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Volumn 44, Issue 2, 2011, Pages 354-360

Comparing and combining chunkers of biomedical text

Author keywords

Chunking systems; Evaluation; GENIA corpus; Natural language processing; Shallow parsing; Simple voting scheme

Indexed keywords

CHUNKING SYSTEMS; EVALUATION; GENIA CORPUS; NATURAL LANGUAGE PROCESSING; SHALLOW PARSING; SIMPLE VOTING SCHEME;

EID: 79952756879     PISSN: 15320464     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbi.2010.10.005     Document Type: Article
Times cited : (38)

References (25)
  • 1
    • 0002165449 scopus 로고
    • Parsing by chunks
    • Kluwer Academic Publ, Dordrecht, R.C. Berwick, S.P. Abney, C. Tenny (Eds.)
    • Abney S.P. Parsing by chunks. Principle-based parsing: computation and psycholinguistics 1991, 257-278. Kluwer Academic Publ, Dordrecht. R.C. Berwick, S.P. Abney, C. Tenny (Eds.).
    • (1991) Principle-based parsing: computation and psycholinguistics , pp. 257-278
    • Abney, S.P.1
  • 2
    • 0002711083 scopus 로고
    • Text chunking using transformation-based learning. In: Proceedings of the third ACL workshop on very large corpora. Cambridge, USA
    • Ramshaw LA, Marcus MP. Text chunking using transformation-based learning. In: Proceedings of the third ACL workshop on very large corpora. Cambridge, USA; 1995. p. 82-94.
    • (1995) , pp. 82-94
    • Ramshaw, L.A.1    Marcus, M.P.2
  • 3
    • 16544371560 scopus 로고    scopus 로고
    • A study of biomedical concept identification: MetaMap vs. people. In: Proceedings of the AMIA annual symposium. Washington
    • Pratt W, Yetisgen-Yildiz M. A study of biomedical concept identification: MetaMap vs. people. In: Proceedings of the AMIA annual symposium. Washington; 2003. p. 529-33.
    • (2003) , pp. 529-33
    • Pratt, W.1    Yetisgen-Yildiz, M.2
  • 4
    • 79952764956 scopus 로고    scopus 로고
    • I2b2. i2b2/VA Challenge Evaluation. Concept annotation guidelines. [cited 10.06.10].
    • I2b2. 2010 i2b2/VA Challenge Evaluation. Concept annotation guidelines. [cited 10.06.10]. https://www.i2b2.org/NLP/Relations/assets/Concept%20Annotation%20Guideline.pdf.
    • (2010)
  • 5
    • 79952768084 scopus 로고    scopus 로고
    • Named entity recognition using an HMM-based chunk tagger. In: Proceedings of the 40th annual meeting on association for computational linguistics. Morristown, USA
    • Zhou GD, Su J. Named entity recognition using an HMM-based chunk tagger. In: Proceedings of the 40th annual meeting on association for computational linguistics. Morristown, USA; 2001. p. 473-80.
    • (2001) , pp. 473-80
    • Zhou, G.D.1    Su, J.2
  • 6
    • 0035752429 scopus 로고    scopus 로고
    • Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program. In: Proceedings of the AMIA symposium. Washington
    • Aronson AR. Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program. In: Proceedings of the AMIA symposium. Washington; 2001. p. 17-21.
    • (2001) , pp. 17-21
    • Aronson, A.R.1
  • 7
    • 33846482093 scopus 로고    scopus 로고
    • Mining of relations between proteins over biomedical scientific literature using a deep-linguistic approach
    • Rinaldi F., Schneider G., Kaljurand K., Hess M., Andronis C., Konstandi O., et al. Mining of relations between proteins over biomedical scientific literature using a deep-linguistic approach. Artif Intell Med 2007, 39:127-136.
    • (2007) Artif Intell Med , vol.39 , pp. 127-136
    • Rinaldi, F.1    Schneider, G.2    Kaljurand, K.3    Hess, M.4    Andronis, C.5    Konstandi, O.6
  • 8
    • 79952750738 scopus 로고    scopus 로고
    • Introduction to the CoNLL-2000 shared task: chunking. In: Proceedings of CoNLL-2000and LLL-2000. Lisbon, Portugal
    • Sang EF, Buchholz S. Introduction to the CoNLL-2000 shared task: chunking. In: Proceedings of CoNLL-2000and LLL-2000. Lisbon, Portugal; 2000. p. 127-32.
