-
1
-
-
0037371743
-
Uridine insertion/deletion RNA editing in trypanosome mitochondria: A complex business
-
DOI 10.1261/rna.2178403
-
Simpson L, Sbicego S, Aphasizhev R (2003) Uridine insertion/deletion RNA editing in trypanosome mitochondria: A complex business. RNA 9:265-276. (Pubitemid 36246164)
-
(2003)
RNA
, vol.9
, Issue.3
, pp. 265-276
-
-
Simpson, L.1
Sbicego, S.2
Aphasizhev, R.3
-
2
-
-
13244290067
-
Complex management: RNA editing in trypanosomes
-
DOI 10.1016/j.tibs.2004.12.006, PII S0968000404003202
-
Stuart KD, Schnaufer A, Ernst NL, Panigrahi AK (2005) Complex management: RNA editing in trypanosomes. Trends Biochem Sci 30:97-105. (Pubitemid 40187302)
-
(2005)
Trends in Biochemical Sciences
, vol.30
, Issue.2
, pp. 97-105
-
-
Stuart, K.D.1
Schnaufer, A.2
Ernst, N.L.3
Panigrahi, A.K.4
-
3
-
-
0025189769
-
A model for RNA editing in kinetoplastid mitochondria: "Guide" RNA molecules transcribed from maxicircle DNA provide the edited information
-
Blum B, Bakalara N, Simpson L (1990) A model for RNA editing in kinetoplastid mitochondria: "Guide" RNA molecules transcribed from maxicircle DNA provide the edited information. Cell 60:189-198.
-
(1990)
Cell
, vol.60
, pp. 189-198
-
-
Blum, B.1
Bakalara, N.2
Simpson, L.3
-
4
-
-
67649305168
-
Uridine insertion/deletion RNA editing in trypanosomatid mitochondria: In search of the editosome
-
Osato D, et al. (2009) Uridine insertion/deletion RNA editing in trypanosomatid mitochondria: In search of the editosome. RNA 15:1338-1344.
-
(2009)
RNA
, vol.15
, pp. 1338-1344
-
-
Osato, D.1
-
5
-
-
72649096964
-
Guide to the nomenclature of kinetoplastid RNA editing: A proposal
-
Simpson L, Aphasizhev R, Lukes J, Cruz-Reyes J (2010) Guide to the nomenclature of kinetoplastid RNA editing: A proposal. Protist 161:2-6.
-
(2010)
Protist
, vol.161
, pp. 2-6
-
-
Simpson, L.1
Aphasizhev, R.2
Lukes, J.3
Cruz-Reyes, J.4
-
6
-
-
0037450771
-
Isolation of a U-insertion/deletion editing complex from Leishmania tarentolae mitochondria
-
DOI 10.1093/emboj/cdg083
-
Aphasizhev R, et al. (2003) Isolation of a U-insertion/deletion editing complex from Leishmania tarentolae mitochondria. EMBO J 22:913-924. (Pubitemid 36227793)
-
(2003)
EMBO Journal
, vol.22
, Issue.4
, pp. 913-924
-
-
Aphasizhev, R.1
Aphasizheva, I.2
Nelson, R.E.3
Gao, G.4
Simpson, A.M.5
Kang, X.6
Falick, A.M.7
Sbicego, S.8
Simpson, L.9
-
7
-
-
68149089810
-
Structure of the core editing complex (L-complex) involved in uridine insertion/deletion RNA editing in trypanosomatid mitochondria
-
Li F, et al. (2009) Structure of the core editing complex (L-complex) involved in uridine insertion/deletion RNA editing in trypanosomatid mitochondria. Proc Natl Acad Sci USA 106:12306-12310.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 12306-12310
-
-
Li, F.1
-
8
-
-
1642580825
-
Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U-insertion/deletion RNA editing
-
DOI 10.1261/rna.5170704
-
Simpson L, Aphasizhev R, Gao G, Kang X (2004) Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U-insertion/deletion RNA editing. RNA 10:159-170. (Pubitemid 38129820)
-
(2004)
RNA
, vol.10
, Issue.2
, pp. 159-170
-
-
Simpson, L.1
Aphasizhev, R.2
Gao, G.3
Kang, X.4
-
9
-
-
0344668871
-
Comparative analysis of editosome proteins in trypanosomatids
-
DOI 10.1093/nar/gkg870
-
Worthey EA, Schnaufer A, Mian IS, Stuart K, Salavati R (2003) Comparative analysis of editosome proteins in trypanosomatids. Nucleic Acids Res 31:6392-6408. (Pubitemid 37508743)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.22
, pp. 6392-6408
-
-
Worthey, E.A.1
Schnaufer, A.2
Mian, I.S.3
Stuart, K.4
Salavati, R.5
-
10
-
-
62649115927
-
Snapshots of the RNA editing machine in trypanosomes captured at different assembly stages in vivo
-
Golas MM, et al. (2009) Snapshots of the RNA editing machine in trypanosomes captured at different assembly stages in vivo. EMBO J 28:766-778.
