A mass spectrometry primer for mass spectrometry imaging

Methods in Molecular Biology

Volumn 656, Issue , 2010, Pages 21-49

  Rubakhin, Stanislav S ^a   Sweedler, Jonathan V ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

detector; ion source; mass analyzer; mass spectrometer; Mass spectrometry imaging; mass spectrum

Indexed keywords

ARTICLE; DIAGNOSTIC IMAGING; ELECTROSPRAY MASS SPECTROMETRY; MASS SPECTROMETRY; METHODOLOGY; THEORETICAL MODEL;

DIAGNOSTIC IMAGING; MASS SPECTROMETRY; MODELS, THEORETICAL; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION;

EID: 79953272976     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-60761-746-4_2     Document Type: Article

References (44)

1. Burlingame, A. L. (2005) Mass spectrometry: Modified proteins and glycoconjugates, Methods in Enzymolology. Elsevier Academic Press, Amsterdam, Boston, MA.
2. Chance, M. (ed.) (2008) Mass Spectrometry Analysis for Protein-Protein Interactions and Dynamics. John Wiley & Sons, Hoboken, NJ.
3. Downard, K. (ed.) (2007) Mass Spectrometry of Protein Interactions.Wiley Interscience, Hoboken, NJ.
4. Lipton, M. S., Páya-Tolic, L. (2009) Mass Spectrometry of Proteins and Peptides: Methods and Protocols. Humana Press, Springer, distributor, New York, NY, London.
5. Matthiesen, R. (ed.) (2007) Mass Spectrometry Data Analysis in Proteomics. Humana Press, Totowa, NJ.
6. Murphy, R. C. (1993) Mass Spectrometry of Lipids. Plenum Press, New York, NY.
7. Sparkman, O. D. (2006) Mass Spec Desk Reference. 2nd ed. Global View Publishing, Pittsburgh, PA.
8. Wanner, K. T., Höfner, G. (eds.) (2007) Applications in Drug Discovery. Wiley- VCH, John Wiley (distributor), Weinheim, Chichester.
9. McLafferty, F. W., Turecek, F. (1993) Interpretation of Mass Spectra. University Science Books, Mill Valley, CA.
10. Becker, J. S. (2007) Inorganic Mass Spectrometry: Principles and Applications. John Wiley & Sons, Chichester, Englandm Hoboken, NJ.
11. De Podesta, M. (2001) Understanding the Properties of Matter. Taylor & Francis, London, New York, NY.
12. Holscher, D., Shroff, R., Knop, K., Gottschaldt, M., Crecelius, A., Schneider, B., Heckel, D. G., Schubert, U. S., Svatos, A. (2009) Matrix-free UV-laser desorption/ ionization (LDI) mass spectrometric imaging on the single-cell level: Distribution of secondary metabolites of Arabidopsis thaliana and Hypericum species. Plant J, 60, 907-918.
13. Liu, Q., Guo, Z., He, L. (2007) Mass spectrometry imaging of small molecules using desorption/ionization on silicon. Anal Chem, 79, 3535-3541.
14. Van Berkel, G. J., Kertesz, V., Koeplinger, K. A., Vavrek, M., Kong, A. N. (2008) Liquid microjunction surface sampling probe electrospray mass spectrometry for detection of drugs and metabolites in thin tissue sections. J Mass Spectrom, 43, 500-508.
15. Northen, T. R., Yanes, O., Northen, M. T., Marrinucci, D., Uritboonthai, W., Apon, J., Golledge, S. L., Nordstrom, A., Siuzdak, G. (2007) Clathrate nanostructures for mass spectrometry. Nature, 449, 1033-1036.
16. Yanes, O., Woo, H. K., Northen, T. R., Oppenheimer, S. R., Shriver, L., Apon, J., Estrada, M. N., Potchoiba, M. J., Steenwyk, R., Manchester, M., Siuzdak, G. (2009) Nanostructure initiator mass spectrometry: Tissue imaging and direct biofluid analysis. Anal Chem, 81, 2969-2975.
17. Willingham, D., Kucher, A., Winograd, N. (2008) Molecular depth profiling and imaging using cluster ion beams with femtosecond laser postionization. Appl Surf Sci, 255, 831-833.
18. Sakamoto, T., Koizumi, M., Kawasaki, J., Yamaguchi, J. (2008) Development of a high lateral resolution TOF-SIMS apparatus for single particle analysis. Appl Surf Sci, 255, 1617-1620.
19. Wucher, A., Cheng, J., Zheng, L., Winograd, N. (2009) Three-dimensional depth profiling of molecular structures. Anal Bioanal Chem, 393, 1835-1842.
20. Tanaka, K. (2003) The origin of macromolecule ionization by laser irradiation (Nobel lecture). Angew Chem Int Ed Engl, 42, 3860-3870.
21. Hillenkamp, F., Karas, M. (1990) Mass spectrometry of peptides and proteins by matrix-assisted ultraviolet laser desorption/ ionization. Methods Enzymol, 193, 280-295.
22. Fenn, J. (2002) Electrospray ionization mass spectrometry: How it all began. J Biomol Tech, 13, 101-118.
23. Cornett, D. S., Reyzer, M. L., Chaurand, P., Caprioli, R. M. (2007) MALDI imaging mass spectrometry: Molecular snapshots of biochemical systems. Nat Methods, 4, 828-833.