    • (2000) , pp. 127-32
    • Sang, E.F.1    Buchholz, S.2
  • 9
    • 84945520073 scopus 로고    scopus 로고
    • Use of support vector learning for chunk identification. In: Proceedings of CoNLL-2000 and LLL-2000. Lisbon, Portugal
    • Kudoh T, Matsumoto Y. Use of support vector learning for chunk identification. In: Proceedings of CoNLL-2000 and LLL-2000. Lisbon, Portugal; 2000. p. 142-4.
    • (2000) , pp. 142-4
    • Kudoh, T.1    Matsumoto, Y.2
  • 10
    • 79952753049 scopus 로고    scopus 로고
    • Text chunking by system combination. In: Proceedings of CoNLL-2000 and LLL-2000. Lisbon, Portugal
    • Sang EF. Text chunking by system combination. In: Proceedings of CoNLL-2000 and LLL-2000. Lisbon, Portugal; 2000. p. 151-3.
    • (2000) , pp. 151-3
    • Sang, E.F.1
  • 11
    • 79952744748 scopus 로고    scopus 로고
    • Chunking with WPDV models. In: Proceedings of CoNLL-2000 and LLL-2000. Lisbon, Portugal
    • Van Halteren H. Chunking with WPDV models. In: Proceedings of CoNLL-2000 and LLL-2000. Lisbon, Portugal; 2000. p. 154-6.
    • (2000) , pp. 154-6
    • Van Halteren, H.1
  • 12
    • 79952759987 scopus 로고    scopus 로고
    • Recognizing noun phrases in biomedical text: an evaluation of lab prototypes and commercial chunkers. In: SMBM 2005 - proceedings of the 1st international symposium on semantic mining in biomedicine. Hinxton, England
    • Wermter J, Fluck J, Stroetgen J, Geißler S, Hahn U. Recognizing noun phrases in biomedical text: an evaluation of lab prototypes and commercial chunkers. In: SMBM 2005 - proceedings of the 1st international symposium on semantic mining in biomedicine. Hinxton, England; 2005. p. 25-33.
    • (2005) , pp. 25-33
    • Wermter, J.1    Fluck, J.2    Stroetgen, J.3    Geißler, S.4    Hahn, U.5
  • 13
    • 79952749409 scopus 로고    scopus 로고
    • Syntax annotation for the GENIA corpus. In: Proceedings of the IJCNLP. Jeju Island, Korea
    • Tateisi Y, Yakushiji A, Ohta T, Tsujii J. Syntax annotation for the GENIA corpus. In: Proceedings of the IJCNLP. Jeju Island, Korea; 2005. p. 222-7.
    • (2005) , pp. 222-7
    • Tateisi, Y.1    Yakushiji, A.2    Ohta, T.3    Tsujii, J.4
  • 14
    • 3142696208 scopus 로고    scopus 로고
    • GATE, a general architecture for text engineering
    • Cunningham H. GATE, a general architecture for text engineering. Comput Hum 2002, 36:223-254.
    • (2002) Comput Hum , vol.36 , pp. 223-254
    • Cunningham, H.1
  • 15
    • 79952773721 scopus 로고    scopus 로고
    • et al. Developing language processing components with GATE version 5 (a user guide). University of Sheffield
    • Cunningham H, Maynard D, Bontcheva K, Tablan V, Ursu C, Dimitrov M et al. Developing language processing components with GATE version 5 (a user guide). University of Sheffield; 2009.
    • (2009)
    • Cunningham, H.1    Maynard, D.2    Bontcheva, K.3    Tablan, V.4    Ursu, C.5    Dimitrov, M.6
  • 16
    • 80053254837 scopus 로고    scopus 로고
    • Bidirectional inference with the easiest-first strategy for tagging sequence data. In: Proceedings of the conference on human language technology and empirical methods in natural language processing. Vancouver, Canada
    • Tsuruoka Y. Bidirectional inference with the easiest-first strategy for tagging sequence data. In: Proceedings of the conference on human language technology and empirical methods in natural language processing. Vancouver, Canada; 2005. p. 467-74.
    • (2005) , pp. 467-74
    • Tsuruoka, Y.1
  • 17
    • 0024111049 scopus 로고
    • Barrier word method for detecting molecular biology multiple word terms. In: Proceedings of the 12th annual symposium on computer applications in medical care. Washington, USA
