Mitochondrial COI gene transfers to the nuclear genome of Dendroctonus valens and its implications

Journal of Applied Entomology

Volumn 135, Issue 4, 2011, Pages 302-310

  Cai, Y ^a   Cheng, X Y ^a   Duan, D ^b   Xu, R ^a  

^a BEIJING NORMAL UNIVERSITY   (China)

^b Forestry Research Institute of Shanxi Province   (China)

Author keywords

Dendroctonus valens; MtDNA COI; NUMT; Pseudogene; Red turpentine beetle

Indexed keywords

BEETLE; ENZYME ACTIVITY; EVOLUTIONARY BIOLOGY; GENE TRANSFER; GENETIC ANALYSIS; GENOMICS; INVASIVE SPECIES; MITOCHONDRIAL DNA; PHYLOGENETICS; POLYMERASE CHAIN REACTION; POPULATION GENETICS;

CHINA;

COLEOPTERA; DENDROCTONUS VALENS;

EID: 79953299303     PISSN: 09312048     EISSN: 14390418     Source Type: Journal    
DOI: 10.1111/j.1439-0418.2010.01545.x     Document Type: Article

References (33)

1. Afonso JM, Pestano J, Hernández M, 1988. Rapid isolation of mitochondrial DNA from Drosophila adults. Biochem. Genet. 26, 381-386.
2. Avise JC, Arnold J, Ball RM, Bermingham E, Lamb T, Neigel JE, Reeb CA, Saunders NC, 1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Ann. Rev. Ecol. Syst. 18, 489-522.
3. Behura SK, 2006. Molecular marker systems in insects: current trends and future avenues. Mol. Ecol. 15, 3087-3113.
4. Behura SK, 2007. Analysis of nuclear copies of mitochondrial sequences in honeybee (Apis mellifera) genome. Mol. Biol. Evol. 24, 1492-1505.
5. Bensasson D, Zhang D-X, Hewitt GM, 2000. Frequent assimilation of mitochondrial DNA by grasshopper nuclear Genomes. Mol. Biol. Evol. 17, 406-415.
6. Bensasson D, Zhang D-X, Hartl DL, Hewitt GM, 2001a. Mitochondrial pseudogenes: evolution's misplaced witnesses. Trends Ecol. Evol. 16, 314-321.
7. Bensasson D, Petrov DA, Zhang D-X, Hartl DL, Hewitt GM, 2001b. Genomic gigantism: DNA loss is slow in mountain grasshopper. Mol. Biol. Evol. 18, 246-253.
8. Caccone A, Amato GD, Powell JR, 1988. Rates and patterns of scnDNA and mtDNA divergence within the Drosophila melanogaster subgroup. Genetics 118, 671-683.
9. Cai Y-W, Cheng X-Y, Xu R-M, Duan D-H, Kirkendall LR, 2008. Genetic diversity and biogeography of the red turpentine beetle (Dendroctonus valens LeConte) in its native and invasive regions. Insect Sci. 15, 291-301.
10. Cognato AI, Sun JH, Anducho-Reyes MA, Owen DR, 2005. Genetic variation and origin of the red turpentine beetle (Dendroctonus valens LeConte) introduced to the People's Republic of China. Agr. Forest Entomol. 7, 87-94.
11. Collura RV, Stewart C-B, 1995. Insertions and duplications of mtDNA in the nuclear genomesof old world monkeys and hominoids. Nature 378, 485-489.
12. Frey JE, Frey B, 2004. Origin of intra-individual variation in PCR-amplified mitochondrial cytochrome oxidase I of Thrips tabaci (Thysanoptera: Thripidae): mitochondrial hereroplasmy or nuclear integration? Hereditas 140, 92-98.
13. Fukuda M, Wakasugi S, Tsuzuki T, Nomiyama H, Shimada K, 1985. Mitochondrial DNA-like sequences in the human nuclear genome. Characterization and implications in the evolution of mitochondrial DNA. J. Mol. Biol. 186, 257-266.
14. Gellisen G, Bradfield JY, White BN, Wyatt GR, 1983. Mitochondrial DNA sequence in the nuclear genome of a locust. Nature 301, 631-634.