-
(2009)
EMBO J
, vol.28
, pp. 766-778
-
-
Golas, M.M.1
-
11
-
-
0037276124
-
A 100-kD complex of two RNA-binding proteins from mitochondria of Leishmania tarentolae catalyzes RNA annealing and interacts with several RNA editing components
-
DOI 10.1261/rna.2134303
-
Aphasizhev R, Aphasizheva I, Nelson RE, Simpson L (2003) A 100-kD complex of two RNA-binding proteins from mitochondria of Leishmania tarentolae catalyzes RNA annealing and interacts with several RNA editing components. RNA 9:62-76. (Pubitemid 36206303)
-
(2003)
RNA
, vol.9
, Issue.1
, pp. 62-76
-
-
Aphasizhev, R.1
Aphasizheva, I.2
Nelson, R.E.3
Simpson, L.4
-
12
-
-
33747478692
-
Crystal Structures of T. brucei MRP1/MRP2 Guide-RNA Binding Complex Reveal RNA Matchmaking Mechanism
-
DOI 10.1016/j.cell.2006.06.047, PII S0092867406009640
-
Schumacher MA, Karamooz E, Zikova A, Trantirek L, Lukes J (2006) Crystal structures of T. brucei MRP1/MRP2 guide-RNA binding complex reveal RNA matchmaking mechanism. Cell 126:701-711. (Pubitemid 44255808)
-
(2006)
Cell
, vol.126
, Issue.4
, pp. 701-711
-
-
Schumacher, M.A.1
Karamooz, E.2
Zikova, A.3
Trantirek, L.4
Lukes, J.5
-
13
-
-
53949111444
-
Guide RNA-binding complex from mitochondria of trypanosomatids
-
Weng J, et al. (2008) Guide RNA-binding complex from mitochondria of trypanosomatids. Mol Cell 32:198-209.
-
(2008)
Mol Cell
, vol.32
, pp. 198-209
-
-
Weng, J.1
-
14
-
-
62549093977
-
Kinetoplastid guide RNA biogenesis is dependent on subunits of the mitochondrial RNA binding complex 1 and mitochondrial RNA polymerase
-
Hashimi H, Čičová Z, Novotná L, Wen YZ, Lukeš J (2009) Kinetoplastid guide RNA biogenesis is dependent on subunits of the mitochondrial RNA binding complex 1 and mitochondrial RNA polymerase. RNA 15:588-599.
-
(2009)
RNA
, vol.15
, pp. 588-599
-
-
Hashimi, H.1
Čičová, Z.2
Novotná, L.3
Wen, Y.Z.4
Lukeš, J.5
-
15
-
-
58249121139
-
The MRB1 complex functions in kinetoplastid RNA processing
-
Acestor N, Panigrahi AK, Carnes J, Zikova A, Stuart KD (2009) The MRB1 complex functions in kinetoplastid RNA processing. RNA 15:277-286.
-
(2009)
RNA
, vol.15
, pp. 277-286
-
-
Acestor, N.1
Panigrahi, A.K.2
Carnes, J.3
Zikova, A.4
Stuart, K.D.5
-
16
-
-
74049139574
-
REH2 RNA helicase in kinetoplastid mitochondria: Ribonucleoprotein complexes and essential motifs for unwinding and guide RNA (gRNA) binding
-
Hernandez A, et al. (2010) REH2 RNA helicase in kinetoplastid mitochondria: Ribonucleoprotein complexes and essential motifs for unwinding and guide RNA (gRNA) binding. J Biol Chem 285:1220-1228.
