-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W & Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
33745256005
-
Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
-
Anisimova M & Gascuel O (2006) Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Syst Biol 55: 539-552.
-
(2006)
Syst Biol
, vol.55
, pp. 539-552
-
-
Anisimova, M.1
Gascuel, O.2
-
3
-
-
67650239146
-
Technological and flavour potential of cultures isolated from traditional Greek cheeses - a pool of novel species and starters
-
Asteri I-A, Robertson N, Kagkli D-M et al. (2009) Technological and flavour potential of cultures isolated from traditional Greek cheeses - a pool of novel species and starters. Int Dairy J 19: 595-604.
-
(2009)
Int Dairy J
, vol.19
, pp. 595-604
-
-
Asteri, I.-A.1
Robertson, N.2
Kagkli, D.-M.3
-
4
-
-
77954314845
-
Characterization of pLAC1, a cryptic plasmid isolated from Lactobacillus acidipiscis and comparative analysis with its related plasmids
-
Asteri I-A, Papadimitriou K, Boutou E, Anastasiou R, Pot B, Vorgias CE & Tsakalidou E (2010) Characterization of pLAC1, a cryptic plasmid isolated from Lactobacillus acidipiscis and comparative analysis with its related plasmids. Int J Food Microbiol 141: 222-228.
-
(2010)
Int J Food Microbiol
, vol.141
, pp. 222-228
-
-
Asteri, I.-A.1
Papadimitriou, K.2
Boutou, E.3
Anastasiou, R.4
Pot, B.5
Vorgias, C.E.6
Tsakalidou, E.7
-
5
-
-
60849135405
-
Complete genome sequence of Macrococcus caseolyticus strain JCSCS5402, [corrected] reflecting the ancestral genome of the human-pathogenic staphylococci
-
Baba T, Kuwahara-Arai K, Uchiyama I, Takeuchi F, Ito T & Hiramatsu K (2009) Complete genome sequence of Macrococcus caseolyticus strain JCSCS5402, [corrected] reflecting the ancestral genome of the human-pathogenic staphylococci. J Bacteriol 191: 1180-1190.
-
(2009)
J Bacteriol
, vol.191
, pp. 1180-1190
-
-
Baba, T.1
Kuwahara-Arai, K.2
Uchiyama, I.3
Takeuchi, F.4
Ito, T.5
Hiramatsu, K.6
-
6
-
-
0029030087
-
pUCL287 plasmid from Tetragenococcus halophila (Pediococcus halophilus) ATCC 33315 represents a new theta-type replicon family of lactic acid bacteria
-
Benachour A, Frere J & Novel G (1995) pUCL287 plasmid from Tetragenococcus halophila (Pediococcus halophilus) ATCC 33315 represents a new theta-type replicon family of lactic acid bacteria. FEMS Microbiol Lett 128: 167-175.
-
(1995)
FEMS Microbiol Lett
, vol.128
, pp. 167-175
-
-
Benachour, A.1
Frere, J.2
Novel, G.3
-
7
-
-
0030764849
-
Molecular analysis of the replication region of the theta-replicating plasmid pUCL287 from Tetragenococcus (Pediococcus) halophilus ATCC33315
-
Benachour A, Frere J, Flahaut S, Novel G & Auffray Y (1997) Molecular analysis of the replication region of the theta-replicating plasmid pUCL287 from Tetragenococcus (Pediococcus) halophilus ATCC33315. Mol Gen Genet 255: 504-513.
-
(1997)
Mol Gen Genet
, vol.255
, pp. 504-513
-
-
Benachour, A.1
Frere, J.2
Flahaut, S.3
Novel, G.4
Auffray, Y.5
-
8
-
-
0033214628
-
Heuristic approach to deriving models for gene finding
-
Besemer J & Borodovsky M (1999) Heuristic approach to deriving models for gene finding. Nucleic Acids Res 27: 3911-3920.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 3911-3920
-
-
Besemer, J.1
Borodovsky, M.2
-
9
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17: 540-552.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
10
-
-
33244493754
-
Lactobacillus rennini sp. nov., isolated from rennin and associated with cheese spoilage
-
Chenoll E, Macian MC & Aznar R (2006) Lactobacillus rennini sp. nov., isolated from rennin and associated with cheese spoilage. Int J Syst Evol Micr 56: 449-452.
