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Volumn 122, Issue 4, 2011, Pages 759-769

Dissection of QTL effects for root traits using a chromosome arm-specific mapping population in bread wheat

Author keywords

[No Author keywords available]

Indexed keywords

BREAD WHEAT; CROSSOVER EVENTS; EMPIRICAL BAYES METHOD; EPISTATIC EFFECTS; EPISTATIC INTERACTIONS; ERROR VARIANCE; HIGH RESOLUTION; INTERACTION EFFECT; MAIN EFFECT; MAPPING POPULATIONS; MEAN VALUES; QTL ANALYSIS; QTL EFFECTS; ROOT LENGTH; ROOT WEIGHT;

EID: 79952449828     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-010-1484-5     Document Type: Article
Times cited : (85)

References (63)
  • 1
    • 0242360752 scopus 로고    scopus 로고
    • Chromosome substitution strains: Some quantitative considerations for genome scans and fine mapping
    • Belknap JK (2003) Chromosome substitution strains: some quantitative considerations for genome scans and fine mapping. Mamm Genome 14: 723-732.
    • (2003) Mamm Genome , vol.14 , pp. 723-732
    • Belknap, J.K.1
  • 4
    • 24644490562 scopus 로고    scopus 로고
    • Simultaneous mapping of epistatic QTL in DU6i × DBA/2 mice
    • Carlborg O, Brockmann GA, Haley CS (2005) Simultaneous mapping of epistatic QTL in DU6i × DBA/2 mice. Mamm Genome 16: 481-494.
    • (2005) Mamm Genome , vol.16 , pp. 481-494
    • Carlborg, O.1    Brockmann, G.A.2    Haley, C.S.3
  • 6
    • 0028151261 scopus 로고
    • Empirical threshold values for quantitative trait mapping
    • Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
    • (1994) Genetics , vol.138 , pp. 963-971
    • Churchill, G.A.1    Doerge, R.W.2
  • 7
    • 34250441787 scopus 로고
    • Simulation of cyclic single cross selection
    • Ehdaie B, Cress CE (1973) Simulation of cyclic single cross selection. Theor Appl Genet 43: 374-380.
    • (1973) Theor Appl Genet , vol.43 , pp. 374-380
    • Ehdaie, B.1    Cress, C.E.2
  • 8
    • 33847794287 scopus 로고    scopus 로고
    • Determination of a chromosome segment influencing rooting ability in wheat-rye 1BS-1RS recombinant lines
    • Ehdaie B, Waines JG (2006) Determination of a chromosome segment influencing rooting ability in wheat-rye 1BS-1RS recombinant lines. J Genet Breed 60: 71-76.
    • (2006) J Genet Breed , vol.60 , pp. 71-76
    • Ehdaie, B.1    Waines, J.G.2
  • 9
    • 69249236105 scopus 로고    scopus 로고
    • Larger root system increases water-nitrogen uptake and grain yield in bread wheat
    • R. Appels (Ed.), Brisbane: Sydney University Press
    • Ehdaie B, Waines JG (2008) Larger root system increases water-nitrogen uptake and grain yield in bread wheat. In: Appels R et al (eds) 11th international wheat genetics symposium 2008. Sydney University Press, Brisbane, p 659.
    • (2008) 11th International Wheat Genetics Symposium 2008 , pp. 659
    • Ehdaie, B.1    Waines, J.G.2
  • 10
    • 0034779358 scopus 로고    scopus 로고
    • Inheritance of root and shoot biomass in a bread wheat cross
    • Ehdaie B, Barnhart D, Waines JG (2001) Inheritance of root and shoot biomass in a bread wheat cross. J Genet Breed 55: 1-10.
    • (2001) J Genet Breed , vol.55 , pp. 1-10
    • Ehdaie, B.1    Barnhart, D.2    Waines, J.G.3
  • 11
    • 0037342668 scopus 로고    scopus 로고
    • Root biomass, water-use efficiency, and performance of wheat-rye translocations of chromosomes 1 and 2 in spring bread wheat 'Pavon
    • Ehdaie B, Whitkus RW, Waines JG (2003) Root biomass, water-use efficiency, and performance of wheat-rye translocations of chromosomes 1 and 2 in spring bread wheat 'Pavon'. Crop Sci 43: 710-717.
