General suppression of Escherichia coli O157:H7 in sand-based dairy livestock bedding

Applied and Environmental Microbiology

Volumn 77, Issue 6, 2011, Pages 2113-2121

  Westphal, Andreas ^a,b   Williams, Michele L ^b   Baysal Gure, Fulya ^b   LeJeune, Jeffrey T ^b   Gardener, Brian B McSpadden ^b  

^a INSTITUTE FOR EPIDEMIOLOGY AND PATHOGEN DIAGNOSTICS   (Germany)

^b OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PATHOGENS; BACTERIAL POPULATION; BEDDING MATERIALS; CLONING AND SEQUENCING; COW COMFORT; DAIRY FARMS; E. COLI; E.COLI O157:H7; ESCHERICHIA COLI O157:H7; FIRMICUTES; GAMMAPROTEOBACTERIA; INTRODUCED POPULATIONS; LIVESTOCK BEDDING; LIVESTOCK MANURE; MULTIPLE SAMPLING; NEW OPTIONS; PAIRED COMPARISON; ROOM TEMPERATURE; SAMPLING DATES; TERMINAL RESTRICTION FRAGMENT LENGTH POLYMORPHISMS; TERMINAL RESTRICTION FRAGMENTS;

AGRICULTURE; BACTERIOLOGY; CLONING; MANURES; PATHOGENS; SAND;

ESCHERICHIA COLI;

RNA 16S; SILICON DIOXIDE;

BACTERIUM; CATALYSIS; COLIFORM BACTERIUM; HEAT BALANCE; INOCULATION; INTRODUCED SPECIES; LIVESTOCK; MANURE; MICROBIAL ACTIVITY; PATHOGENICITY; POLYMORPHISM; TEMPERATURE EFFECT;

ANIMAL; ARTICLE; CATTLE; CLASSIFICATION; DAIRYING; ESCHERICHIA COLI; ESCHERICHIA COLI O157; GENETICS; ISOLATION AND PURIFICATION; LIVESTOCK; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE;

ANIMALS; CATTLE; DAIRYING; ESCHERICHIA COLI; ESCHERICHIA COLI O157; LIVESTOCK; MOLECULAR SEQUENCE DATA; RNA, RIBOSOMAL, 16S; SILICON DIOXIDE;

BACTERIA (MICROORGANISMS); BACTEROIDETES; CYTOPHAGA; ESCHERICHIA COLI; FIRMICUTES; FLEXIBACTER; GAMMAPROTEOBACTERIA;

EID: 79953165006     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01655-10     Document Type: Article

References (56)