-
(2010)
J Biol Chem
, vol.285
, pp. 1220-1228
-
-
Hernandez, A.1
-
17
-
-
33750517762
-
Alternative editing of cytochrome c oxidase III mRNA in trypanosome mitochondria generates protein diversity
-
DOI 10.1038/sj.embor.7400817, PII 7400817
-
Ochsenreiter T, Hajduk SL (2006) Alternative editing of cytochrome c oxidase III mRNA in trypanosome mitochondria generates protein diversity. EMBO Rep 7:1128-1133. (Pubitemid 44660569)
-
(2006)
EMBO Reports
, vol.7
, Issue.11
, pp. 1128-1133
-
-
Ochsenreiter, T.1
Hajduk, S.L.2
-
18
-
-
0024279854
-
Extensive editing of the cytochrome c oxidase III transcript in Trypanosoma brucei
-
Feagin JE, Abraham J, Stuart K (1988) Extensive editing of the cytochrome c oxidase III transcript in Trypanosoma brucei. Cell 53:413-422.
-
(1988)
Cell
, vol.53
, pp. 413-422
-
-
Feagin, J.E.1
Abraham, J.2
Stuart, K.3
-
19
-
-
0026710969
-
The polarity of editing within a multiple gRNA-mediated domain is due to formation of anchors for upstream gRNAs by downstream editing
-
Maslov DA, Simpson L (1992) The polarity of editing within a multiple gRNA-mediated domain is due to formation of anchors for upstream gRNAs by downstream editing. Cell 70:459-467.
-
(1992)
Cell
, vol.70
, pp. 459-467
-
-
Maslov, D.A.1
Simpson, L.2
-
20
-
-
0028029835
-
Trypanosoma brucei mitochondria contain RNA helicase activity
-
Missel A, Goringer HU (1994) Trypanosoma brucei mitochondria contain RNA helicase activity. Nucleic Acids Res 22:4050-4056. (Pubitemid 24322704)
-
(1994)
Nucleic Acids Research
, vol.22
, Issue.20
, pp. 4050-4056
-
-
Missel, A.1
Goringer, H.U.2
-
21
-
-
0030848282
-
Disruption of a gene encoding a novel mitochondrial DEAD-Box protein in Trypanosoma brucei affects edited mRNAs
-
Missel A, Souza AE, Norskau G, Goringer HU (1997) Disruption of a gene encoding a novel mitochondrial DEAD-box protein in Trypanosoma brucei affects edited mRNAs. Mol Cell Biol 17:4895-4903. (Pubitemid 27357590)
-
(1997)
Molecular and Cellular Biology
, vol.17
, Issue.9
, pp. 4895-4903
-
-
Missel, A.1
Souza, A.E.2
Norskau, G.3
Goringer, H.U.4
-
22
-
-
0041927730
-
Genomic organization of Trypanosoma brucei kinetoplast DNA minicircles
-
DOI 10.1078/143446103322166554
-
Hong M, Simpson L (2003) Genomic organization of Trypanosoma brucei kinetoplast DNA minicircles. Protist 154:265-279. (Pubitemid 37029271)
-
(2003)
Protist
, vol.154
, Issue.2
, pp. 265-279
-
-
Hong, M.1
Simpson, L.2
-
23
-
-
33845897113
-
KISS: The kinetoplastid RNA editing sequence search tool
-
DOI 10.1261/rna.232907
-
Ochsenreiter T, Cipriano M, Hajduk SL (2007) KISS: The kinetoplastid RNA editing sequence search tool. RNA 13:1-4. (Pubitemid 46026174)
-
(2007)
RNA
, vol.13
, Issue.1
, pp. 1-4
-
-
Ochsenreiter, T.1
Cipriano, M.2
Hajduk, S.L.3
-
24
-
-
0034841844
-
The tandem affinity purification (TAP) method: A general procedure of protein complex purification
-
DOI 10.1006/meth.2001.1183
-
Puig O, et al. (2001) The tandem affinity purification (TAP) method: A general procedure of protein complex purification. Methods 24:218-229. (Pubitemid 32846428)
