-
1
-
-
0034687794
-
Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays
-
Tenenbaum, S. A., Carson, C. C., Lager, P. J., Keene, J. D. (2000) Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays. Proc Natl Acad Sci USA 97, 14085–14090.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 14085-14090
-
-
Tenenbaum, S.A.1
Carson, C.C.2
Lager, P.J.3
Keene, J.D.4
-
2
-
-
0035912793
-
Ribonucleoprotein infrastructure regulating the flow of genetic information between the genome and the proteome
-
Keene, J. D. (2001) Ribonucleoprotein infrastructure regulating the flow of genetic information between the genome and the proteome. Proc Natl Acad Sci USA 98, 7018–7024.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 7018-7024
-
-
Keene, J.D.1
-
3
-
-
0036289532
-
Eukaryotic mRNPs may represent post- transcriptional operons
-
Keene, J. D., Tenenbaum, S. A. (2002) Eukaryotic mRNPs may represent post- transcriptional operons. Mol Cell 9, 1161–1167.
-
(2002)
Mol Cell
, vol.9
, pp. 1161-1167
-
-
Keene, J.D.1
Tenenbaum, S.A.2
-
4
-
-
34250735674
-
RNA regulons: Coordination of post-transcriptional events
-
Keene, J. D. (2007) RNA regulons: coordination of post-transcriptional events. Nat Rev Genet 8, 533–543.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 533-543
-
-
Keene, J.D.1
-
5
-
-
60049097909
-
The ribonome: A dominant force in coordinating gene expression
-
Mansfield, K. D., Keene, J. D. (2009) The ribonome: a dominant force in coordinating gene expression. Biol Cell 101, 169–181.
-
(2009)
Biol Cell
, vol.101
, pp. 169-181
-
-
Mansfield, K.D.1
Keene, J.D.2
-
6
-
-
60549114880
-
Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
-
Neil, H., Malabat, C., ubenton-Carafa, Y., Xu, Z., Steinmetz, L. M., Jacquier, A. (2009) Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature 457, 1038–1042.
-
(2009)
Nature
, vol.457
, pp. 1038-1042
-
-
Neil, H.1
Malabat, C.2
Ubenton-Carafa, Y.3
Xu, Z.4
Steinmetz, L.M.5
Jacquier, A.6
-
7
-
-
57849105533
-
The antisense transcriptomes of human cells
-
He, Y., Vogelstein, B., Velculescu, V. E., Papadopoulos, N., Kinzler, K. W. (2008) The antisense transcriptomes of human cells. Science 322, 1855–1857.
-
(2008)
Science
, vol.322
, pp. 1855-1857
-
-
He, Y.1
Vogelstein, B.2
Velculescu, V.E.3
Papadopoulos, N.4
Kinzler, K.W.5
-
8
-
-
34248650427
-
-
Oliver, B., Parisi, M., Clark, D. (2002) Gene expression neighborhoods. J Biol 1, 4.
-
(2002)
Gene Expression Neighborhoods. J Biol
, vol.1
, pp. 4
-
-
Oliver, B.1
Parisi, M.2
Clark, D.3
-
9
-
-
60549085054
-
Molecular biology: The long and short of RNAs
-
Carninci, P. (2009) Molecular biology: the long and short of RNAs. Nature 457, 974–975.
-
(2009)
Nature
, vol.457
, pp. 974-975
-
-
Carninci, P.1
-
10
-
-
57849140661
-
Divergent transcription from active promoters
-
Seila, A. C., Calabrese, J. M., Levine, S. S., Yeo, G. W., Rahl, P. B., Flynn, R. A., Young, R. A., Sharp, P. A. (2008) Divergent transcription from active promoters. Science 322, 1849–1851.
-
(2008)
Science
, vol.322
, pp. 1849-1851
-
-
Seila, A.C.1
Calabrese, J.M.2
Levine, S.S.3
Yeo, G.W.4
Rahl, P.B.5
Flynn, R.A.6
Young, R.A.7
Sharp, P.A.8
-
11
-
-
0037041395
-
An extensive network of coupling among gene expression machines
-
Maniatis, T., Reed, R. (2002) An extensive network of coupling among gene expression machines. Nature 416, 499–506.