    • Tersmette KWF, Scott AF, Moore GW, Matheson NW, Miller RE. Barrier word method for detecting molecular biology multiple word terms. In: Proceedings of the 12th annual symposium on computer applications in medical care. Washington, USA; 1988. p. 207-21.
    • (1988) , pp. 207-21
    • Tersmette, K.W.F.1    Scott, A.F.2    Moore, G.W.3    Matheson, N.W.4    Miller, R.E.5
  • 18
    • 79952761124 scopus 로고    scopus 로고
    • Automatically adapting an NLP core engine to the biology domain. In: Proceedings of the joint BioLINKBio-ontologies meeting. Fortaleza, Brasil
    • Buyko E, Wermter J, Poprat M, Hahn U. Automatically adapting an NLP core engine to the biology domain. In: Proceedings of the joint BioLINKBio-ontologies meeting. Fortaleza, Brasil; 2006. p. 65-8.
    • (2006) , pp. 65-8
    • Buyko, E.1    Wermter, J.2    Poprat, M.3    Hahn, U.4
  • 19
    • 7444236194 scopus 로고    scopus 로고
    • UIMA: an architectural approach to unstructured information processing in the corporate research environment
    • Ferrucci D., Lally A. UIMA: an architectural approach to unstructured information processing in the corporate research environment. Nat Lang Eng 2004, 10:327-348.
    • (2004) Nat Lang Eng , vol.10 , pp. 327-348
    • Ferrucci, D.1    Lally, A.2
  • 20
    • 79952754157 scopus 로고    scopus 로고
    • Chunking with support vector machines. In: the North American chapter ofthe association for computational linguistics. Pittsburgh, PA, USA
    • Kudo T, Matsumoto Y. Chunking with support vector machines. In: the North American chapter ofthe association for computational linguistics. Pittsburgh, PA, USA; 2001. p. 1-8.
    • (2001) , pp. 1-8
    • Kudo, T.1    Matsumoto, Y.2
  • 21
    • 0348247014 scopus 로고    scopus 로고
    • Memory-based shallow parsing
    • Sang E.F. Memory-based shallow parsing. J Mach Learn Res 2002, 2:559-594.
    • (2002) J Mach Learn Res , vol.2 , pp. 559-594
    • Sang, E.F.1
  • 22
    • 0035748016 scopus 로고    scopus 로고
    • Comparing syntactic complexity in medical and non-medical corpora. In: Proceedings of the AMIA symposium. Washington, USA
    • Campbell DA, Johnson SB. Comparing syntactic complexity in medical and non-medical corpora. In: Proceedings of the AMIA symposium. Washington, USA; 2001. p. 90-2.
    • (2001) , pp. 90-2
    • Campbell, D.A.1    Johnson, S.B.2
  • 23
    • 27244441769 scopus 로고    scopus 로고
    • Really, is medical sublanguage that different? Experimental counter-evidence from tagging medical and newspaper corpora. In: Medinfo 2004 - proceedings of the 11th world congress on medical informatics. San Francisco, USA
    • Wermter J, Hahn U. Really, is medical sublanguage that different? Experimental counter-evidence from tagging medical and newspaper corpora. In: Medinfo 2004 - proceedings of the 11th world congress on medical informatics. San Francisco, USA; 2004. p. 560-4.
    • (2004) , pp. 560-4
    • Wermter, J.1    Hahn, U.2
  • 24
    • 33646159049 scopus 로고    scopus 로고
    • Developing a corpus of clinical notes manually annotated for part-of-speech
    • Pakhomov S.V., Coden A., Chute C.G. Developing a corpus of clinical notes manually annotated for part-of-speech. Int J Med Inform 2006, 75:418-429.
    • (2006) Int J Med Inform , vol.75 , pp. 418-429
    • Pakhomov, S.V.1    Coden, A.2    Chute, C.G.3
  • 25
    • 34548505264 scopus 로고    scopus 로고
    • Heuristic sample selection to minimize reference standard training set for a part-of-speech tagger
    • Liu K., Chapman W., Hwa R., Crowley R.S. Heuristic sample selection to minimize reference standard training set for a part-of-speech tagger. J Am Med Inform Assoc 2007, 14:641-650.
    • (2007) J Am Med Inform Assoc , vol.14 , pp. 641-650
    • Liu, K.1    Chapman, W.2    Hwa, R.3    Crowley, R.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.