-
(2006)
Int J Syst Evol Micr
, vol.56
, pp. 449-452
-
-
Chenoll, E.1
Macian, M.C.2
Aznar, R.3
-
11
-
-
33750314083
-
TreeDyn: towards dynamic graphics and annotations for analyses of trees
-
Chevenet F, Brun C, Banuls AL, Jacq B & Christen R (2006) TreeDyn: towards dynamic graphics and annotations for analyses of trees. BMC Bioinformatics 7: 439.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 439
-
-
Chevenet, F.1
Brun, C.2
Banuls, A.L.3
Jacq, B.4
Christen, R.5
-
12
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
13
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S & Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
14
-
-
0032849859
-
CAP3: a DNA sequence assembly program
-
Huang X & Madan A (1999) CAP3: a DNA sequence assembly program. Genome Res 9: 868-877.
-
(1999)
Genome Res
, vol.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
15
-
-
36549003965
-
InterPro and InterProScan: tools for protein sequence classification and comparison
-
Mulder N & Apweiler R (2007) InterPro and InterProScan: tools for protein sequence classification and comparison. Method Mol Biol 396: 59-70.
-
(2007)
Method Mol Biol
, vol.396
, pp. 59-70
-
-
Mulder, N.1
Apweiler, R.2
-
16
-
-
33750976398
-
MetaGene: prokaryotic gene finding from environmental genome shotgun sequences
-
Noguchi H, Park J & Takagi T (2006) MetaGene: prokaryotic gene finding from environmental genome shotgun sequences. Nucleic Acids Res 34: 5623-5630.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5623-5630
-
-
Noguchi, H.1
Park, J.2
Takagi, T.3
-
19
-
-
2442677849
-
An accessory protein is required for relaxosome formation by small staphylococcal plasmids
-
Smith MC & Thomas CD (2004) An accessory protein is required for relaxosome formation by small staphylococcal plasmids. J Bacteriol 186: 3363-3373.
-
(2004)
J Bacteriol
, vol.186
, pp. 3363-3373
-
-
Smith, M.C.1
Thomas, C.D.2
-
20
-
-
23944475626
-
Mechanisms of, and barriers to, horizontal gene transfer between bacteria
-
Thomas CM & Nielsen KM (2005) Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat Rev Microbiol 3: 711-721.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 711-721
-
-
Thomas, C.M.1
Nielsen, K.M.2
-
21
-
-
62349136649
-
Assessment of horizontal gene transfer in Lactic acid bacteria-a comparison of mating techniques with a view to optimising conjugation conditions
-
Toomey N, Monaghan A, Fanning S & Bolton DJ (2009) Assessment of horizontal gene transfer in Lactic acid bacteria-a comparison of mating techniques with a view to optimising conjugation conditions. J Microbiol Meth 77: 23-28.
-
(2009)
J Microbiol Meth
, vol.77
, pp. 23-28
-
-
Toomey, N.1
Monaghan, A.2
Fanning, S.3
Bolton, D.J.4
-
22
-
-
0034052595
-
Nucleotide sequence analysis of the lactococcal EPS plasmid pNZ4000
-
van Kranenburg R, Kleerebezem M & de Vos WM (2000) Nucleotide sequence analysis of the lactococcal EPS plasmid pNZ4000. Plasmid 43: 130-136.
-
(2000)
Plasmid
, vol.43
, pp. 130-136
-
-
van Kranenburg, R.1
Kleerebezem, M.2
de Vos, W.M.3
-
23
-
-
66849095469
-
Characterization of four plasmids harboured in a Lactobacillus brevis strain encoding a novel bacteriocin, brevicin 925A, and construction of a shuttle vector for lactic acid bacteria and Escherichia coli
-
Wada T, Noda M, Kashiwabara F et al. (2009) Characterization of four plasmids harboured in a Lactobacillus brevis strain encoding a novel bacteriocin, brevicin 925A, and construction of a shuttle vector for lactic acid bacteria and Escherichia coli. Microbiology 155: 1726-1737.
-
(2009)
Microbiology
, vol.155
, pp. 1726-1737
-
-
Wada, T.1
Noda, M.2
Kashiwabara, F.3
-
24
-
-
65449188232
-
Jalview Version 2 - a multiple sequence alignment editor and analysis workbench
-
Waterhouse AM, Procter JB, Martin DM, Clamp M & Barton GJ (2009) Jalview Version 2 - a multiple sequence alignment editor and analysis workbench. Bioinformatics 25: 1189-1191.
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.3
Clamp, M.4
Barton, G.J.5
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