-
(2002)
Nature
, vol.416
, pp. 499-506
-
-
Maniatis, T.1
Reed, R.2
-
12
-
-
60149110358
-
Pre-mRNA processing reaches back to transcription and ahead to translation
-
Moore, M. J., Proudfoot, N. J. (2009) Pre-mRNA processing reaches back to transcription and ahead to translation. Cell 136, 688–700.
-
(2009)
Cell
, vol.136
, pp. 688-700
-
-
Moore, M.J.1
Proudfoot, N.J.2
-
13
-
-
34250330777
-
What is a gene, post-ENCODE? History and updated definition
-
Gerstein, M. B., Bruce, C., Rozowsky, J. S., Zheng, D., Du, J., Korbel, J. O., Emanuelsson, O., Zhang, Z. D., Weissman, S., Snyder, M. (2007) What is a gene, post-ENCODE? History and updated definition. Genome Res 17, 669–681.
-
(2007)
Genome Res
, vol.17
, pp. 669-681
-
-
Gerstein, M.B.1
Bruce, C.2
Rozowsky, J.S.3
Zheng, D.4
Du, J.5
Korbel, J.O.6
Emanuelsson, O.7
Zhang, Z.D.8
Weissman, S.9
Snyder, M.10
-
14
-
-
56749098074
-
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
-
Pan, Q., Shai, O., Lee, L. J., Frey, B. J., Blencowe, B. J. (2008) Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat Genet 40, 1413–1415.
-
(2008)
Nat Genet
, vol.40
, pp. 1413-1415
-
-
Pan, Q.1
Shai, O.2
Lee, L.J.3
Frey, B.J.4
Blencowe, B.J.5
-
15
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang, E. T., Sandberg, R., Luo, S., Khreb-tukova, I., Zhang, L., Mayr, C., Kingsmore, S. F., Schroth, G. P., Burge, C. B. (2008) Alternative isoform regulation in human tissue transcriptomes. Nature 456, 470–476.
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khreb-Tukova, I.4
Zhang, L.5
Mayr, C.6
Kingsmore, S.F.7
Schroth, G.P.8
Burge, C.B.9
-
16
-
-
66049104920
-
′ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development
-
′ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development. Proc Natl Acad Sci USA 106, 7028–7033.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 7028-7033
-
-
Ji, Z.1
Lee, J.Y.2
Pan, Z.3
Jiang, B.4
Tian, B.5
-
18
-
-
24644502657
-
From birth to death: The complex lives of eukaryotic mRNAs
-
Moore, M. J. (2005) From birth to death: the complex lives of eukaryotic mRNAs. Science 309, 1514–1518.
-
(2005)
Science
, vol.309
, pp. 1514-1518
-
-
Moore, M.J.1
-
19
-
-
33645788870
-
Genome-scale identification of membrane-associated human mRNAs
-
Diehn, M., Bhattacharya, R., Botstein, D., Brown, P. O. (2006) Genome-scale identification of membrane-associated human mRNAs. PLoS Genet 2, e11.
-
(2006)
Plos Genet
, vol.2
, pp. e11
-
-
Diehn, M.1
Bhattacharya, R.2
Botstein, D.3
Brown, P.O.4
-
20
-
-
40449138572
-
Post-transcriptional gene regulation: From genome-wide studies to principles
-
Halbeisen, R. E., Galgano, A., Scherrer, T., Gerber, A. P. (2008) Post-transcriptional gene regulation: from genome-wide studies to principles. Cell Mol Life Sci 65, 798–813.
-
(2008)
Cell Mol Life Sci
, vol.65
, pp. 798-813
-
-
Halbeisen, R.E.1
Galgano, A.2
Scherrer, T.3
Gerber, A.P.4
-
21
-
-
18344371641
-
Moving messages: The intracellular localization of mRNAs
-
St Johnston, D. (2005) Moving messages: the intracellular localization of mRNAs. Nat Rev Mol Cell Biol 6, 363–375.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 363-375
-
-
St Johnston, D.1
-
22
-
-
34548535363
-
Cap-independent translation is required for starvation-induced differentiation in yeast
-
Gilbert, W. V., Zhou, K., Butler, T. K., Doudna, J. A. (2007) Cap-independent translation is required for starvation-induced differentiation in yeast. Science 317, 1224–1227.
-
(2007)
Science
, vol.317
, pp. 1224-1227
-
-
Gilbert, W.V.1
Zhou, K.2
Butler, T.K.3
Doudna, J.A.4
-
23
-
-
62549134121
-
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
-
Ingolia, N. T., Ghaemmaghami, S., Newman, J. R., Weissman, J. S. (2009) Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324, 218–223.
