메뉴 건너뛰기




Volumn 4, Issue , 2011, Pages

Genome-wide transcriptomic analysis of the response to nitrogen limitation in Streptomyces coelicolor A3(2)

Author keywords

[No Author keywords available]

Indexed keywords

STREPTOMYCES COELICOLOR;

EID: 79953103579     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-4-78     Document Type: Article
Times cited : (21)

References (37)
  • 1
    • 0025037357 scopus 로고
    • Pigmented antibiotic production by Streptomyces coelicolor A3(2): Kinetics and the influence of nutrients
    • Pigmented antibiotic production by Streptomyces coelicolor A3(2): kinetics and influence of nutrients. G Hobbs CM Frazer DCJ Gardner F Flett SG Oliver, Journal of General Microbiology 1990 136 2291 2296 (Pubitemid 20378735)
    • (1990) Journal of General Microbiology , vol.136 , Issue.11 , pp. 2291-2296
    • Hobbs, G.1    Frazer, C.M.2    Gardner, D.C.J.3    Flett, F.4    Oliver, S.G.5
  • 2
    • 0020620442 scopus 로고
    • The application of materials balancing to the characterization of sequential secondary metabolite formation in Streptomyces cattleya NRRL 8057
    • The application of materials balancing to the characterization of sequential secondary metabolite formation in Streptomyces cattleya NRRL 8057. A Fryday, Journal of General Microbiology 1983 129 1733 1741 6195301 (Pubitemid 13044277)
    • (1983) Journal of General Microbiology , vol.129 , Issue.6 , pp. 1733-1741
    • Bushell, M.E.1    Fryday, A.2
  • 3
    • 33845740146 scopus 로고    scopus 로고
    • Nitrogen metabolism in Streptomyces coelicolor: Transcriptional and post-translational regulation
    • DOI 10.1159/000096469
    • Nitrogen metabolism in Streptomyces coelicolor: Transcriptional and post-translational regulation. J Reuther W Wohlleben, Journal of Molecular Microbiology and Biotechnology 2007 12 139 146 10.1159/000096469 17183221 (Pubitemid 46011135)
    • (2007) Journal of Molecular Microbiology and Biotechnology , vol.12 , Issue.1-2 , pp. 139-146
    • Reuther, J.1    Wohlleben, W.2
  • 4
    • 58149202834 scopus 로고    scopus 로고
    • Regulation of nitrogen metabolism in Mycobacterium tuberculosis: A comparison with mechanisms in Cornebacterium glutamicum and Streptomyces coelicolor
    • 10.1002/iub.100
    • Regulation of nitrogen metabolism in Mycobacterium tuberculosis: a comparison with mechanisms in Cornebacterium glutamicum and Streptomyces coelicolor. C Harper D Hayward I Wiid P van Helden, IUMB Life 2008 60 643 650 10.1002/iub.100
    • (2008) IUMB Life , vol.60 , pp. 643-650
    • Harper, C.1    Hayward, D.2    Wiid, I.3    Van Helden, P.4
  • 5
    • 0024269834 scopus 로고
    • Cloning and nucleotide sequence of the Streptomyces coelicolor gene encoding glutamine synthetase
    • DOI 10.1016/0378-1119(88)90041-8
    • Cloning and nucleotide sequence of the Streptomyces coelicolor gene encoding glutamine synthetase. LV Wray SH Fisher, Gene 1988 71 247 256 10.1016/0378-1119(88)90041-8 2906310 (Pubitemid 19010844)
    • (1988) Gene , vol.71 , Issue.2 , pp. 247-256
    • Wray Jr., L.V.1    Fisher, S.H.2
  • 6
    • 33751394705 scopus 로고    scopus 로고
    • Investigation of the functional properties and regulation of three glutamine synthetase-like genes in Streptomyces coelicolor A3(2)
    • DOI 10.1007/s00203-006-0159-8
    • Investigation of the functional properties and regulation of three glutamine synthetase-like genes in Streptomyces coelicolor A3(2). HU Rexer T Schaberle W Wohlleben A Engels, Arch. Microbiol 2006 186 447 458 10.1007/s00203-006-0159-8 16932908 (Pubitemid 44819323)
