Bacterial communities reflect the spatial variation in pollutant levels in Brazilian mangrove sediment

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 99, Issue 2, 2011, Pages 341-354

  Peixoto, R ^a   Chaer, G M ^b   Carmo, F L ^a   Araujo F V ^c   Paes, J E ^d   Volpon, A ^d   Santiago, G A ^d   Rosado, A S ^a  

^a FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^b EMBRAPA AGROBIOLOGIA   (Brazil)

^c STATE UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^d Petrobas   (Brazil)

Author keywords

Bioindicators; Mangrove; Microbial diversity; NMS; Oil

Indexed keywords

ANTHRACENE; PETROLEUM DERIVATIVE; POLYCYCLIC AROMATIC HYDROCARBON;

ACTINOBACTERIA; ALPHAPROTEOBACTERIA; ARTICLE; BETAPROTEOBACTERIA; BIOREMEDIATION; BRAZIL; COASTAL WATERS; DENATURING GRADIENT GEL ELECTROPHORESIS; MANGROVE; MICROBIAL COMMUNITY; NONHUMAN; NUCLEOTIDE SEQUENCE; OIL SPILL; PRIORITY JOURNAL; PSEUDOMONAS; RHIZOSPHERE; SEDIMENT; UNINDEXED SEQUENCE; WATER CONTAMINATION; WATER POLLUTION INDICATOR; WATER SAMPLING;

BACTERIA; BACTERIAL LOAD; BIODIVERSITY; BRAZIL; DNA FINGERPRINTING; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ENVIRONMENTAL POLLUTANTS; HYDROCARBONS; NUCLEIC ACID DENATURATION; RHIZOPHORACEAE; SOIL; SOIL MICROBIOLOGY;

ACTINOBACTERIA; ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); BETAPROTEOBACTERIA; PSEUDOMONAS;

EID: 79952448053     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10482-010-9499-0     Document Type: Article

References (40)