24. Kaletas, B. K., van der Wiel, I. M., Stauber, J., Guzel, C., Kros, J. M., Luider, T. M., Heeren, R. M. (2009) Sample preparation issues for tissue imaging by imaging MS. Proteomics, 9, 2622-2633.
25. Seetharaman, V., Royston, G. (2007) Quantitative detection of metabolites using matrixassisted laser desorption/ionization mass spectrometry with 9-aminoacridine as the matrix. Rapid Commun Mass Spectrom, 21, 2072-2078.
26. Rachal, L. V.-S., David, M. H. (2002) 9-Aminoacridine as a matrix for negative mode matrix-assisted laser desorption/ ionization. Rapid Commun Mass Spectrom, 16, 1575-1581.
27. Edwards, J. L., Kennedy, R. T. (2005) Metabolomic analysis of eukaryotic tissue and prokaryotes using negative mode MALDI time-of-flight mass spectrometry. Anal Chem, 77, 2201-2209.
28. Liu, Y., Sun, X., Guo, B. (2003) Matrixassisted laser desorption/ionization timeof- flight analysis of low-concentration oligonucleotides and mini-sequencing products. Rapid Commun Mass Spectrom, 17, 2354-2360.
29. Romanova, E. V., Rubakhin, S. S., Sweedler, J. V. (2008) One-step sampling, extraction, and storage protocol for peptidomics using dihydroxybenzoic acid. Anal Chem, 80, 3379-3386.
30. Takats, Z., Wiseman, J. M., Gologan, B., Cooks, R. G. (2004) Mass spectrometry sampling under ambient conditions with desorption electrospray ionization. Science, 306, 471-473.
31. Manicke, N. E., Wiseman, J. M., Ifa, D. R., Cooks, R. G. (2008) Desorption electrospray ionization (DESI) mass spectrometry and tandem mass spectrometry (MS/MS) of phospholipids and sphingolipids: Ionization, adduct formation, and fragmentation. J Am Soc Mass Spectrom, 19, 531-543.
32. Wiseman, J. M., Ifa, D. R., Venter, A., Cooks, R. G. (2008) Ambient molecular imaging by desorption electrospray ionization mass spectrometry. Nat Protoc, 3, 517-524.
33. Lundstrom, S. L., D'Alexandri, F. L., Nithipatikom, K., Haeggstrom, J. Z., Wheelock, A. M., Wheelock, C. E. (2009) HPLC/MS/MS-based approaches for detection and quantification of eicosanoids. Methods Mol Biol, 579, 161-187.
34. Houjou, T., Yamatani, K., Nakanishi, H., Imagawa, M., Shimizu, T., Taguchi, R. (2004) Rapid and selective identification of molecular species in phosphatidylcholine and sphingomyelin by conditional neutral loss scanning and MS3. Rapid Commun Mass Spectrom, 18, 3123-3130.
35. Iavarone, A. T., Jurchen, J. C., Williams, E. R. (2001) Supercharged protein and peptide ions formed by electrospray ionization. Anal Chem, 73, 1455-1460.
36. Shi, S. D., Hendrickson, C. L., Marshall, A. G. (1998) Counting individual sulfur atoms in a protein by ultrahighresolution Fourier transform ion cyclotron resonance mass spectrometry: Experimental resolution of isotopic fine structure in proteins. Proc Natl Acad Sci U S A, 95, 11532-11537.
37. Shi, S. D. H., Drader, J. J., Hendrickson, C. L., Marshall, A. G. (1999) Fourier transform ion cyclotron resonance mass spectrometry in a high homogeneity 25 tesla resistive magnet. J Am Soc Mass Spectrom, 10, 265-268.
38. Schaub, T. M., Hendrickson, C. L., Horning, S., Quinn, J. P., Senko, M. W., Marshall, A. G. (2008) High-performance mass spectrometry: Fourier transform ion cyclotron resonance at 14.5 tesla. Anal Chem, 80, 3985-3990.
39. Makarov, A., Denisov, E., Kholomeev, A., Balschun, W., Lange, O., Strupat, K., Horning, S. (2006) Performance evaluation of a hybrid linear ion trap/orbitrap mass spectrometer. Anal Chem, 78, 2113-2120.
40. Jardin-Mathe, O., Bonnel, D., Franck, J., Wisztorski, M., Macagno, E., Fournier, I., Salzet, M. (2008) MITICS (MALDI Imaging Team Imaging Computing System): A new open source mass spectrometry imaging software. J Proteomics, 71, 332-345.
41. Broersen, A., van Liere, R., Altelaar, A. F., Heeren, R. M., McDonnell, L. A. (2008) Automated, feature-based image alignment for high-resolution imaging mass spectrometry of large biological samples. J Am Soc Mass Spectrom, 19, 823-832.
42. Hjerno, K., Hojrup, P. (2007) Calibration of matrix-assisted laser desorption/ionization time-of-flight peptide mass fingerprinting spectra. Methods Mol Biol, 367, 49-60.
43. Luo, Q., Nieves, E., Kzhyshkowska, J., Angeletti, R. H. (2006) Endogenous transforming growth factor-beta receptormediated Smad signaling complexes analyzed by mass spectrometry. Mol Cell Proteomics, 5, 1245-1260.
44. Wolski, W. E., Farrow, M., Emde, A. K., Lehrach, H., Lalowski, M., Reinert, K. (2006) Analytical model of peptide mass cluster centres with applications. Proteome Sci, 4, 18.