    • (2006) Archives of Microbiology , vol.186 , Issue.6 , pp. 447-458
    • Rexer, H.U.1    Schaberle, T.2    Wohlleben, W.3    Engels, A.4
  • 7
    • 0024670364 scopus 로고
    • Regulation of glutamine synthetase in Streptomyces coelicolor
    • 2468647
    • Regulation of glutamine synthetase in Streptomyces coelicolor. SH Fisher LV Wray, Journal of Bacteriology 1989 171 2378 2383 2468647
    • (1989) Journal of Bacteriology , vol.171 , pp. 2378-2383
    • Fisher, S.H.1    Wray, L.V.2
  • 8
    • 0033748007 scopus 로고    scopus 로고
    • Transcriptional analysis of the gene for glutamine synthetase II and two upstream genes in Streptomyces coelicolor A3(2)
    • Transcriptional analysis of the gene for glutamine synthetase II and two upstream genes in Streptomyces coelicolor A3(2). N Weisschuh D Fink S Vierling MJ Bibb W Wohlleben A Engels, Molecular & General Genetics 2000 264 461 469
    • (2000) Molecular & General Genetics , vol.264 , pp. 461-469
    • Weisschuh, N.1    Fink, D.2    Vierling, S.3    Bibb, M.J.4    Wohlleben, W.5    Engels, A.6
  • 9
    • 18744383916 scopus 로고    scopus 로고
    • Two transcriptional regulators GlnR and GlnRII are involved in regulation of nitrogen metabolism in Streptomyces coelicolor A3(2)
    • DOI 10.1046/j.1365-2958.2002.03150.x
    • Two transcriptional regulators GlnR and GlnRII are involved in regulation of nitrogen metabolism in Streptomyces coelicolor A3(2). D Fink N Weisschuh J Reuther W Wohlleben A Engels, Molecular Microbiology 2002 2 331 347 10.1046/j.1365-2958.2002.03150.x (Pubitemid 35340947)
    • (2002) Molecular Microbiology , vol.46 , Issue.2 , pp. 331-347
    • Fink, D.1    Weissschuh, N.2    Reuther, J.3    Wohlleben, W.4    Engels, A.5
  • 10
    • 0032855884 scopus 로고    scopus 로고
    • Nitrogen metabolism in Streptomyces coelicolor A3(2): Modification of glutamine synthetase by an adenylyltransferase
    • Nitrogen metabolism in Streptomyces coelicolor A3(2): modification of glutamine synthetase by an adenylyltransferase. D Fink D Falke W Wohlleben A Engels, Microbiology 1999 145 2315 2322
    • (1999) Microbiology , vol.145 , pp. 2315-2322
    • Fink, D.1    Falke, D.2    Wohlleben, W.3    Engels, A.4
  • 11
    • 0036430005 scopus 로고    scopus 로고
    • The GlnD and GlnK homologues of Streptomyces coelicolor A3(2) are functionally dissimilar to their nitrogen regulatory system counterparts from enteric bacteria
    • DOI 10.1046/j.1365-2958.2002.03149.x
    • The GlnD and GlnK homologues of Streptomyces coelicolor A3(2) are functionally dissimilar to their nitrogen regulatory system counterparts from enteric bacteria. A Hesketh D Fink B Gust HU Rexer B Scheel K Chater W Wohlleben A Engels, Molecular Microbiology 2002 2 319 330 10.1046/j.1365-2958.2002.03149. x (Pubitemid 35340946)
    • (2002) Molecular Microbiology , vol.46 , Issue.2 , pp. 319-330
    • Hesketh, A.1    Fink, D.2    Gust, B.3    Rexer, H.-U.4    Scheel, B.5    Chater, K.6    Wohlleben, W.7    Engels, A.8
  • 12
    • 75749085389 scopus 로고    scopus 로고
    • Noncoding RNA of Glutamine synthetase i modulates antibiotic production in Streptomyces coelicolor A3(2)
    • Noncoding RNA of Glutamine synthetase I modulates antibiotic production in Streptomyces coelicolor A3(2). D D'Alia K Nieselt S Steigle J Muller I Verberg E Takano, Journal of Bacteriology 2002 192 1160 1164
    • (2002) Journal of Bacteriology , vol.192 , pp. 1160-1164
    • D'Alia, D.1    Nieselt, K.2    Steigle, S.3    Muller, J.4    Verberg, I.5    Takano, E.6