1. Altschul, S. F., et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
2. Anonymous. 1995. International standard, ISO 10694:1995(E). Soil quality- determination of organic and total carbon after dry combustion (elementary analysis). International Organization for Standardization, Geneva, Switzerland.
3. Baker, K. F., and R. J. Cook. 1974. Biological control of plant pathogens. W. H. Freeman & Co., San Francisco, CA.
4. Baker, K. F., and C. N. Roistacher. 1957. Heat treatment of soil, p. 123-137. In K. F. Baker (ed.), The UC system for producing healthy container-grown plants. Division of Agricultural Sciences, University of California, Oakland, CA.
5. Barkocy-Gallagher, G. A., et al. 2003. Seasonal prevalence of Shiga toxinproducing Escherichia coli, including O157:H7 and non-O157:H7 serotypes, and Salmonella in commercial beef processing plants. J. Food Prot. 66:1978- 1986.
6. Baysal, F., M.-S. Benítez, M. D. Kleinhenz, S. A. Miller, and B. Gardener. 2008. Field management effects on damping-off and early season vigor of crops in a transitional organic cropping system. Phytopathology 98:562-570.
7. Benítez, M.-S., and B. McSpadden Gardener. 2009. Linking sequence to function in soil: sequence-directed isolation of novel bacteria contributing to soilborne disease suppression. Appl. Environ. Microbiol. 75:915-924.
8. Benítez, M.-S., et al. 2007. Multiple statistical approaches of community fingerprint data reveal bacterial populations associated with general disease suppression arising from the application of different organic field management strategies. Soil Biol. Biochem. 39:2289-2301.
9. Borneman, J., and J. O. Becker. 2007. Identifying microorganisms in specific pathogen suppression in soil. Annu. Rev. Phytopathol. 45:153-172.
10. Borneman, J., et al. 2007. Identifying microorganisms involved in specific in situ functions: experimental design considerations for rRNA gene-based population studies and sequence-selective PCR assays, p. 748-757. In Manual of environmental microbiology, 3rd ed. ASM Press, Washington, DC.
11. Chapman, P. A., C. A. Siddons, A. T. Gerdan Malo, and M. A. Harkin. 1997. A 1-year study of Escherichia coli O157:H7 in cattle, sheep, pigs and poultry. Epidemiol. Infect. 119:245-250.
12. Cobbold, R. N., et al. 2007. Rectoanal junction colonization of feedlot cattle by Escherichia coli O157:H7 and its association with supershedders and excretion dynamics. Appl. Environ. Microbiol. 73:1563-1568.
13. Combs, S. M., and M. V. Nathan. 1998. Soil organic matter, p. 53-58 In Recommended chemical soil test procedures for the north central region. NCR publication no. 221. Missouri Agricultural Experiment Station, Columbia, MO.
14. Forshell, L. P., and I. Ekesbo. 1993. Survival of Salmonellas in composted and not composted solid animal manure. Zentralbl. Veterinarmed. B 40: 654-658.
15. Franz, E., and A. H. C. van Bruggen. 2008. Ecology of E. coli O157:H7 and Salmonella enterica in the primary vegetable production chain. Crit. Rev. Microbiol. 34:143-161.
16. Fratamico, P. M., M. Y. Deng, T. P. Strobaugh, and S. A. Palumbo. 1997. Construction and characterization of Escherichia coli O157:H7 strains expressing firefly luciferase and green fluorescent protein and their use in survival studies. J. Food Prot. 60:1167-1175.
17. Freeman, J. T., D. J. Anderson, and D. J. Sexton. 2009. Seasonal peaks in Escherichia coli infections: possible explanations and implications. Clin. Microbiol. Infect. 15:951-953.
18. Hancock, D. D., T. E. Besser, D. H. Rice, D. E. Herriott, and P. I. Tarr. 1997. A longitudinal study of Escherichia coli O157:H7 in fourteen cattle herds. Epidemiol. Infect. 118:193-195.
19. Hogan, J. S., et al. 1999. Bacterial counts associated with sawdust and recycled manure bedding treated with commercial conditioners. J. Dairy Sci. 82:1690-1695.
20. Hoitink, H., and M. Boehm. 1999. Biocontrol within the context of soil microbial communities: a substrate-dependent phenomenon. Annu. Rev. Phytopathol. 37:427-446.
21. Kudva, I. T., K. Blanch, and C. J. Hovde. 1998. Analysis of Escherichia coli O157:H7 survival in ovine or bovine manure and manure slurry. Appl. Environ. Microbiol. 64:3166-3174.
22. LeJeune, J. T., and M. Kauffman. 2005. Effect of sand and sawdust bedding materials on the fecal prevalence of Escherichia coli O157:H7 in dairy cows. Appl. Environ. Microbiol. 71:326-330.
23. LeJeune, J. T., and A. N. Wetzel. 2007. Preharvest control of Escherichia coli O157 in cattle. J. Anim. Sci. 85:E73-E80.
24. Liu, W. T., T. L. Marsh, H. Cheng, and L. J. Forney. 1997. Characterization of microbial diversity by determining restriction fragment length polymor-phisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63:4516-4522.
25. Lung, A. J., et al. 2001. Destruction of Escherichia coli O157:H7 and Salmonella enteritidis in cow manure composting. J. Food Prot. 64:1309-1314.
26. Mazzola, M. 2004. Assessment and management of soil microbial community structure for disease suppression. Annu. Rev. Phytopathol. 42:35-59.
27. McSpadden Gardener, B. B. 1998. Examination of soil and rhizosphere bacterial communities using a modified T-RFLP analysis of amplified 16S rDNA. In Assessing the potential of creating biased rhizospheres based on inositol rhizopines. Ph.D. thesis. Michigan State University, East Lansing, MI.
28. McSpadden Gardener, B. B., and D. M. Weller. 2001. Changes in populations of rhizosphere bacteria associated with take-all disease of wheat. Appl. Environ. Microbiol. 67:4414-4425.