-
(2009)
Science
, vol.324
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.3
Weissman, J.S.4
-
24
-
-
33845275018
-
RIP-Chip: The isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts
-
Keene, J. D., Komisarow, J. M., Frieders-dorf, M. B. (2006) RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts. Nat Protoc 1, 302–307.
-
(2006)
Nat Protoc
, vol.1
, pp. 302-307
-
-
Keene, J.D.1
Komisarow, J.M.2
Frieders-Dorf, M.B.3
-
25
-
-
42949149690
-
Advances in RIP-chip analysis: RNA-binding protein immunoprecipitation-microarray profiling
-
Baroni, T. E., Chittur, S. V., George, A. D., Tenenbaum, S. A. (2008) Advances in RIP-chip analysis: RNA-binding protein immunoprecipitation-microarray profiling. Methods Mol Biol 419, 93–108.
-
(2008)
Methods Mol Biol
, vol.419
, pp. 93-108
-
-
Baroni, T.E.1
Chittur, S.V.2
George, A.D.3
Tenenbaum, S.A.4
-
26
-
-
20144368638
-
Integrated genomic and proteomic analyses of gene expression in Mammalian cells
-
Tian, Q., Stepaniants, S. B., Mao, M., Weng, L., Feetham, M. C., Doyle, M. J., Yi, E. C., Dai, H., Thorsson, V., Eng, J., et al. (2004) Integrated genomic and proteomic analyses of gene expression in Mammalian cells. Mol Cell Proteomics 3, 960–969.
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 960-969
-
-
Tian, Q.1
Stepaniants, S.B.2
Mao, M.3
Weng, L.4
Feetham, M.C.5
Doyle, M.J.6
Yi, E.C.7
Dai, H.8
Thorsson, V.9
Eng, J.10
-
27
-
-
34249316905
-
RNA-binding proteins: Modular design for efficient function
-
Lunde, B. M., Moore, C., Varani, G. (2007) RNA-binding proteins: modular design for efficient function. Nat Rev Mol Cell Biol 8, 479–490.
-
(2007)
Nat Rev Mol Cell Biol
, vol.8
, pp. 479-490
-
-
Lunde, B.M.1
Moore, C.2
Varani, G.3
-
28
-
-
19344365947
-
Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast
-
Gerber, A. P., Herschlag, D., Brown, P. O. (2004) Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast. PLoS Biol 2, E79.
-
(2004)
Plos Biol
, vol.2
, pp. E79
-
-
Gerber, A.P.1
Herschlag, D.2
Brown, P.O.3
-
29
-
-
48449096068
-
Yeast mitochondrial biogenesis: A role for the PUF RNA-binding protein Puf3p in mRNA localization
-
Saint-Georges, Y., Garcia, M., Delaveau, T., Jourdren, L., Le, C. S., Lemoine, S., Tanty, V., Devaux, F., Jacq, C. (2008) Yeast mitochondrial biogenesis: a role for the PUF RNA-binding protein Puf3p in mRNA localization. PLoS One 3, e2293.
-
(2008)
Plos One
, vol.3
-
-
Saint-Georges, Y.1
Garcia, M.2
Delaveau, T.3
Jourdren, L.4
Le, C.S.5
Lemoine, S.6
Tanty, V.7
Devaux, F.8
Jacq, C.9
-
30
-
-
33749262968
-
Genome-wide analysis of mRNAs bound to the histone stem-loop binding protein
-
Townley-Tilson, W. H., Pendergrass, S. A., Marzluff, W. F., Whitfield, M. L. (2006) Genome-wide analysis of mRNAs bound to the histone stem-loop binding protein. RNA 12, 1853–1867.
-
(2006)
RNA
, vol.12
, pp. 1853-1867
-
-
Townley-Tilson, W.H.1
Pendergrass, S.A.2
Marzluff, W.F.3
Whitfield, M.L.4
-
31
-
-
31144448042
-
AU-rich elements and associated factors: Are there unifying principles?
-
Barreau, C., Paillard, L., Osborne, H. B. (2005) AU-rich elements and associated factors: are there unifying principles? Nucleic Acids Res 33, 7138–7150.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 7138-7150
-
-
Barreau, C.1
Paillard, L.2
Osborne, H.B.3
|