  • 13
    • 0027169727 scopus 로고
    • The Streptomyces coelicolor glnR gene encodes a protein similar to other bacterial response regulators
    • 10.1016/0378-1119(93)90359-B. 7688332
    • The Streptomyces coelicolor glnR gene encodes a protein similar to other bacterial response regulators. LV Wray SH Fisher, Gene 1993 130 145 150 10.1016/0378-1119(93)90359-B 7688332
    • (1993) Gene , vol.130 , pp. 145-150
    • Wray, L.V.1    Fisher, S.H.2
  • 14
    • 0025824741 scopus 로고
    • Identification and cloning of the glnR locus, which is required for transcription of the glnA gene in Streptomyces coelicolor A3(2)
    • 1718946
    • Identification and cloning of the glnR locus, which is required for transcription of the glnA gene in Streptomyces coelicolor A3(2). LV Wray MR Atkinson SH Fisher, Journal of Bacteriology 1991 173 7351 7360 1718946
    • (1991) Journal of Bacteriology , vol.173 , pp. 7351-7360
    • Wray, L.V.1    Atkinson, M.R.2    Fisher, S.H.3
  • 15
    • 38449097896 scopus 로고    scopus 로고
    • The Streptomyces coelicolor GlnR regulon: Identification of new GlnR targets and evidence for a central role of GlnR in nitrogen metabolism in actinomycetes
    • DOI 10.1111/j.1365-2958.2007.06092.x
    • The Streptomyces coelicolor GlnR regulon: identification of new GlnR targets and evidence for a central role of GlnR in nitrogen metabolism in actinomycetes. Y Tiffert P Supra R Wurm W Wohlleben R Wagner J Reuther, Molecular Microbiology 2008 67 861 880 10.1111/j.1365-2958.2007.06092.x 18179599 (Pubitemid 351143689)
    • (2008) Molecular Microbiology , vol.67 , Issue.4 , pp. 861-880
    • Tiffert, Y.1    Supra, P.2    Wurm, R.3    Wohlleben, W.4    Wagner, R.5    Reuther, J.6
  • 16
    • 67649173018 scopus 로고    scopus 로고
    • GlnR positively regulates nasA transcription in Streptomyces coelicolor
    • 10.1016/j.bbrc.2009.05.147. 19501565
    • GlnR positively regulates nasA transcription in Streptomyces coelicolor. J Wang G-P Zhao, Biochemical and Biophysical Research Communications 2009 386 77 81 10.1016/j.bbrc.2009.05.147 19501565
    • (2009) Biochemical and Biophysical Research Communications , vol.386 , pp. 77-81
    • Wang, J.1    Zhao, G.-P.2
  • 17
    • 67249083329 scopus 로고    scopus 로고
    • Phosphate control over nitrogen metabolism in Streptomyces coelicolor: Direct and indirect negative control of glnR, glnA, glnII and amtB expression by the response regulator PhoP
    • 10.1093/nar/gkp162. 19321498
    • Phosphate control over nitrogen metabolism in Streptomyces coelicolor: direct and indirect negative control of glnR, glnA, glnII and amtB expression by the response regulator PhoP. A Rodriguez-Garcia A Sola-Landa K Apel F Santos-Beneit JF Martin, Nucleic Acids Research 2009 37 3230 3242 10.1093/nar/gkp162 19321498
    • (2009) Nucleic Acids Research , vol.37 , pp. 3230-3242
    • Rodriguez-Garcia, A.1    Sola-Landa, A.2    Apel, K.3    Santos-Beneit, F.4    Martin, J.F.5
  • 18
    • 34547144162 scopus 로고    scopus 로고
    • Genome-wide transcriptomic and proteomic analysis of the primary response to phosphate limitation in Streptomyces coelicolor M145 and in a phoP mutant
    • DOI 10.1002/pmic.200600883
    • Genome wide transcriptomic and proteomic analysis of the primary response to phosphate limitation in Streptomyces coelicolor M145 and in a DeltaphoP mutant. A Rodriguez-Garcia C Barreiro F Santos-Beneit A Sola-Landa JF Martin, Proteomics 2007 14 2410 2429 10.1002/pmic.200600883 (Pubitemid 47121533)