    • (2003) Crop Sci , vol.43 , pp. 710-717
    • Ehdaie, B.1    Whitkus, R.W.2    Waines, J.G.3
  • 12
    • 0003644181 scopus 로고
    • 2nd edn., New York: Wiley
    • Esau K (1965) Plant anatomy, 2nd edn. Wiley, New York.
    • (1965) Plant Anatomy
    • Esau, K.1
  • 13
    • 34249770724 scopus 로고
    • A genomic library of Lycopersicon pennelli in L. esculentum: A tool for fine mapping of genes
    • Eshed Y, Zamir D (1994) A genomic library of Lycopersicon pennelli in L. esculentum: a tool for fine mapping of genes. Euphytica 79: 175-179.
    • (1994) Euphytica , vol.79 , pp. 175-179
    • Eshed, Y.1    Zamir, D.2
  • 15
    • 84971185409 scopus 로고
    • The correlations between relatives on the supposition of Mendelian inheritance
    • Fisher RA (1918) The correlations between relatives on the supposition of Mendelian inheritance. Trans R Soc Edinb 52: 399-433.
    • (1918) Trans R Soc Edinb , vol.52 , pp. 399-433
    • Fisher, R.A.1
  • 16
    • 0001729472 scopus 로고    scopus 로고
    • Calibration and empirical Bayes variable selection
    • George EI, Foster DP (2000) Calibration and empirical Bayes variable selection. Biometrika 87: 731-747.
    • (2000) Biometrika , vol.87 , pp. 731-747
    • George, E.I.1    Foster, D.P.2
  • 17
    • 33644756611 scopus 로고    scopus 로고
    • Identification of quantitative trait loci that regulate Arabidopsis root system size and plasticity
    • Gerald JNF, Lehti-Shiu MD, Ingram PA, Deak KI, Biesiada T, Malamy JE (2006) Identification of quantitative trait loci that regulate Arabidopsis root system size and plasticity. Genetics 172: 485-498.
    • (2006) Genetics , vol.172 , pp. 485-498
    • Gerald, J.N.F.1    Lehti-Shiu, M.D.2    Ingram, P.A.3    Deak, K.I.4    Biesiada, T.5    Malamy, J.E.6
  • 18
    • 0033949025 scopus 로고    scopus 로고
    • Quantitative trait loci and gene interaction: The quantitative genetics of metapopulations
    • Goodnight CJ (2000) Quantitative trait loci and gene interaction: the quantitative genetics of metapopulations. Heredity 84: 587-598.
    • (2000) Heredity , vol.84 , pp. 587-598
    • Goodnight, C.J.1
  • 19
    • 58149267422 scopus 로고    scopus 로고
    • Comparative mapping of DNA sequences in rye (Secale cereale L.) in relation to the rice genome
    • Hackauf B, Rudd S, Voort JRvd, Miedaner T, Wehling P (2009) Comparative mapping of DNA sequences in rye (Secale cereale L.) in relation to the rice genome. Theor Appl Genet 118: 371-384.
    • (2009) Theor Appl Genet , vol.118 , pp. 371-384
    • Hackauf, B.1    Rudd, S.2    Voort, J.3    Miedaner, T.4    Wehling, P.5
  • 20
    • 0014099014 scopus 로고
    • Maximum-likelihood estimation for mixed analysis of variance model
    • Hartley HO, Rao JNK (1967) Maximum-likelihood estimation for mixed analysis of variance model. Biometrika 54: 93-108.
    • (1967) Biometrika , vol.54 , pp. 93-108
    • Hartley, H.O.1    Rao, J.N.K.2
  • 21
    • 2442417788 scopus 로고    scopus 로고
    • Epistasis and plant breeding
    • Holland JB (2001) Epistasis and plant breeding. Plant Breed Rev 21: 27-92.