-
(2001)
Methods
, vol.24
, Issue.3
, pp. 218-229
-
-
Puig, O.1
Caspary, F.2
Rigaut, G.3
Rutz, B.4
Bouveret, E.5
Bragado-Nilsson, E.6
Wilm, M.7
Seraphin, B.8
-
25
-
-
33344473656
-
The DEAD-box protein family of RNA helicases
-
DOI 10.1016/j.gene.2005.10.019, PII S0378111905006359
-
Cordin O, Banroques J, Tanner NK, Linder P (2006) The DEAD-box protein family of RNA helicases. Gene 367:17-37. (Pubitemid 43286737)
-
(2006)
Gene
, vol.367
, Issue.1-2
, pp. 17-37
-
-
Cordin, O.1
Banroques, J.2
Tanner, N.K.3
Linder, P.4
-
26
-
-
0028205679
-
Characterization of two classes of ribonucleoprotein complexes possibly involved in RNA editing from Leishmania tarentolae mitochondria
-
Peris M, et al. (1994) Characterization of two classes of ribonucleoprotein complexes possibly involved in RNA editing from Leishmania tarentolae mitochondria. EMBO J 13:1664-1672. (Pubitemid 24114718)
-
(1994)
EMBO Journal
, vol.13
, Issue.7
, pp. 1664-1672
-
-
Peris, M.1
Frech, G.C.2
Simpson, A.M.3
Bringaud, F.4
Byrne, E.5
Bakker, A.6
Simpson, L.7
-
27
-
-
33749332762
-
Structure of the exon junction core complex with a trapped DEAD-Box ATPase bound to RNA
-
DOI 10.1126/science.1131981
-
Andersen CB, et al. (2006) Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA. Science 313(5795):1968-1972. (Pubitemid 44498005)
-
(2006)
Science
, vol.313
, Issue.5795
, pp. 1968-1972
-
-
Andersen, C.B.F.1
Ballut, L.2
Johansen, J.S.3
Chamieh, H.4
Nielsen, K.H.5
Oliveira, C.L.P.6
Pedersen, J.S.7
Seraphin, B.8
Hir, H.L.9
Andersen, G.R.10
-
28
-
-
33747182255
-
The Crystal Structure of the Exon Junction Complex Reveals How It Maintains a Stable Grip on mRNA
-
DOI 10.1016/j.cell.2006.08.006, PII S0092867406010270
-
Bono F, Ebert J, Lorentzen E, Conti E (2006) The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA. Cell 126:713-725. (Pubitemid 44233638)
-
(2006)
Cell
, vol.126
, Issue.4
, pp. 713-725
-
-
Bono, F.1
Ebert, J.2
Lorentzen, E.3
Conti, E.4
-
29
-
-
25844432236
-
The putative RNA helicase Dbp4p is required for release of the U14 snoRNA from preribosomes in Saccharomyces cerevisiae
-
DOI 10.1016/j.molcel.2005.08.022, PII S1097276505015649
-
Kos M, Tollervey D (2005) The putative RNA helicase Dbp4p is required for release of the U14 snoRNA from preribosomes in saccharomyces cerevisiae. Mol Cell 20:53-64. (Pubitemid 41396562)
-
(2005)
Molecular Cell
, vol.20
, Issue.1
, pp. 53-64
-
-
Kos, M.1
Tollervey, D.2
-
30
-
-
33749588453
-
The helicase Has1p is required for snoRNA release from pre-rRNA
-
Liang XH, Fournier MJ (2006) The helicase Has1p is required for snoRNA release from pre-rRNA. Mol Cell Biol 26:7437-7450.
-
(2006)
Mol Cell Biol
, vol.26
, pp. 7437-7450
-
-
Liang, X.H.1
Fournier, M.J.2
-
31
-
-
57049142069
-
Quantitative analysis of snoRNA association with pre-ribosomes and release of snR30 by Rok1 helicase
-
Bohnsack MT, Kos M, Tollervey D (2008) Quantitative analysis of snoRNA association with pre-ribosomes and release of snR30 by Rok1 helicase. EMBO Rep 9(12): 1230-1236.