    • (2007) Proteomics , vol.7 , Issue.14 , pp. 2410-2429
    • Rodriguez-Garcia, A.1    Barreiro, C.2    Santos-Beneit, F.3    Sola-Landa, A.4    Martin, J.F.5
  • 22
    • 0021913058 scopus 로고
    • Identification of a red pigment from Streptomyces coelicolor A3(2) as a mixture of prodigiosin derivatives
    • Identification of a red pigment from Streptomyces coelicolor A3(2) as a mixture of prodigiosin derivatives. SW Tsao BA Rudd XG He CJ Chang HG Floss, Journal of Antibiotics (Tokyo) 1985 38 128 131 (Pubitemid 15152736)
    • (1985) Journal of Antibiotics , vol.38 , Issue.1 , pp. 128-131
    • Tsao, S.W.1    Rudd, B.A.M.2    He, X.-G.3
  • 24
    • 35748948065 scopus 로고    scopus 로고
    • New pleiotropic effects of eliminating a rare tRNA from Streptomyces coelicolor revealed by combined proteomic and transcriptomic analysis of liquid cultures
    • 10.1186/1471-2164-8-261. 17678549
    • New pleiotropic effects of eliminating a rare tRNA from Streptomyces coelicolor revealed by combined proteomic and transcriptomic analysis of liquid cultures. A Hesketh G Bucca E Laing F Flett G Hotchkiss CP Smith KF Chater, BMC Genomics 2007 8 261 10.1186/1471-2164-8-261 17678549
    • (2007) BMC Genomics , vol.8 , pp. 261
    • Hesketh, A.1    Bucca, G.2    Laing, E.3    Flett, F.4    Hotchkiss, G.5    Smith, C.P.6    Chater, K.F.7
  • 26
    • 28444445926 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing: Vienna, Austria. ISBN 3-900051-07-0
    • R: A language and environment for statistical computing R Foundation for Statistical Computing: Vienna, Austria 2005 ISBN 3-900051-07-0
    • (2005) R: A Language and Environment for Statistical Computing
  • 27
    • 33644872577 scopus 로고    scopus 로고
    • Limma: Linear models for microarray data
    • New York: Springer Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W. full-text
    • Limma: linear models for microarray data. GK Smyth, Bioinformatics and Computational Biology Solutions using R and Bioconductor New York: Springer, Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W, 2005 397 420 full-text
    • (2005) Bioinformatics and Computational Biology Solutions Using R and Bioconductor , pp. 397-420
    • Smyth, G.K.1
  • 28
    • 0242333835 scopus 로고    scopus 로고
    • Normalization of cDNA microarray data
    • DOI 10.1016/S1046-2023(03)00155-5
    • Normalization of cDNA microarray data. GK Smyth TP Speed, Methods 2003 31 265 273 10.1016/S1046-2023(03)00155-5 14597310 (Pubitemid 37338763)
    • (2003) Methods , vol.31 , Issue.4 , pp. 265-273
    • Smyth, G.K.1    Speed, T.2
  • 29
    • 4344571581 scopus 로고    scopus 로고
    • Rank products: A simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments
    • DOI 10.1016/j.febslet.2004.07.055, PII S0014579304009354
    • Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments. R Breitling P Armengaud A Amtmann P Herzyk, FEBS Letters 2004 573 83 92 10.1016/j.febslet.2004.07.055 15327980 (Pubitemid 39141040)
    • (2004) FEBS Letters , vol.573 , Issue.1-3 , pp. 83-92
    • Breitling, R.1    Armengaud, P.2    Amtmann, A.3    Herzyk, P.4
  • 30
    • 33751006151 scopus 로고    scopus 로고
    • RankProd: A bioconductor package for detecting differentially expressed genes in meta-analysis
    • DOI 10.1093/bioinformatics/btl476
    • RankProd: A Bioconductor package for detecting differentially expressed gene in meta-analysis. F Hong R Breitling CW McEntee BS Wittner JL Nemhauser J Chory, Bioinformatics 2006 22 2825 2827 10.1093/bioinformatics/btl476 16982708 (Pubitemid 44742407)
