Comparison of constitutional and replication stress-induced genome structural variation by SNP array and mate-pair sequencing

Genetics

Volumn 187, Issue 3, 2011, Pages 675-683

  Arlt, Martin F ^a   Ozdemir, Alev Cagla ^a   Birkeland, Shanda R ^a   Lyons Jr , Robert H ^a   Glover, Thomas W ^a   Wilson, Thomas E ^a  

^a UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

APHIDICOLIN;

ARTICLE; CHROMOSOME 1; CHROMOSOME 13; CHROMOSOME 4; CHROMOSOME 7; COPY NUMBER VARIATION; DNA REPLICATION; GENE DELETION; GENE DUPLICATION; GENE REPLICATION; GENE SEQUENCE; GENETIC VARIABILITY; GENOME ANALYSIS; HUMAN; HUMAN CELL; KARYOTYPE 46,XX; MATE PAIR SEQUENCING; MICROARRAY ANALYSIS; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM; STRESS; TANDEM REPEAT;

APHIDICOLIN; CELL LINE; DNA COPY NUMBER VARIATIONS; DNA DAMAGE; DNA REPLICATION; GENOME, HUMAN; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ANALYSIS, DNA;

EID: 79953224831     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.110.124776     Document Type: Article

References (3)

1. CONRAD, D. F., D. PINTO, R. REDON, L. FEUK, O. GOKCUMEN et al., 2010 Origins and functional impact of copy number variation in the human genome. Nature 464: 704-712.
2. PARK, H., J. I. KIM, Y. S. JU, O. GOKCUMEN, R. E. MILLS et al., 2010 Discovery of common Asian copy number variants using integrated high-resolution array CGH and massively parallel DNA sequencing. Nat Genet 42: 400-405.
3. WANG, K., M. LI, D. HADLEY, R. LIU, J. GLESSNER et al., 2007 PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. Genome Res 17: 1665-1674.