-
1
-
-
77953582302
-
Covering a broad dynamic range: information processing at the erythropoietin receptor
-
Becker,V. et al. (2010) Covering a broad dynamic range: information processing at the erythropoietin receptor. Science, 328, 1404-1408.
-
(2010)
Science
, vol.328
, pp. 1404-1408
-
-
Becker, V.1
-
2
-
-
40749162829
-
LibSBML: an API library for SBML
-
Bornstein,B.J. et al. (2008) LibSBML: an API library for SBML. Bioinformatics, 24, 880-881.
-
(2008)
Bioinformatics
, vol.24
, pp. 880-881
-
-
Bornstein, B.J.1
-
3
-
-
0030243005
-
A high-performance, portable implementation of the MPI message passing interface standard
-
Gropp,W. et al. (1996) A high-performance, portable implementation of the MPI message passing interface standard. Parallel Comput., 22, 789-828.
-
(1996)
Parallel Comput.
, vol.22
, pp. 789-828
-
-
Gropp, W.1
-
4
-
-
0001811061
-
ODEPACK, a systematized collection of ODE solvers
-
Stepleman,R.S. et al. (eds), North-Holland, Amsterdam
-
Hindmarsh, A.C. (1983) ODEPACK, a systematized collection of ODE solvers. In Stepleman,R.S. et al. (eds), Scientific Computing. North-Holland, Amsterdam, pp. 55-64.
-
(1983)
Scientific Computing
, pp. 55-64
-
-
Hindmarsh, A.C.1
-
5
-
-
68349101376
-
DOTcvpSB, a software toolbox for dynamic optimization in systems biology
-
Hirmajer,T. et al. (2009) DOTcvpSB, a software toolbox for dynamic optimization in systems biology. BMC Bioinformatics, 10, 199.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 199
-
-
Hirmajer, T.1
-
6
-
-
33845368513
-
COPASI-a COmplex PAthway Simulator
-
Hoops,S. et al. (2006) COPASI-a COmplex PAthway Simulator. Bioinformatics, 22, 3067-3074.
-
(2006)
Bioinformatics
, vol.22
, pp. 3067-3074
-
-
Hoops, S.1
-
7
-
-
0037342537
-
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
-
Hucka,M. et al. (2003) The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics, 19, 524-531.
-
(2003)
Bioinformatics
, vol.19
, pp. 524-531
-
-
Hucka, M.1
-
8
-
-
30344470205
-
libSRES: a C library for stochastic ranking evolution strategy for parameter estimation
-
Ji,X. and Xu,Y. (2006) libSRES: a C library for stochastic ranking evolution strategy for parameter estimation. Bioinformatics, 22, 124-126.
-
(2006)
Bioinformatics
, vol.22
, pp. 124-126
-
-
Ji, X.1
Xu, Y.2
-
9
-
-
77954498298
-
DA 1.0: parameter estimation of biological pathways using data assimilation approach
-
Koh,C.H. et al. (2010) DA 1.0: parameter estimation of biological pathways using data assimilation approach. Bioinformatics, 26, 1794-1796.
-
(2010)
Bioinformatics
, vol.26
, pp. 1794-1796
-
-
Koh, C.H.1
-
10
-
-
51749122228
-
Dynamical modeling and multi-experiment fitting with PottersWheel
-
Maiwald,T. and Timmer,J. (2008) Dynamical modeling and multi-experiment fitting with PottersWheel. Bioinformatics, 24, 2037-2043.
-
(2008)
Bioinformatics
, vol.24
, pp. 2037-2043
-
-
Maiwald, T.1
Timmer, J.2
-
11
-
-
0000169232
-
An algorithm for least-squares estimation of nonlinear parameters
-
Marquardt,D.W. (1963) An algorithm for least-squares estimation of nonlinear parameters. J. Soc. Ind. Appl. Math., 11, 431-441.
-
(1963)
J. Soc. Ind. Appl. Math.
, vol.11
, pp. 431-441
-
-
Marquardt, D.W.1
-
13
-
-
36549012683
-
Estimating parameters and hidden variables in non-linear statespace models based on ODEs for biological networks inference
-
Quach,M. et al. (2007) Estimating parameters and hidden variables in non-linear statespace models based on ODEs for biological networks inference. Bioinformatics, 23, 3209-3216.
-
(2007)
Bioinformatics
, vol.23
, pp. 3209-3216
-
-
Quach, M.1
-
14
-
-
67650760503
-
Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood
-
Raue,A. et al. (2009) Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood. Bioinformatics, 25, 1923-1929.
-
(2009)
Bioinformatics
, vol.25
, pp. 1923-1929
-
-
Raue, A.1
-
15
-
-
0034266683
-
Stochastic ranking for constrained evolutionary optimization
-
Runarsson,T.P. and Yao,X. (2000) Stochastic ranking for constrained evolutionary optimization. IEEE Trans. Evol. Comput., 4, 284-294.
-
(2000)
IEEE Trans. Evol. Comput.
, vol.4
, pp. 284-294
-
-
Runarsson, T.P.1
Yao, X.2
-
16
-
-
33750415038
-
SBML-PET: a Systems Biology Markup Language-based parameter estimation tool
-
Zi,Z. and Klipp,E. (2006) SBML-PET: a Systems Biology Markup Language-based parameter estimation tool. Bioinformatics, 22, 2704-2705.
-
(2006)
Bioinformatics
, vol.22
, pp. 2704-2705
-
-
Zi, Z.1
Klipp, E.2
|