    • (2001) Plant Breed Rev , vol.21 , pp. 27-92
    • Holland, J.B.1
  • 22
    • 78751650552 scopus 로고    scopus 로고
    • PROC QTL-a SAS procedure for mapping quantitative trait loci
    • Hu Z, Xu S (2009) PROC QTL-a SAS procedure for mapping quantitative trait loci. Int J Plant Genomics 2009: 1-3.
    • (2009) Int J Plant Genomics , vol.2009 , pp. 1-3
    • Hu, Z.1    Xu, S.2
  • 23
    • 0037342502 scopus 로고    scopus 로고
    • Selection dynamics and limits under additive × additive epistatic gene action
    • Jannink JL (2003) Selection dynamics and limits under additive × additive epistatic gene action. Crop Sci 43: 489-497.
    • (2003) Crop Sci , vol.43 , pp. 489-497
    • Jannink, J.L.1
  • 24
    • 0036199370 scopus 로고    scopus 로고
    • Modeling epistasis of quantitative trait loci using Cockerham's model
    • Kao C, Zeng Z (2002) Modeling epistasis of quantitative trait loci using Cockerham's model. Genetics 160: 1243-1261.
    • (2002) Genetics , vol.160 , pp. 1243-1261
    • Kao, C.1    Zeng, Z.2
  • 26
    • 0242269233 scopus 로고    scopus 로고
    • Drought tolerance studies on wheat/rye disomic chromosome addition lines
    • Koszegi B, Farshadfar E, Vagujfalvi A, Sutka J (1996) Drought tolerance studies on wheat/rye disomic chromosome addition lines. Acta Agron Hung 44: 121-126.
    • (1996) Acta Agron Hung , vol.44 , pp. 121-126
    • Koszegi, B.1    Farshadfar, E.2    Vagujfalvi, A.3    Sutka, J.4
  • 28
    • 0024508964 scopus 로고
    • Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps
    • Lander ES, Botstein D (1989) Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121: 185-199.
    • (1989) Genetics , vol.121 , pp. 185-199
    • Lander, E.S.1    Botstein, D.2
  • 29
    • 0002304553 scopus 로고
    • Aneuploidy in wheat and its uses in genetic analysis
    • F. G. H. Lupton (Ed.), London: Chapman & Hall Ltd
    • Law CN, Snape JW, Worland AJ (1987) Aneuploidy in wheat and its uses in genetic analysis. In: Lupton FGH (ed) Wheat breeding-its scientific basis. Chapman & Hall Ltd, London, pp 71-108.
    • (1987) Wheat Breeding-Its Scientific Basis , pp. 71-108
    • Law, C.N.1    Snape, J.W.2    Worland, A.J.3
  • 30
    • 0028890852 scopus 로고
    • Identification of QTL for drought responses in maize and their use in testing causal relationships between traits
    • Lebreton C, Lazicjancic V, Steed A, Pekic S, Quarrie SA (1995) Identification of QTL for drought responses in maize and their use in testing causal relationships between traits. J Exp Bot 46: 853-865.
    • (1995) J Exp Bot , vol.46 , pp. 853-865
    • Lebreton, C.1    Lazicjancic, V.2    Steed, A.3    Pekic, S.4    Quarrie, S.A.5
  • 32
    • 0034003877 scopus 로고    scopus 로고
    • Manipulation of the 1RS.1BL translocation in wheat by induced homoeologous recombination
    • Lukaszewski AJ (2000) Manipulation of the 1RS. 1BL translocation in wheat by induced homoeologous recombination. Crop Sci 40: 216-225.
    • (2000) Crop Sci , vol.40 , pp. 216-225
    • Lukaszewski, A.J.1
  • 34
    • 33749149233 scopus 로고    scopus 로고
    • Assessing the importance of genotype x environment interaction for root traits in rice using a mapping population. I. A soil-filled box screen
    • MacMillan K, Emrich K, Piepho HP, Mullins CE, Price AH (2006) Assessing the importance of genotype x environment interaction for root traits in rice using a mapping population. I. A soil-filled box screen. Theor Appl Genet 113: 977-986.
