Spatio-temporal expression of miRNAs in tomato tissues upon Cucumber mosaic virus and Tomato aspermy virus infections

Acta Biochimica et Biophysica Sinica

Volumn 43, Issue 4, 2011, Pages 258-266

  Feng, Junli ^a   Liu, Xin ^a   Lai, Leiyu ^a   Chen, Jishuang ^a,b  

^a ZHEJIANG SCI TECH UNIVERSITY   (China)

^b NANJING TECH UNIVERSITY   (China)

Author keywords

Cucumber mosaic virus; gene expression; Solanum lycopersicum; Tomato aspermy virus; tomato miRNA

Indexed keywords

MICRORNA; VEGETABLE PROTEIN;

ARTICLE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; HOST PATHOGEN INTERACTION; MOSAIC VIRUS; NORTHERN BLOTTING; PHYSIOLOGY; PLANT DISEASE; PLANT LEAF; PLANT ROOT; PLANT STEM; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TIME; TOMATO; VIROLOGY;

BLOTTING, NORTHERN; CUCUMOVIRUS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; HOST-PATHOGEN INTERACTIONS; LYCOPERSICON ESCULENTUM; MICRORNAS; PLANT DISEASES; PLANT LEAVES; PLANT PROTEINS; PLANT ROOTS; PLANT STEMS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; TIME FACTORS;

CUCUMBER MOSAIC VIRUS; LYCOPERSICON ESCULENTUM; TOMATO ASPERMY VIRUS;

EID: 79953165041     PISSN: 16729145     EISSN: 17457270     Source Type: Journal    
DOI: 10.1093/abbs/gmr006     Document Type: Article

References (29)

1. Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M and Weigel D. Specific effects of microRNAs on plant transcription. Dev Cell 2005, 8: 517-527. (Pubitemid 40450741)
2. Lu XY and Huang XL. Plant miRNAs and abiotic stress responses. Biochem Biophys Res Commun 2008, 368: 458-462.
3. Voinnet O. Origin, biogenesis, and activity of plant microRNAs. Cell 2009, 136: 669-687.
4. Mlotshwa S, Pruss GJ and Vance V. Small RNAs in viral infection and host defense. Trends Plant Sci 2008, 13: 375-382.
5. Chapman EJ, Prokhnevsky AI, Gopinath K, Dolja VV and Carrington JC. Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step. Genes Dev 2004, 18: 1179-1186. (Pubitemid 38669038)
6. Dunoyer P, Lecellier C, Parizotto EA, Himber C and Voinnet O. Probing the microRNAs and small interfering RNA pathways with virus-encoded suppressors of RNA silencing. Plant Cell 2004, 16: 1235-1250. (Pubitemid 38641517)
7. Levy A, Dafny-Yelin M and Tzfira T. Attacking the defenders: plant viruses fight back. Trends Microbiol 2008, 16: 194-197.
8. Bazzini AA, Hoppp HE, Beachy RN and Asurmendi S. Infection and coaccumulation of tobacco mosaic virus proteins alter microRNA levels, correlating with symptom and plant development. Proc Natl Acad Sci USA 2007, 104: 12157-12162. (Pubitemid 47185646)
9. Berkhout B and Haasnoot J. The interplay between virus infection and the cellular RNA interference machinery. FEBS Lett 2006, 580: 2896-2902 (Pubitemid 43744478)
10. Feng JL, Wang K, Liu X, Chen SN and Chen JS. The quantification of tomato microRNAs response to viral infection by stem-loop real-time RTPCR. Gene 2009, 437: 14-21.
11. Zhang X, Yuan YR, Pei Y, Lin SS, Tuschl T, Patel DJ and Chuan NH. Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute 1 cleavage activity to counter plant defense. Genes Dev 2006, 20: 3255-3268. (Pubitemid 44904848)
12. Lewsey M, Robertson FC, Canto T, Palukaitis P and Carr JP. Selective targeting of miRNA-regulated plant development by a viral counter-silencing protein. Plant J 2007, 50: 240-252. (Pubitemid 46624133)
13. Kasschau KD, Xie Z, Allen E, Llave C, Chapman EJ, Krizan KA and Carrington JC. P1/Hc-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA function. Dev Cell 2003, 4: 205-217. (Pubitemid 36221797)
14. Du ZY, Chen FF, Zhao ZJ, Liao QS, Palukaitis P and Chen JS. The 2b protein and C-terminus of the 2a protein of Cucumber mosaic virus sub- group I strains both play a role in viral RNA accumulation and induction of symptoms. Virology 2008, 380: 363-370.
15. Tang F, Hajkova P, Barton SC, Lao K and Surani MA. MicroRNA expression profiling of single whole embryonic stem cells. Nucleic Acids Res 2006, 34: e9.
16. Chen C, Ridzon DA, Broomer AJ, Zhou Z, Lee DH, Nguyen JT and Barbisin M, et al. Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res 2005, 33: e179.
17. Feng JL, Zeng R and Chen JS. Accurate and efficient data processing for quantitative real-time RT-PCR using a tripartite plant virus as a model. Biotechniques 2008, 44: 901-912 (Pubitemid 352007365)
18. Lee RC, Feinbaum RL and Ambros V. The C. Elegans heterochronic gene line24 encodes small RNAs with antisense comlementarity to line241. Cell 1993, 75: 843-854. (Pubitemid 24014542)
19. SiréC, Moreno AB, Garcia-Chapa M, López-Moya JJ and Segundo BS. Diurnal oscillation in the accumulation of Arabidopsis microRNAs, miR167, miR168, miR171 and miR398. FEBS Lett 2009, 583: 1039-1044.
20. Valoczi A, Varallyay E, Kauppinen S, Burgyan J and Havelda Z. Spatio-temporal accumulation of microRNAs is highly coordinated in developing plant tissues. Plant J 2006, 47: 140-151. (Pubitemid 43883020)
21. Blein T, Pulido A, Vialette-Guiraud A, Nikovics K, Morin H, Hay A and Johansen IE, et al. A conserved molecular framework for compound leaf development. Science 2008, 322: 1835-1839.
22. Berger Y, Harpaz-Saad S, Brand A, Melnik H, Sirding N, Alvarez JP and Zinder M, et al. The NAC-domain transcription factor GOBLET species leaflet boundaries in compound tomato leaves. Development 2009, 136: 823-832.
23. Kinder CA. The many roles of samll RNAs in leaf development. J Genet Genomics 2010, 37: 13-21
24. Zhou GK, Kubo M, Zhong R, Demura T and Ye ZH. Overexpression of miR165 affects apical meristem formation, organ polarity establishment and vascular development in Arabidopsis. Plant Cell Physiol 2007, 48: 391-404. (Pubitemid 47355538)
25. Garcia D. A miracle in plant development: role of microRNAs in cell differentiation and patterning. Semin Cell Dev Biol 2008, 19: 586-595.
26. Chuck G, Candela H and Hake S. Big impacts by small RNAs in plant development. Curr Opin Plant Biol 2009, 12: 81-86.
27. Yang T, Xue L and An L. Functional diversity of miRNA in plant. Plant Sci 2007, 172: 423-432
28. Cillo F, Mascia T, Pasciuto MM and Gallitelli D. Differential effects of mild and severe cucumber mosaic virus strains in the perturbation of microRNA-regulated gene expression in tomato map to the 3' sequence of RNA 2. Mol Plant-Microbe Interact 2009, 22: 1239-1249
29. Lewsey MG, Murphy AM, MacLean D, Dalchau N, Westwood JH, Macaulay K and Bennet MH, et al. Disruption of two defensive signaling pathways by a viral RNA silencing suppressor. Mol Plant-Microbe Interact 2010, 7: 835-845.