15. Gyllensten U, 1989. Direct sequencing of in vitro amplified DNA. In: PCR technology: principles and applications of for DNA amplification. Ed. By Erlich HA, Stockton Press, London, 45-60.
16. Jordal BH, Hewitt GM, 2004. The origin and radiation of Macaronesian beetle breeding in Euphorbia: the relative importance of Multiple data partitions and population sampling. Systematic Biol. 53, 711-734.
17. Keller I, Bensasson D, Nichols RA, 2007. Transition-transversion bias is not universal: A counter example from grasshopper pseudogenes. PLoS Genet. 3, e22. doi:.
18. Kelly ST, Farrell BD, 1998. Is specialization a dead end? The phylogeny of host use in Dendroctonus Bark Beetles (Scolytidae) Evolution 52, 1731-7343.
19. Koutroumpa FA, Lieutier F, Roux-Morabito G, 2009. Incorporation of mitochondrial fragments in the nuclear genome (NUMTs) of the longhorned beetle Monochamus galloprovincialis (Coleoptera, Cerambycidae). J. Zool. Syst. Evol. Res. 47, 141-148.
20. Kumar S, Tamura K, Nei M, 2004. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform. 5, 150-163.
21. Pamilo P, Viljakainen L, Vihavainen A, 2007. Exceptionally high density of NUMTs in the honeybee genome. Mol. Biol. Evol. 24, 1340-1346.
22. Pons J, Vogler AP, 2005. Complex pattern of coalescence and fast evolution of a mitochondrial rRNA pseudogene in a recent radiation of tiger beetles. Mol. Biol. Evol. 22, 991-1000.
23. Richly E, Leister D, 2004. NUMTs in sequenced eukaryotic genomes. Mol. Biol. Evol. 21, 1081-1084.
24. Simon C, Frati F, Beckenbach A, Crespi B, Liu H, Flook P, 1994. Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann. Entomol. Soc. Am. 87, 651-701.
25. Sorenson MD, Fleischer RC, 1996. Multiple independent transpositions of mitochondrial DNA control region sequences to the nucleus. Proc. Natl Acad. Sci. USA 93, 15239-15243.
26. Sorenson MD, Quinn TW, 1998. NUMTs: A challenge for avian systematics and population biology. Auk 115, 214-221.
27. Sunnucks P, Hales DF, 1996. Numerous transposed sequences of mitochondrial cytochrome oxidase I-II in aphids of the genus Sitobion (Hemiptera: Aphididae). Mol. Biol. Evol. 13, 510-524.
28. Sword GA, Senior LB, Gaskin JF, Joern A, 2007. Double trouble for grasshopper molecular systematics: intra-individual heterogeneity of both mitochondrial 12S-valine-16S and nuclear internal transcribed spacer ribosomal DNA sequences in Hesperotettix viridis (Orthoptera: Acrididae). Syst. Entomol. 32, 420-428.
29. Thalmann O, Hebler J, Poinar HN, Pääbo S, Vigilant L, 2004. Unreliable mtDNA data due to nuclear insertions: a cautionary tale from analysis of humans and other great apes. Mol. Ecol. 13, 321-335.
30. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24, 4876-4882.
31. Triant DA, DeWoody JA, 2007. Extensive mitochondrial DNA transfer in a rapidly evolving rodent has been mediated by independent insertion events and by duplications. Gene 401, 61-70.
32. Vaughan HE, Heslop-Harrison JS, Hewitt GM, 1999. The localization of mitochondrial sequences to chromosomal DNA in orthopterans. Genome 42, 874-880.
33. Zhang D-X, Hewitt GM, 1996. Nuclear integrations: challenges for mitochondrial DNA markers. Trends Ecol. Evol. 11, 247-251.