    • (2006) Theor Appl Genet , vol.113 , pp. 977-986
    • Macmillan, K.1    Emrich, K.2    Piepho, H.P.3    Mullins, C.E.4    Price, A.H.5
  • 35
    • 4544333433 scopus 로고    scopus 로고
    • Root architecture-wheat as a model plant
    • Y. Waisel, A. Eshel, and U. Kafkafi (Eds.), New York: Marcel Dekker Inc
    • Manske GGB, Vlek PLG (2002) Root architecture-wheat as a model plant. In: Waisel Y, Eshel A, Kafkafi U (eds) Plant roots: the hidden half. Marcel Dekker Inc, New York, pp 249-259.
    • (2002) Plant Roots: The Hidden Half , pp. 249-259
    • Manske, G.G.B.1    Vlek, P.L.G.2
  • 38
    • 0242287275 scopus 로고    scopus 로고
    • Locating QTLs controlling drought tolerance criteria in rye using disomic addition lines
    • Mohammadi R, Farshadfar E, Aghaee-Sarbarzeh M, Sutka J (2003) Locating QTLs controlling drought tolerance criteria in rye using disomic addition lines. Cereal Res Commun 31: 257-264.
    • (2003) Cereal Res Commun , vol.31 , pp. 257-264
    • Mohammadi, R.1    Farshadfar, E.2    Aghaee-Sarbarzeh, M.3    Sutka, J.4
  • 39
    • 0034054962 scopus 로고    scopus 로고
    • Analysing complex genetic traits with chromosome substitution strains
    • Nadeau JH, Singer JB, Matin A, Lander ES (2000) Analysing complex genetic traits with chromosome substitution strains. Nat Genet 24: 221-225.
    • (2000) Nat Genet , vol.24 , pp. 221-225
    • Nadeau, J.H.1    Singer, J.B.2    Matin, A.3    Lander, E.S.4
  • 40
    • 33746093909 scopus 로고    scopus 로고
    • QTL analysis of adventitious root formation in common bean under contrasting phosphorus availability
    • Ochoa IE, Blair MW, Lynch JP (2006) QTL analysis of adventitious root formation in common bean under contrasting phosphorus availability. Crop Sci 46: 1609-1621.
    • (2006) Crop Sci , vol.46 , pp. 1609-1621
    • Ochoa, I.E.1    Blair, M.W.2    Lynch, J.P.3
  • 41
    • 0030758824 scopus 로고    scopus 로고
    • Genetic dissection of root growth in rice (Oryza sativa L.). II. Mapping quantitative trait loci using molecular markers
    • Price AH, Tomos AD (1997) Genetic dissection of root growth in rice (Oryza sativa L.). II. Mapping quantitative trait loci using molecular markers. Theor Appl Genet 95: 143-152.
    • (1997) Theor Appl Genet , vol.95 , pp. 143-152
    • Price, A.H.1    Tomos, A.D.2
  • 42
    • 62549107556 scopus 로고    scopus 로고
    • Nonadditive expression of homoeologous genes is established upon polyploidization in hexaploid wheat
    • Pumphrey M, Bai J, Laudencia-Chingcuanco D, Anderson O, Gill BS (2009) Nonadditive expression of homoeologous genes is established upon polyploidization in hexaploid wheat. Genetics 181: 1147-1157.
    • (2009) Genetics , vol.181 , pp. 1147-1157
    • Pumphrey, M.1    Bai, J.2    Laudencia-Chingcuanco, D.3    Anderson, O.4    Gill, B.S.5
  • 43
    • 84972496336 scopus 로고
    • That BLUP is a good thing: The estimation of random effects
    • Robinson GK (1991) That BLUP is a good thing: the estimation of random effects. Stat Sci 6: 15-32.
    • (1991) Stat Sci , vol.6 , pp. 15-32
    • Robinson, G.K.1
  • 44
    • 0000535847 scopus 로고
    • Nullisomic analysis in common wheat
    • Sears ER (1953) Nullisomic analysis in common wheat. Am Nat 87: 245-252.
