Pattern of genetic variability of Solanum habrochaites in its natural area of distribution

Genetic Resources and Crop Evolution

Volumn 58, Issue 3, 2011, Pages 347-360

  Sifres, Alicia ^a   Blanca, José ^a   Nuez, Fernando ^a  

^a UNIVERSITAT POLITÈCNICA DE VALÈNCIA   (Spain)

Author keywords

AFLP; Genetic variability; Geographic differentiation; Solanum habrochaites; SSR

Indexed keywords

BREEDING; COLD TOLERANCE; DICOTYLEDON; GENE; GENETIC VARIATION; GEOGRAPHICAL DISTRIBUTION; HETEROZYGOSITY; PRINCIPAL COMPONENT ANALYSIS;

ECUADOR; PERU;

LYCOPERSICON ESCULENTUM; LYCOPERSICON HIRSUTUM; SOLANUM;

EID: 79952696652     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-010-9578-0     Document Type: Article

References (45)

1. Baker HG (1955) Self-compatibility and establishment after long-distance dispersal. Evolution 9: 347-348.
2. Belkhir K, Borsa P, Chikhi L, Rafaste N, Bonhomme T (1996) Genetix 4. 04 Logiciel sours Windous TM pour la genetique des populations. Laboratoire Génome, populations, interactions, Université de Montpellier II, Montpellier. Website http://www. genetix. univ-montp2. fr/genetix/genetix. htm.
3. Benham J, Jeung JU, Jasieniuk M, Kanazin V, Blake T (1999) Genographer: a graphical tool for automated fluorescent AFLP and microsatellite analysis. Department of Plant Science, Montana State University, Bozeman.
4. Bernacchi D, Beck-Bunn T, Eshed Y, Lopez J, Petiard V, Uhlig J, Zamir D, Tanksley S (1998) Advanced backcross QTL analysis in tomato. I. Identification of QTLs for traits of agronomic importance from Lycopersicon hirsutum. Theor Appl Genet 97: 381-397.
5. Bornet B, Goraguer F, Joly G, Brachard M (2002) Genetic diversity in European and Argentinian cultivated potatoes (Solanumtuberosum subsp. tuberosum) detected by inter-simple sequence repeats (ISSRs). Genome 45: 481-484.
6. Bouxin G (2005) Ginkgo, a multivariate analysis package. J Veg Sci 16: 355-359.
7. Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis: models and estimation procedures. Evolution 32: 550-570.
8. Coulibaly S, Pasquet R, Papa R, Gepts P (2002) AFLP analysis of the phenetic organization and genetic diversity of Vigna unguiculata L. Walp. reveals extensive gene flow between wild and domesticated types. Theor Appl Genet 104: 358-366.
9. Ercolano MR, Sebastiano A, Monti L, Frusciante L, Barone A (2005) Molecular characterization of Solanum habrochaites accessions. J Genet Breed 59: 15-20.
10. Excoffier L, Laval G, Schneider S (2005) Arlequin (version 3. 0): an integrated software package for population genetics data analysis. Evol Bioinform Online 1: 47-50.
11. Felsenstein J (1993) PHYLIP (Phylogeny Inference Package) v3. 69. Department of Genome Sciences and Department of Biology. University of Washington. Washington. EEUU. Website http://www. evolution. genetics. washington. edu/phylip. html.
12. Ferriol M, Pico B, Nuez F (2003) Genetic diversity of a germplasm collection of Cucurbita pepo using SRAP and AFLP markers. Theor Appl Genet 107: 271-282.
13. Foolad MR, Merk HL, Ashrafi H (2008) Genetics, genomics and breeding of late blight and early blight resistance in tomato. Crit Rev Plant Sci 27: 75-107.
14. Gower JC (1966) Some distance properties of latent roots and vector methods used in multivariate analysis. Biometrika 53: 325-338.
15. Guo ZH, Weston PA, Snyder JC (1993) Repellency to 2-spotted spider-mite, Tetranychus urticae Koch, as related to leaf surface-chemistry of Lycopersicon hirsutum accessions. J Chem Ecol 19: 2965-2979.
16. Kabelka E, Franchino B, Francis DM (2002) Two loci from Lycopersicon hirsutum LA407 confer resistance to strains of Clavibacter michiganensis subsp. michiganensis. Phytopathology 92: 504-510.
17. Langella O (2002) Populations 1. 2. 28, Population genetic software. CNRS Website http://www. bioinformatics. org/~tryphon/populations/.
18. Leite G, Picanco M, Guedes R, Zanuncio J (2001) Role of plant age in the resistance of Lycopersicon hirsutum f. glabratum to the tomato leafminer Tuta absoluta (Lepidoptera: Gelechiidae). Sci Hortic 89: 103-113.
19. Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27: 209-220.
20. Momotaz A, Scott JW, Schuster DJ (2005) Searching for silverleaf whitefly and begomovirus resistance genes from Lycopersicon hirsutum accession LA1777. Acta Hort 695: 417-422.
21. Monforte A, Tanksley S (2000) Development of a set of near isogenic and backcross recombinant inbred lines containing most of the Lycopersicon hirsutum genome in a L. esculentum genetic background: a tool for gene mapping and gene discovery. Genome 43: 803-813.
