Efficient, global-scale quantification of absolute protein amounts by integration of targeted mass spectrometry and two-dimensional gel-based proteomics

Analytical Chemistry

Volumn 83, Issue 7, 2011, Pages 2677-2684

  Maass, Sandra ^a   Sievers, Susanne ^a   Zühlke, Daniela ^a   Kuzinski, Judith ^a,b   Sappa, Praveen K ^a   Muntel, Jan ^a   Hessling, Bernd ^a   Bernhardt, Jörg ^a   Sietmann, Rabea ^a   Völker, Uwe ^a   Hecker, Michael ^a   Becher, Dörte ^a  

^a UNIVERSITY OF GREIFSWALD   (Germany)

^b LEIBNIZ INSTITUTE FOR FARM ANIMAL BIOLOGY FBN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ABSOLUTE QUANTIFICATION; BACILLUS SUBTILIS; BIOLOGICAL PROCESS; CELL TYPES; DATA SETS; GLOBAL SCALE; INTERNAL STANDARDS; INTRACELLULAR PROTEINS; ISOTOPICALLY LABELED; METABOLIC ENZYMES; NEW STRATEGY; PRE-SELECTED; PROOF OF PRINCIPLES; PROTEIN CONCENTRATIONS; PROTEOMICS; QUANTITATIVE APPROACH; SPECTROMETRIC METHODS; STAPHYLOCOCCUS AUREUS; SYSTEMS BIOLOGY;

BACTERIOLOGY; CONCENTRATION (PROCESS); GELS; GLUCOSE; MASS SPECTROMETRY; METABOLISM; MOLECULAR BIOLOGY; TWO DIMENSIONAL;

PROTEINS;

BACTERIAL PROTEIN; PROTEIN;

ANIMAL; ARTICLE; BACILLUS SUBTILIS; CATTLE; CYTOLOGY; HUMAN; ISOLATION AND PURIFICATION; MASS SPECTROMETRY; METABOLISM; METHODOLOGY; PROTEOMICS; STAPHYLOCOCCUS AUREUS; SYSTEM ANALYSIS; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ANIMALS; BACILLUS SUBTILIS; BACTERIAL PROTEINS; CATTLE; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; HUMANS; MASS SPECTROMETRY; PROTEINS; PROTEOMICS; STAPHYLOCOCCUS AUREUS; SYSTEMS INTEGRATION;

EID: 79953271667     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac1031836     Document Type: Article

References (24)

1. Aebersold, R. Mol. Syst. Biol. 2005, 1, 2005.0005
2. Souchelnytskyi, S. Proteomics Clin. Appl. 2005, 5, 4123-4137
3. Malmström, J.; Lee, H.; Aebersold, R. Curr. Opin. Biotechnol. 2007, 18, 378-384
4. Pan, S.; Aebersold, R.; Chen, R.; Rush, J.; Goodlett, D. R.; McIntosh, M. W.; Zhang, J.; Brentnall, T. A. J. Proteome Res. 2009, 8, 787-797
5. Gerber, S. A.; Rush, J.; Stemman, O.; Kirschner, M. W.; Gygi, S. P. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 6940-6945
6. Lange, V.; Malmström, J. A.; Didion, J.; King, N. L.; Johansson, B. P.; Schäfer, J.; Rameseder, J.; Wong, C. H.; Deutsch, E. W.; Brusniak, M. Y.; Bühlmann, P.; Björck, L.; Domon, B.; Aebersold, R. Mol. Cell. Proteomics 2008, 7, 1489-1500
7. Ishihama, Y.; Schmidt, T.; Rappsilber, J.; Mann, M.; Hartl, F. U.; Kerner, M. J.; Frishman, D. BMC Genomics 2008, 9, 102-119
8. Silva, J. C.; Gorenstein, M. V.; Li, G.; Vissers, J. P. C.; Geromanos, S. J. Mol. Cell. Proteomics 2006, 5, 144-156
9. Lu, P.; Vogel, C.; Wang, R.; Yao, X.; Marcotte, E. M. Nat. Biotechnol. 2007, 25, 117-124
10. Malmström, J.; Beck, M.; Schmidt, A.; Lange, V.; Deutsch, E. W.; Aebersold, R. Nature 2009, 460, 762-765
11. Ghaemmaghami, S.; Huh, W. K.; Bower, K.; Howson, R. W.; Belle, A.; Dephoure, N.; O'Shea, E. K.; Weissmann, J. S. Nature 2003, 425, 737-741
12. Büttner, K.; Bernhardt, J.; Scharf, C.; Schmid, R.; Mäder, U.; Eymann, C.; Antelmann, H.; Völker, A.; Völker, U.; Hecker, M. Electrophoresis 2001, 22, 2908-2935
13. Abramoff, M. D.; Magelhaes, P. J.; Ram, S. J. Biophotonics Int. 2004, 11, 36-42
14. Mayya, V.; Rezual, K.; Wu, L.; Fong, M. B.; Han, D. K. Mol. Cell. Proteomics 2006, 5, 1146-1157
15. Gerth, U.; Kirstein, J.; Mostertz, J.; Waldminghaus, T.; Miethke, M.; Kock, H.; Hecker, M. J. Biotechnol. 2004, 186, 179-191
16. Bernhardt, J.; Weibezahn, J.; Scharf, C.; Hecker, M. Genome Res. 2003, 13, 224-237
17. Kohler, C.; Wolff, S.; Albrecht, D.; Fuchs, S.; Becher, D.; Büttner, K.; Engelmann, S.; Hecker, M. Int. J. Med. Microbiol. 2005, 295, 547-565
18. Pettit, F. H.; Hamilton, L.; Munk, P.; Namihira, G.; Eley, M. H.; Willms, C. R.; Reed, L. J. J. Biol. Chem. 1973, 248, 2582-2590
19. Neveling, U.; Bringer-Meyer, S.; Sahm, H. Biochim. Biophys. Acta 1998, 1385, 367-372
20. Hardy, S. J. S. Mol. Gen. Genet. 1975, 140, 253-274
21. Tal, M.; Weissman, I.; Silberstein, A. J. Biochem. Biophys. Methods 1990, 21, 247-266
22. Hecker, M.; Antelmann, H.; Büttner, K.; Bernhardt, J. Proteomics 2008, 8, 4958-4975
23. Newman, J. R. S.; Ghaemmaghami, S.; Ihmels, J.; Breslow, D. K.; Noble, M.; DeRisi, J. L.; Weissmann, J. S. Nature 2006, 441, 840-846
24. Masuda, T.; Saito, N.; Tomita, M.; Ishihama, Y. Mol. Cell. Proteomics 2009, 8, 2770-2777