    • (1953) Am Nat , vol.87 , pp. 245-252
    • Sears, E.R.1
  • 45
    • 69249208551 scopus 로고    scopus 로고
    • Integrated genetic map and genetic analysis of a region associated with root traits on the short arm of rye chromosome 1 in bread wheat
    • Sharma S, Bhat PR, Ehdaie B, Close TJ, Lukaszewski AJ, Waines JG (2009) Integrated genetic map and genetic analysis of a region associated with root traits on the short arm of rye chromosome 1 in bread wheat. Theor Appl Genet 119: 783-793.
    • (2009) Theor Appl Genet , vol.119 , pp. 783-793
    • Sharma, S.1    Bhat, P.R.2    Ehdaie, B.3    Close, T.J.4    Lukaszewski, A.J.5    Waines, J.G.6
  • 46
    • 0034934314 scopus 로고    scopus 로고
    • Evaluation of near-isogenic lines of rice introgressed with QTLs for root depth through marker-aided selection
    • Shen L, Courtois B, McNally KL, Robin S, Li Z (2001) Evaluation of near-isogenic lines of rice introgressed with QTLs for root depth through marker-aided selection. Theor Appl Genet 103: 75-83.
    • (2001) Theor Appl Genet , vol.103 , pp. 75-83
    • Shen, L.1    Courtois, B.2    McNally, K.L.3    Robin, S.4    Li, Z.5
  • 48
    • 34250883773 scopus 로고    scopus 로고
    • A QTL on chromosome 6A in bread wheat (Triticum aestivum) is associated with longer coleoptiles, greater seedling vigour and final plant height
    • Spielmeyer W, Hyles J, Joaquim P, Azanza F, Bonnett D, Ellis ME, Moore C, Richards RA (2007) A QTL on chromosome 6A in bread wheat (Triticum aestivum) is associated with longer coleoptiles, greater seedling vigour and final plant height. Theor Appl Genet 115: 59-66.
    • (2007) Theor Appl Genet , vol.115 , pp. 59-66
    • Spielmeyer, W.1    Hyles, J.2    Joaquim, P.3    Azanza, F.4    Bonnett, D.5    Ellis, M.E.6    Moore, C.7    Richards, R.A.8
  • 49
    • 84989060032 scopus 로고
    • The effect of chromosome 1B/1R translocation on the yield potential of certain spring wheats (Triticum aestivum L.)
    • Villareal RL, Rajaram S, Mujeeb-Kazi A, Toro ED (1991) The effect of chromosome 1B/1R translocation on the yield potential of certain spring wheats (Triticum aestivum L.). Plant Breed 106: 77-81.
    • (1991) Plant Breed , vol.106 , pp. 77-81
    • Villareal, R.L.1    Rajaram, S.2    Mujeeb-Kazi, A.3    Toro, E.D.4
  • 50
    • 79952444997 scopus 로고    scopus 로고
    • Location of genes conferring drought tolerance in rye and bread wheat
    • In: Jaradat AA (ed) Triticeae III. Aleppo, Syria. Science Publishers, Enfield
    • Waines JG, Ehdaie B, Barnhart DR (1998) Location of genes conferring drought tolerance in rye and bread wheat. In: Jaradat AA (ed) Triticeae III. Proceedings of the third international triticeae symposium, Aleppo, Syria. Science Publishers, Enfield, pp 285-292.
    • (1998) Proceedings of the third international triticeae symposium , pp. 285-292
    • Waines, J.G.1    Ehdaie, B.2    Barnhart, D.R.3
  • 53
    • 0037297614 scopus 로고    scopus 로고
    • Estimating polygenic effects using markers of the entire genome
    • Xu S (2003a) Estimating polygenic effects using markers of the entire genome. Genetics 163: 789-801.
    • (2003) Genetics , vol.163 , pp. 789-801
    • Xu, S.1
  • 54
    • 0347361672 scopus 로고    scopus 로고
    • Theoretical basis of the Beavis effect
    • Xu S (2003b) Theoretical basis of the Beavis effect. Genetics 165: 2259-2268.