22. Müller CH (1940) A revision of the genus Lycopersicon. United States Department of Agriculture. Misc Publ No 382.
23. Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70: 3321-3323.
24. Nuez F, Prohens J, Blanca JM (2004) Relationships origin, and diversity of Galapagos tomatoes: implications for the conservation of natural populations. Am J Bot 91: 86-99.
25. Nuez F, Diez MJ, Valcarcel JV, Cebolla-Cornejo J, Perez A, Soler S, Rosello S, Adalid A, Galiana L, Sifres A, Pico B, Blanca JM, Frutos R (2008) Genetic resources of Lycopersicon at the institute for the conservation and improvement of the agrodiversity. Acta Hortic 789: 293-297.
26. Peralta IE, Spooner DM, Knapp S (2008) The taxonomy of tomatoes: a revision of wild tomatoes (Solanum section Lycopersicon) and their outgroup relatives in sections Juglandifolium and Lycopersicoides. Syst Bot Monogr 84: 1-186 + 3 plates.
27. Phillips N, Larson S, Drost D (2008) Detection of genetic variation in wild populations of three Allium species using amplified fragment length polymorphisms. HortScience 43: 637-643.
28. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959. http://www. pritch. bsd. uchicago. edu/structure. html.
29. Qian H, Ricklefs RE, White PS (2005) Beta diversity of angiosperms in temperate floras of eastern Asia and eastern North America. Ecol Lett 8: 15-22.
30. Rick CM (1982) The potential of exotic germplasm for tomato improvement. In: Vasil IK, Scowcroft WR, Frey KJ (eds) Plant improvement and somatic cell genetics. Academic Press Inc., New York, pp 1-28.
31. Rick CM, Fobes JF, Holle M (1977) Genetic variation in Lycopersicon pimpinellifolium: evidence of evolutionary change in mating systems. Plant Syst Evol 127: 139-170.
32. Rick CM, Fobes JF, Tanksley SD (1979) Evolution of mating systems in Lycopersicon hirsutum as deduced from genetic variation in electrophoretic and morphological characters. Plant Syst Evol 132: 279-298.
33. Sacks E, St. Clair D (1998) Variation among seven genotypes of Lycopersicon esculentum and 36 accessions of L. hirsutum for interspecific crossability. Euphytica 101: 185-191.
34. Sifres A (2003) Variabilidad de Lycopersicon spp. en su área de distribución natural influenciada por el fenómeno climatológico de "El Niño". PhD Thesis, Universidad Politécnica de Valencia, Valencia, Spain.
35. Sifres A, Pico B, Blanca J, De Frutos R, Nuez F (2007) Genetic structure of Lycopersicon pimpinellifolium (Solanaceae) populations collected after the ENSO event of 1997-1998. Genet Resour Crop Evol 54: 359-377.
36. Smulders MJM, Bredemeijer G, Rus-Kortekaas W, Arens P, Vosman B (1997) Use of short microsatellites from database sequences to generate polymorphisms among Lycopersicon esculentum cultivars and accessions of other Lycopersicon species. Theor Appl Genet 97: 264-272.
37. Snyder JC, Guo ZH, Thacker R, Goodman J, Stpyrek J (1993) 2, 3-Dihydrofarnesoic acid, a unique terpene from trichomes of Lycopersicon hirsutum, repels spider-mites. J Chem Ecol 19: 2981-2997.
38. Vavilov NI (1927) Geographical regularities in the distribution of the genes of cultivated plants. Bull Appl Bot Genet Plant Breed 17: 411-428.
39. Vidavsky F, Czosnek H (1998) Tomato breeding lines resistant and tolerant to tomato yellow leaf curl virus issued from Lycopersicon hirsutum. Phytopathology 88: 910-914.
40. Weigend M (2002) Observations on the biogeography of the Amotape-Huancabamba Zone in northern Peru. Bot Rev 68: 38-54.
41. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
42. Yeh FC, Yang RC, Boyle TBJ, Ye ZH, Mao JX (1997) POPGENE, the user-friendly shareware for population genetic analysis. Molecular Biology and Biotechnology Centre, University of Alberta, Alberta. http://www. ualberta. ca/~fyeh/index. htm.
43. Young KR, Reynel C (1997) Huancabamba region, Perú and Ecuador. In: Davis SD, Heywood VH, Herrera-MacBryde O, Villa-Lobos J, Hamilton AC (eds) Centres of plant diversity: a guide and strategy for their conservation, 3: North America, Middle America, South America, Caribbean Island. IUCN, Cambridge.
44. Zuriaga E, Blanca J, Nuez F (2009a) Classification and phylogenetic relationships in Solanum section Lycopersicon based on AFLP and two nuclear gene sequences. Genet Resour Crop Evol 56: 663-678.
45. Zuriaga E, Blanca J, Cordero L, Sifres A, Blas-Cerdan W, Morales R (2009b) Genetic and bioclimatic variation in Solanum pimpinellifolium. Genet Resour Crop Evol 56: 39-51.