie III, E. D. & Wolf, J. B. 1997 Interacting phenotypes and the evolutionary process. I. Direct and indirect genetic effects of social interactions. Evolution 51, 1352-1362. (doi:10.2307/2411187)
24. Wolf, J. B., Brodie III, E. D., Cheverud, J. M., Moore, A. J. & Wade, M. J. 1998 Evolutionary consequences of indirect genetic effects. Trends Ecol. Evol. 13, 64-69. (doi:10.1016/S0169-5347(97)01233-0)
25. Goldberg, D. E. & Landa, K. 1991 Competitive effect and response: hierarchies and correlated traits in the early stages of competition. J. Ecol. 79, 1013-1030. (doi:10.2307/2261095)
26. Mitchell, R. J. 1992 Testing evolutionary and ecological hypotheses using path analysis and structural equation modelling. Funct. Ecol. 6, 123-129. (doi:10.2307/2389745)
27. Wootton, J. T. 1994 Predicting direct and indirect effects: an integrated approach using experiments and path analysis. Ecology 75, 151-165. (doi:10.2307/1939391)
28. Crespi, B. J. 1990 Measuring the effect of natural selection on phenotypic interaction systems. Am. Nat. 135, 32-47. (doi:10.1086/285030)
29. Crespi, B. J. & Bookstein, F. L. 1989 A path-analytic model for the measurement of selection on morphology. Evolution 43, 18-28. (doi:10.2307/2409161)
30. Geber, M. A. & Griffen, L. R. 2003 Inheritance and natural selection on functional traits. Int. J. Plant Sci. 164, S21-S42. (doi:10.1086/368233)
31. Eaves, L. J., Neale, M. C. & Maes, H. 1996 Multivariate multipoint linkage analysis of quantitative trait loci. Behav. Genet. 26, 519-525. (doi:10.1007/ BF02359757)
32. Stein, C. M., Song, Y., Elston, R. C., Jun, G., Tiwari, H. K. & Iyengar, S. K. 2003 Structural equation model-based genome scan for the metabolic syndrome. BMC Genet. 4, S99. (doi:10.1186/1471-2156-4-S1-S99)
33. Li, R., Tsaih, S.-W., Shockley, K., Stylianou, I. M., Wergedal, J., Paigen, B. & Churchill, G. A. 2006 Structural model analysis of multiple quantitative traits. PLoS Genet. 2, e114. (doi:10.1371/journal.pgen.0020114)
34. Loudet, O., Chaillou, S., Camilleri, C., Bouchez, D. & Daniel-Vedele, F. 2002 Bay-0 × Shahdara recombinant inbred line population: a powerful tool for the genetic dissection of complex traits in Arabidopsis. Theor. Appl. Genet. 104, 1173-1184. (doi:10.1007/s00122-001-0825-9)
35. Leamy, L. J., Routman, E. J. & Cheverud, J. M. 1999 Quantitative trait loci for early- and late-developing skull characters in mice: a test of the genetic independence model of morphological integration. Am. Nat. 153, 201-214. (doi:10.1086/303165)
36. Wolf, J. B., Leamy, L., Routman, E. J. & Cheverud, J. M. 2005 Epistatic pleiotropy and the genetic architecture of covariation within early- and late- developing skull trait complexes in mice. Genetics 171, 683-694. (doi:10.1534/genetics.104.038885)
37. Bollen, K. 1989 Structural equations with latent variables. Wiley Series in Probability and Mathematical Statistics. Chichester, UK: John Wiley & Sons.
38. Loehlin, J. 1992 Latent variable models: an introduction to factor, path and structural analysis, 2nd edn. London, UK: Lawrence Erlbaum Associates.
39. Bozdogan, H. 1987 Model selection and Akaike's information criterion (AIC): the general theory and its analytical extensions. Psychometrika 52, 345-370. (doi:10.1007/BF02294361)
40. Roux, F., Touzet, P., Cuguen, J. & Le Corre, V. 2006 How to be early flowering: an evolutionary perspective. Trends Plant Sci. 11, 375-381. (doi:10.1016/j.tplants.2006.06.006)
41. Korves, T. M., Schmid, K. J., Caicedo, A. L., Mays, C., Stinchcombe, J. R., Purugganan, M. D. & Schmitt, J. 2007 Fitness effects associated with the major flowering time gene FRIGIDA in Arabidopsis thaliana in the field. Am. Nat. 169, E141-E157. (doi:10.1086/513111)
42. Mckay, J. K., Richards, J. H. & Mitchell-Olds, T. 2003 Genetics of drought adaptation in Arabidopsis thaliana. I. Pleiotropy contributes to genetic correlations among ecological traits. Mol. Ecol. 12, 1137-1151. (doi:10.1046/j.1365-294X.2003.01833.x)
43. Scarcelli, N., Cheverud, J. M., Schaal, B. & Kover, P. X. 2007 Antagonistic pleiotropy reduce the potential adaptive value of the FRIGIDA locus. Proc. Natl Acad. Sci. USA 104, 16 986-16 991. (doi:10.1073/pnas.0708209104)
44. Devlin, P. F., Robson, P. R., Patel, S. R., Sharrock, R. A. & Whitelam, G. C. 1999 Phytochrome D acts in the shadeavoidance syndrome in Arabidopsis by controlling elongation growth and flowering time. Plant Physiol. 119, 909-916. (doi:10.1104/pp.119.3.909)
45. Halliday, K. J., Koornneef, M. & Whitelam, G. C. 1994 PhytochromeBandat least one other phytochromemediate the accelerated flowering response of Arabidopsis thaliana L. to low red/far-red ratio. Plant Physiol. 104, 1311-1315.
46. Ballaré, C. L., Scopel, A. L., Jordan, E. T. & Vierstra, R. D. 1994 Signaling among neighboring plants and the development of size inequalities in plant populations. Proc. Natl Acad. Sci. USA 91, 10 094-10 098. (doi:10.1073/pnas.91.21.10094)
47. Martínez-García, J. F., Galstyan, A., Salla-Martret, M., Cifuentes-Esquivel, N., Gallemí, M. & Bou-Torrent, J. 2010 Regulatory components of shade avoidance syndrome. Adv. Bot. Res. 53, 65-116. (doi:10.1016/ s0065-2296(10)53003-9)
48. Callahan, H. S. & Pigliucci, M. 2002 Shade-induced plasticity and its ecological significance in wild populations of Arabidopsis thaliana. Ecology 83, 1965-1980.
49. DeFalco, L. A., Bryla, D. R., Smith-Longozo, V. & Nowak, R. S. 2003 Are Mojave Desert annual species equal? Resource acquisition and allocation for the invasive grass Bromus madritensis subsp. rubens (Poaceae) and two native species. Am. J. Bot. 90, 1045-1053. (doi:10.3732/ajb.90.7.1045)
50. Lynch, J. P. & Ho, M. D. 2005 Rhizoeconomics: carbon costs of phosphorus acquisition. Plant Soil 269, 45-56. (doi:10.1007/s11104-004-1096-4)
51. Reich, P. B., Wright, I. J., Cavender-Bares, J., Craine, J. M., Oleksyn, J., Westoby, M. & Walters, M. B. 2003 The evolution of plant functional variation: traits, spectra, and strategies. Int. J. Plant Sci. 164, 143-164. (doi:10.1086/374368)