    • (2006) Bioinformatics , vol.22 , Issue.22 , pp. 2825-2827
    • Hong, F.1    Breitling, R.2    McEntee, C.W.3    Wittner, B.S.4    Nemhauser, J.L.5    Chory, J.6
  • 31
    • 50849128158 scopus 로고    scopus 로고
    • Finding new pathway specific regulators by clustering method using threshold standard deviation based on DNA chip data of Streptomyces coelicolor
    • Finding new pathway specific regulators by clustering method using threshold standard deviation based on DNA chip data of Streptomyces coelicolor. Y-H Yang J-N Kim E Song E Kim M-K Oh B-G Kim, Applied and Environmental Microbiology 2008 80 709 717
    • (2008) Applied and Environmental Microbiology , vol.80 , pp. 709-717
    • Yang, Y.-H.1    Kim, J.-N.2    Song, E.3    Kim, E.4    Oh, M.-K.5    Kim, B.-G.6
  • 32
    • 34249805418 scopus 로고    scopus 로고
    • Interspecies DNA microarray analysis identifies WblA as a pleiotropic down-regulator of antibiotic biosynthesis in Streptomyces
    • DOI 10.1128/JB.01789-06
    • Interspecies DNA microarray analysis identifies WblA as a pleiotropic down-regulator of antibiotic biosynthesis in Streptomyces. SH Kang J Huang H-N Lee Y-A Hur SN Cohen E-S Kim, Journal of Bacteriology 2007 189 4315 4319 10.1128/JB.01789-06 17416669 (Pubitemid 46847381)
    • (2007) Journal of Bacteriology , vol.189 , Issue.11 , pp. 4315-4319
    • Kang, S.-H.1    Huang, J.2    Lee, H.-N.3    Hur, Y.-A.4    Cohen, S.N.5    Kim, E.-S.6
  • 33
    • 33747043508 scopus 로고    scopus 로고
    • The sugar phosphotransferase system of Streptomyces coelicolor is regulated by the GntR-family regulator DasR and links N-acetylglucosamine metabolism to the control of development
    • DOI 10.1111/j.1365-2958.2006.05319.x
    • The sugar phosphotransferase system of Streptomyces coelicolor is regulated by the GntR-family regulator DasR and links N-acetylglucosamine metabolism to the control of development. S Rigali H Nohaft EE Noens M Schlicht S Colson M Muller B Joris HK Koerten DA Hopwood F Titgemeyer GP van Wezel, Molecular Microbiology 2006 61 1237 1251 10.1111/j.1365-2958.2006.05319.x 16925557 (Pubitemid 44215424)
    • (2006) Molecular Microbiology , vol.61 , Issue.5 , pp. 1237-1251
    • Rigali, S.1    Nothaft, H.2    Noens, E.E.E.3    Schlicht, M.4    Colson, S.5    Muller, M.6    Joris, B.7    Koerten, H.K.8    Hopwood, D.A.9    Titgemeyer, F.10    Van Wezel, G.P.11
  • 34
    • 55549086478 scopus 로고    scopus 로고
    • A possible extended family of regulators of sigma factor activity in Streptomyces coelicolor
    • 10.1128/JB.00470-08. 18790871
    • A possible extended family of regulators of sigma factor activity in Streptomyces coelicolor. ES Kim JY Song DW Kim KF Chater KJ Lee, Journal of Bacteriology 2008 190 7559 7566 10.1128/JB.00470-08 18790871
    • (2008) Journal of Bacteriology , vol.190 , pp. 7559-7566
    • Kim, E.S.1    Song, J.Y.2    Kim, D.W.3    Chater, K.F.4    Lee, K.J.5
  • 36
    • 44949239504 scopus 로고    scopus 로고
    • Discovering sequence motifs with arbitrary insertions and deletions
    • 10.1371/journal.pcbi.1000071. 18437229
    • Discovering sequence motifs with arbitrary insertions and deletions. MC Frith NFW Saunders B Kobe TL Bailey, PLoS Computational Biology 2008 4 1000071 10.1371/journal.pcbi.1000071 18437229
    • (2008) PLoS Computational Biology , vol.4 , pp. 51000071
    • Frith, M.C.1    Saunders, N.F.W.2    Kobe, B.3    Bailey, T.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.