-
(2008)
EMBO Rep
, vol.9
, Issue.12
, pp. 1230-1236
-
-
Bohnsack, M.T.1
Kos, M.2
Tollervey, D.3
-
32
-
-
33646870148
-
Compositionally and functionally distinct editosomes in Trypanosoma brucei
-
DOI 10.1261/rna.45506
-
Panigrahi AK, et al. (2006) Compositionally and functionally distinct editosomes in Trypanosoma brucei. RNA 12:1038-1049. (Pubitemid 43788122)
-
(2006)
RNA
, vol.12
, Issue.6
, pp. 1038-1049
-
-
Panigrahi, A.K.1
Ernst, N.L.2
Domingo, G.J.3
Fleck, M.4
Salavati, R.5
Stuart, K.D.6
-
33
-
-
0038488182
-
Mass spectrometric analysis of the editosome and other multiprotein complexes in Trypanosoma brucei
-
DOI 10.1016/S1044-0305(03)00126-0
-
Panigrahi AK, Allen TE, Stuart K, Haynes PA, Gygi SP (2003) Mass spectrometric analysis of the editosome and other multiprotein complexes in Trypanosoma brucei. J Am Soc Mass Spectr 14:728-735. (Pubitemid 36870955)
-
(2003)
Journal of the American Society for Mass Spectrometry
, vol.14
, Issue.7
, pp. 728-735
-
-
Panigrahi, A.K.1
Allen, T.E.2
Stuart, K.3
Haynes, P.A.4
Gygi, S.P.5
-
34
-
-
3142725114
-
Identification and characterization of trypanosome RNA-editing complex components
-
Stuart K, Panigrahi AK, Schnaufer A (2004) Identification and characterization of trypanosome RNA-editing complex components. Methods Mol Biol 265:273-291.
-
(2004)
Methods Mol Biol
, vol.265
, pp. 273-291
-
-
Stuart, K.1
Panigrahi, A.K.2
Schnaufer, A.3
-
35
-
-
37549054714
-
RNA editing in Trypanosoma brucei requires three different editosomes
-
Carnes J, Trotter JR, Peltan A, Fleck M, Stuart K (2008) RNA editing in Trypanosoma brucei requires three different editosomes. Mol Cell Biol 28:122-130.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 122-130
-
-
Carnes, J.1
Trotter, J.R.2
Peltan, A.3
Fleck, M.4
Stuart, K.5
-
36
-
-
28044439662
-
A vector series for rapid PCR-mediated C-terminal in situ tagging of Trypanosoma brucei genes
-
DOI 10.1016/j.molbiopara.2005.09.002, PII S0166685105002628
-
Oberholzer M, Morand S, Kunz S, Seebeck T (2006) A vector series for rapid PCR-mediated C-terminal in situ tagging of Trypanosoma brucei genes. Mol Biochem Parasitol 145:117-120. (Pubitemid 41691861)
-
(2006)
Molecular and Biochemical Parasitology
, vol.145
, Issue.1
, pp. 117-120
-
-
Oberholzer, M.1
Morand, S.2
Kunz, S.3
Seebeck, T.4
-
37
-
-
0035164020
-
Association of two novel proteins, TbMP52 and TbMP48, with the Trypanosoma brucei RNA editing complex
-
DOI 10.1128/MCB.21.2.380-389.2001
-
Panigrahi AK, et al. (2001) Association of two novel proteins, TbMP52 and TbMP48, with the Trypanosoma brucei RNA editing complex. Mol Cell Biol 21:380-389. (Pubitemid 32037359)
-
(2001)
Molecular and Cellular Biology
, vol.21
, Issue.2
, pp. 380-389
-
-
Panigrahi, A.K.1
Gygi, S.P.2
Ernst, N.L.3
Igo Jr., R.P.4
Palazzo, S.S.5
Schnaufer, A.6
Weston, D.S.7
Carmean, N.8
Salavati, R.9
Aebersold, R.10
Stuart, K.D.11
|