    • (2003) Genetics , vol.165 , pp. 2259-2268
    • Xu, S.1
  • 55
    • 34249044971 scopus 로고    scopus 로고
    • An empirical Bayes method for estimating epistatic effects of quantitative trait loci
    • Xu S (2007) An empirical Bayes method for estimating epistatic effects of quantitative trait loci. Biometrics 63: 513-521.
    • (2007) Biometrics , vol.63 , pp. 513-521
    • Xu, S.1
  • 56
    • 34249023066 scopus 로고    scopus 로고
    • Genomewide analysis of epistatic effects for quantitative traits in barley
    • Xu S, Jia ZY (2007) Genomewide analysis of epistatic effects for quantitative traits in barley. Genetics 175: 1955-1963.
    • (2007) Genetics , vol.175 , pp. 1955-1963
    • Xu, S.1    Jia, Z.Y.2
  • 57
    • 0242381258 scopus 로고    scopus 로고
    • Bayesian model choice and search strategies for mapping interacting quantitative trait loci
    • Yi NJ, Xu SZ, Allison DB (2003) Bayesian model choice and search strategies for mapping interacting quantitative trait loci. Genetics 165: 867-883.
    • (2003) Genetics , vol.165 , pp. 867-883
    • Yi, N.J.1    Xu, S.Z.2    Allison, D.B.3
  • 58
  • 59
    • 29144459062 scopus 로고    scopus 로고
    • Efficient empirical Bayes variable selection and estimation in linear models
    • Yuan M, Lin Y (2005) Efficient empirical Bayes variable selection and estimation in linear models. J Am Stat Assoc 100: 1215-1225.
    • (2005) J Am Stat Assoc , vol.100 , pp. 1215-1225
    • Yuan, M.1    Lin, Y.2
  • 60
    • 0000278055 scopus 로고
    • Broadening the genetic variability of cultivated wheat by utilizing rye chromatin
    • In: Sakomoto S (ed) Plant Germplasm Institute, Koyoto University, Koyoto
    • Zeller FJ, Hsam SLK (1984) Broadening the genetic variability of cultivated wheat by utilizing rye chromatin. In: Sakomoto S (ed) 6th international wheat genetics symposium. Plant Germplasm Institute, Koyoto University, Koyoto, pp 161-173.
    • (1984) 6th international wheat genetics symposium , pp. 161-173
    • Zeller, F.J.1    Hsam, S.L.K.2
  • 61
    • 18844452395 scopus 로고    scopus 로고
    • Mapping multiple quantitative trait loci by Bayesian classification
    • Zhang M, Montooth KL, Wells MT, Clark AG, Zhang DB (2005) Mapping multiple quantitative trait loci by Bayesian classification. Genetics 169: 2305-2318.
    • (2005) Genetics , vol.169 , pp. 2305-2318
    • Zhang, M.1    Montooth, K.L.2    Wells, M.T.3    Clark, A.G.4    Zhang, D.B.5
  • 62
    • 41749100374 scopus 로고    scopus 로고
    • Mapping QTLs with epistatic effects and QTL × environment interactions for plant height using a doubled haploid population in cultivated wheat
    • Zhang KP, Tian JC, Zhao L, Wang SS (2008) Mapping QTLs with epistatic effects and QTL × environment interactions for plant height using a doubled haploid population in cultivated wheat. J Genet Genomics 35: 119-127.
    • (2008) J Genet Genomics , vol.35 , pp. 119-127
    • Zhang, K.P.1    Tian, J.C.2    Zhao, L.3    Wang, S.S.4
  • 63
    • 0034091618 scopus 로고    scopus 로고
    • Quantitative trait loci for root-penetration ability and root thickness in rice: Comparison of genetic backgrounds
    • Zheng HG, Babu RC, Pathan MS, Ali L, Huang N, Courtois B, Nguyen HT (2000) Quantitative trait loci for root-penetration ability and root thickness in rice: comparison of genetic backgrounds. Genome 43: 53-61.
    • (2000) Genome , vol.43 , pp. 53-61
    • Zheng, H.G.1    Babu, R.C.2    Pathan, M.S.3    Ali, L.4    Huang, N.5    Courtois, B.6    Nguyen, H.T.7


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