29. McSpadden Gardener, B., L. Gutierrez, R. Joshi, R. Edema, and E. Lutton. 2005. Distribution and biocontrol potential of phlD pseudomonads in corn and soybean fields. Phytopathology 95:715-724.
30. Mulvaney, R. L. 1996. Nitrogen-inorganic forms, p. 1162-1171. In Methods of soil analysis. Part 3. Chemical methods. Soil Science Society of America, Madison, WI.
31. Niushiyama, M., Y. Shiomi, S. Suzuki, and T. Marumoto. 1999. Suppression of growth of Ralstonia solanacearum, tomato bacterial wilt agent, on/in tomato seedlings cultivated in a suppressive soil. Soil Sci. Plant Nutr. 45:79-87.
32. Noble, R., and E. Coventry. 2005. Suppression of soil-borne plant diseases with composts: a review. Biocontrol Sci. Technol. 15:3-20.
33. Norring, M., et al. 2008. Effects of sand and straw bedding on the lying behavior, cleanliness, and hoof and hock injuries of dairy cows. J. Dairy Sci. 91:570-576.
34. Olatinwo, R., J. O. Becker, and J. Borneman. 2006. Suppression of Heterodera schachtii populations by Dactylella oviparasitica in four soils. J. Nematol. 38:345-348.
35. Olatinwo, R., J. O. Becker, and J. Borneman. 2006. Induction of beet-cyst nematode suppressiveness by the fungi Dactylella oviparasitica and Fusarium oxysporum in field microplots. Phytopathology 96:855-859.
36. Paulin-Curlee, G. G., et al. 2008. Molecular subtyping of mastitis-associated Klebsiella pneumoniae isolates shows high levels of diversity within and between dairy herds. J. Dairy Sci. 91:554-563.
37. Raaijmakers, J. M., and D. M. Weller. 1998. Natural plant protection by 2,4-diacetylphloroglucinol-producing Pseudomonas spp. in take-all decline soils. Mol. Plant Microbe Interact. 11:144-152.
38. Ramette, A., Y. Moenne-Loccoz, and G. Defago. 2003. Prevalence of fluorescent pseudomonads producing antifungal phloroglucinols and/or hydrogen cyanide in soils naturally suppressive or conducive to tobacco black root rot. FEMS Microbiol. Ecol. 44:35-43.
39. Riley, L. W., et al. 1983. Hemorrhagic colitis associated with a rare Escherichia coli serotype. N. Engl. J. Med. 308:681-685.
40. Ritchie, J. M., et al. 2003. A stable bioluminescent construct of Escherichia coli O157:H7 for hazard assessments of long-term survival in the environment. Appl. Environ. Microbiol. 69:3359-3367.
41. Rotenberg, D., L. R. Cooperband, and A. Stone. 2005. Dynamic relationships between soil properties and foliar disease as affected by annual additions of organic amendment to a sandy-soil vegetable production system. Soil Biol. Biochem. 37:1343-1357.
42. Rouxel, F., C. Alabouvette, and J. Louvet. 1977. Recherches sur la résistance des sols aux maladies II-incidence de traitements thermiques sur la résistance microbiologique d'un sol à la Fusariose vasculaire du melon. Ann. Phytopathol. 9:183-192.
43. Scheuerell, S. J., D. M. Sullivan, and W. F. Mahaffee. 2005. Suppression of seedling damping-off caused by Pythium ultimum, P. irregulare, and Rhizoctonia solani in container media amended with a diverse range of Pacific Northwest compost sources. Phytopathology 95:306-315.
44. Smith, K. L., D. A. Todhunter, and P. S. Schoenberger. 1985. Environmental mastitis: cause, prevalence, prevention. J. Dairy Sci. 68:1531-1553.
45. Smith, D., et al. 2001. Ecological relationships between the prevalence of cattle shedding Escherichia coli O157:H7 and characteristics of the cattle or conditions of the feedlot pen. J. Food Prot. 64:1899-1903.
46. Stanford, K., et al. 2005. Ecology of Escherichia coli O157:H7 in commercial dairies in southern Alberta. J. Dairy Sci. 88:4441-4451.
47. Stone, A. G., et al. 2003. Effect of organic amendments on soilborne and foliar diseases in field-grown snap bean and cucumber. Plant Dis. 87:1037-1042.
48. Thomas, G. W. 1996. Soil pH and soil acidity, p. 475-490. In Methods of soil analysis. Part 3. Chemical methods. Soil Science Society of America, Madison, WI.
49. Weisburg, W. G., S. M. Barns, D. A. Pelletier, and D. J. Lane. 1991. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173:697-703.
50. Weller, D. M., J. M. Raaijmakers, B. B. Gardener, and L. S. Thomashow. 2002. Microbial populations responsible for specific soil suppressiveness to plant pathogens. Annu. Rev. Phytopathol. 40:309-348.
51. Westphal, A. 2005. Detection and description of soils with specific nematode suppressiveness. J. Nematol. 37:121-130.
52. Westphal, A., and J. O. Becker. 2001. Components of soil suppressiveness against Heterodera schachtii. Soil Biol. Biochem. 33:9-16.
53. Westphal, A., G. T. Browne, and S. Schneider. 2002. Evidence for biological nature of the grape replant problem in California. Plant Soil 242:197-203.
54. Yin, B., L. Valinsky, X. Gao, J. O. Becker, and J. Borneman. 2003. Bacterial rRNA genes associated with soil suppressiveness against the plant-parasitic nematode Heterodera schachtii. Appl. Environ. Microbiol. 69:1573-1580.
55. Yin, B., L. Valinsky, X. Gao, J. O. Becker, and J. Borneman. 2003. Identification of fungal rDNA associated with soil suppressivenesss against Heterodera schachtii using oligonucleotide fingerprinting. Phytopathology 93: 1006-1013.
56. Zdanowicz, M., J. A. Shelford, C. B. Tucker, D. M. Weary, and M. A. von Keyserlingk. 2004. Bacterial populations on teat ends of dairy cows housed in free stalls and bedded with either sand or sawdust. J. Dairy Sci. 87:1694-1701.