Endonucleases

Current Protocols in Molecular Biology

Volumn , Issue SUPPL.93, 2011, Pages

  Nichols, Nicole M ^a  

^a NEW ENGLAND BIOLABS   (United States)

Author keywords

DNA fragmentation; DNase I; Micrococcal nuclease; MNase; Mung bean nuclease; Next generation DNA sequencing

Indexed keywords

BAL 31 PROTEIN; DEOXYRIBONUCLEASE I; ENDONUCLEASE; ESTERASE; MICROCOCCAL NUCLEASE; NUCLEASE S1; UNCLASSIFIED DRUG; BAL 31 NUCLEASE; MUNG BEAN NUCLEASE;

ARTICLE; DNA FRAGMENTATION; DNA REPAIR; DOUBLE STRANDED DNA BREAK; ENZYME ACTIVITY; ENZYME MECHANISM; MUNG BEAN; PRIORITY JOURNAL; PROTEIN FUNCTION; CHROMATIN FRAGMENTATION; CHROMATIN STRUCTURE; DNA DAMAGE; DNA NICK TRANSLATION; DNA STRUCTURE; INTRON; MOLECULAR CLONING; MUTAGENESIS; PRECIPITATION; PROTEIN SECONDARY STRUCTURE; RNA TRANSCRIPTION;

VIGNA RADIATA VAR. RADIATA;

EID: 79953272019     PISSN: 19343639     EISSN: 19343647     Source Type: Journal    
DOI: 10.1002/0471142727.mb0312s93     Document Type: Article

References (16)

1. Alexander, M., Heppel, L.A., and Hurwitz, J. 1961. The purification and properties of micrococcal nuclease. J. Biol. Chem. 236:3014-3019.
2. Anderson, S. 1981. Shotgun DNA sequencing using cloned DNase I-generated fragments. Nucleic Acids Res. 9:3015-3027.
3. Campbell, V.W. and Jackson, D.A. 1980. The effect of divalent cations on the mode of action of DNase I. The initial reaction products produced from covalently closed circular DNA. J. Biol. Chem. 255:3726-3735.
4. Gray, H.B., Ostrander, D.A., Hodnett, J.L., Legerski, R.J., and Robberson, D.L. 1975. Extracellular nucleases of Pseudomonas Bal 31. I. Characterization of single strand-specific deoxyriboendonuclease and doublestrand deoxyriboexonuclease activites. Nucleic Acids Res. 2:1459-1492.
5. Gray, H.B., Winston, T.P., Hodnett, J.L., Legerski, R.J., Nees, D.W., Wei, C.-F., and Robberson, D.L. 1981. The extracellular nuclease from Alteromonas espejiana: An enzyme highly specific for nonduplex structure in nominally duplex DNAs. In Gene Amplification and Analysis, Vol. 2: Structural Analysis of Nucleic Acids (J.G. Chirikjian and T.S. Papas, eds.) pp. 169-203. Elsevier/North Holland, New York.
6. Harismendy, O. and Frazer, K.A. 2009. Method for improving sequence coverage uniformity of targeted genomic intervals amplified by LR-PCR using Illumina GA sequencing-by-synthesis technology. BioTechniques 46:229-231.
7. Kornberg, R.D. 1977. Structure of chromatin. Ann. Rev. Biochem. 46:931-954.
8. Kroeker, W.D., Kowalski, D., and Laskowski, M. 1976. Mung bean nuclease I. Terminally directed hydrolysis of native DNA. Biochemistry 15:4463-4467.
9. Lau, P.P. and Gray, H.B. 1979. Extracellular nucleases of Alteromonas espejiana Bal 31. IV. The single strand-specific deoxyriboendonuclease activity as a probe for regions of staltered secondary structure in negatively and positively supercoiled closed circular DNA. Nucleic Acids Res. 6:331-357.
10. Legerski, R.J., Gray, H.B., and Robberson, D.L. 1977. A sensitive endonuclease probe for lesions in DNA helix structure produced by carcinogenic or mutagenic agents. J. Biol. Chem. 252:8740-8746.
11. Legerski, R.J., Hodnett, J.L., and Gray, H.B. 1978. Extracellular nucleases of Pseudomonas Bal 31. III. Use of the double-strand deoxyriboexonuclease activity as a basis of a convenient method for the mapping of fragments of DNA produced by cleavage with restriction enzymes. Nucleic Acids Res. 5:1445-1464.
12. Moore, S. 1981. Pancreatic DNase. In The Enzymes, Vol. 14A (P.D. Boyer, ed.) pp. 281-298. Academic Press, San Diego, California.
13. O'Neill, L.P. and Turner, B.M. 2003. Immunoprecipitation of native chromatin: NChIP. Methods 31:76-82.
14. Pelham, H.R.B. and Jackson, R.J. 1976. An efficient mRNA-dependent translation system from reticulocyte lysates. Eur. J. Biochem. 67:247-256.
15. Vogt, V.M. 1980. Purification and properties of S1 nuclease from Aspergillus. Methods Enzymol. 65:248-254.
16. Wei, C.-F., Alianell, G.A., Bencen, G.H., and Gray, H.B. 1983. Isolation and comparison of two molecular species of the Bal 31 nuclease from Alteromonas espejiana with distinct kinetic properties. J. Biol. Chem. 258:13506-13512.