1. M Aboim RS Peixoto HL Coutinho J Barbosa AS Rosado 2008 Soil bacterial community structure and soil quality in a slash-and-burn cultivation system in Southeastern Brazil Appl Soil Ecol 38 100 108 (Pubitemid 350217003)
2. DM Alongi 2002 Present state and future of the world's mangrove forests Austral Inst Mar Sci 29 331 349 (Pubitemid 35447371)
3. GM Amado-Filho LT Salgado MF Rebelo CE Rezende CS Karez WC Pfeiffer 2008 Heavy metals in benthic organisms from Todos os Santos Bay, Brazil Brazil J Biol 68 1 95 100 1:STN:280:DC%2BD1czhtVajtg%3D%3D (Pubitemid 351685091)
4. Bakken LR, Lindahl V (1995) Recovery of bacterial cells from soil. In: Trevors JT, van Elsas JD (eds) Nucleic acids in the environment methods and applications. Springer-Verlag, Berlin, Germany, pp 9-27
5. EB Barbier EW Koch BR Siliman SD Hacker E Wolanski J Primavera, et al. 2008 Coastal ecosystem-based management with nonlinear ecological functions and values Science 318 321 323 10.1126/science.1150349
6. Y Bashan G Holguin 1997 Azospirillum plant relationships environmental and physiological advances (1990-1996) Can J Microbiol 43 103 121 1:CAS:528:DyaK2sXhsFGmsr0%3D 10.1139/m97-015
7. Y Bashan G Holguin 2002 Plant growth-promoting bacteria: a potential tool for arid mangrove reforestation Trees 16 159 166 1:CAS:528:DC%2BD38XmsVKksLo%3D 10.1007/s00468-001-0152-4
8. JR Bray JT Curtis 1957 An ordination of the upland forest communities in southern Wisconsin Ecol Monitor 27 325 349 10.2307/1942268
9. KA Burns S Levings S Garrity 1993 How many years before mangrove ecosystem recover from catastrophic oil spills? Mar Pollut Bull 26 239 248 1:CAS:528:DyaK3sXlvVOqtrs%3D 10.1016/0025-326X(93)90062-O
10. KA Burns S Codi NC Duke 2000 Gladstone, Australia field studies: weathering and degradation of hydrocarbons in oiled mangrove and salt marsh sediments with and without the application of an experimental bioremediation protocol Mar Pollut Bull 41 392 402 1:CAS:528:DC%2BD3MXhs1ansA%3D%3D 10.1016/S0025-326X(00)00094-1 (Pubitemid 32035998)
11. R Costa M Götz N Mrotzek G Berg J Lottmann K Smalla 2006 Effects of site and plant species on rhizosphere community structure as revealed by molecular analysis of different microbial guilds FEMS Microbiol Ecol 56 236 249 1:CAS:528:DC%2BD28XkvVersbo%3D 10.1111/j.1574-6941.2005.00026.x 16629753
12. ME Douglas JA Endler 1982 Quantitative matrix comparisons in ecological and evolutionary investigations J Theor Biol 99 777 795 10.1016/0022-5193(82) 90197-7 (Pubitemid 13192309)
13. HL Drake NG Aumen C Kuhner C Wagner A Griehammer M Schmittroth 1996 Anaerobic microflora of Everglades sediments: effects of nutrients on population profiles and activities Appl Environ Microbiol 62 486 493 1:CAS:528: DyaK28XovVClug%3D%3D 16535236
14. NC Duke KA Burns RPJ Swannell O Dalhaus R Rupp 2000 Dispersant use and a bioremediation strategy as alternate means of reducing impacts of large oil spills on mangroves: the Gladstone field trials Mar Pollut Bull 41 403 412 1:CAS:528:DC%2BD3MXhs1ansQ%3D%3D 10.1016/S0025-326X(00)00133-8 (Pubitemid 32035999)
15. NC Duke JO Meynecke S Dittmann AM Ellison K Anger U Berguer, et al. 2007 A world without mangroves? Science 317 41 42 1:CAS:528:DC%2BD2sXns1Cruro%3D 10.1126/science.317.5834.41b 17615322
16. Embrapa (1997) Manual de métodos de análise de solo. Centro Nacional de Pesquisa em Solos, SNLCS, Rio de Janeiro, pp 212
17. NCM Gomes LR Borges R Paranhos FN Pinto LC Mendonça-Hagler K Smalla 2008 Exploring the diversity of bacterial communities in sediments of urban mangrove forests FEMS Microbiol Ecol 66 1 96 109 1:CAS:528: DC%2BD1cXht1ektL7K 10.1111/j.1574-6941.2008.00519.x
18. Heuer H, Smalla K (1997) Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis for studying soil microbial communities. In: van Elsas JD, Trevors J, Wellington EMH (eds) Modern soil microbiology. Marcel Dekker Inc., New York, pp 353-373
19. G Holguin P Vazquez Y Bashan 2001 The role of sediment microorganisms in the productivity, conservation, and rehabilitation of mangrove ecosystems: an overview Biol Fert Soils 33 265 278 1:CAS:528:DC%2BD3MXhs1Ggsbo%3D 10.1007/s003740000319 (Pubitemid 32375844)
20. SE Holm E Falsen 1967 An antigen free medium for cultivation of β-hemolytic streptococci Acta Pathol Microbiol Immunol Scand 69 264 276 1:CAS:528:DyaF2sXktFylu7c%3D 10.1111/j.1699-0463.1967.tb03733.x
21. K Kathiresan BL Binghan 2001 Biology of mangroves and mangrove ecosystems Adv Mar Biol 40 81 251 10.1016/S0065-2881(01)40003-4
22. EO King MK Ward DE Raney 1954 Two simple media for the demonstration of pyocyanin and fluorescin J Lab Clin Med 44 301 307 1:STN:280: DyaG2c7gsVCisQ%3D%3D 13184240
23. JB Kruskal 1964 Nonmetric multidimensional scaling: a numerical method Psychometrika 29 115 129 10.1007/BF02289694
24. E Kuster ST Williams 1964 Selection of media for isolation of streptomycetes Nature 202 928 929 10.1038/202928a0
25. SY Lee RJK Dunn RA Young RM Connolly PER Dale R Dehayr, et al. 2006 Impact of urbanization on coastal wetland structure and function Aust Ecol 31 149 163 10.1111/j.1442-9993.2006.01581.x (Pubitemid 43325971)
26. H Li Q Zhao MC Boudfadel A Venosa 2007 A universal nutrient application strategy for the bioremediation of oil-polluted beaches Mar Pollut Bull 54 1146 1161 1:CAS:528:DC%2BD2sXotlKjtb8%3D 10.1016/j.marpolbul.2007.04.015 17588615 (Pubitemid 47094842)
27. PC Liao BH Huang S Huang 2007 Microbial community composition of the Danshui River Estuary of Northern Taiwan and the practicality of the phylogenetic method in microbial barcoding Microbial Ecol 54 497 507 10.1007/s00248-007-9217-2 (Pubitemid 47546802)
28. LKP Martins IA Nascimento G Fillmann R King AJA Evangelista JW Readman MH Depledge 2005 Lysosomal responses as a diagnostic tool for the detection of chronic petroleum pollution at Todos os Santos Bay Brazil Environ Res 99 387 396 1:CAS:528:DC%2BD2MXht1GhtLjN 10.1016/j.envres.2005.01.001
29. Mather PM (1976) Computational methods of multivariate analysis in physical geography. J. Wiley & Sons, London
30. A Nocker KE Sossa AK Camper 2007 Molecular monitoring of disinfection efficacy using propidium monoazide in combination with quantitative PCR J Microbiol Methods 70 252 260 1:CAS:528:DC%2BD2sXns1ykurs%3D 10.1016/j.mimet. 2007.04.014 17544161 (Pubitemid 47198131)
31. RS Peixoto HLC Coutinho B Madari PLOA Machado N Rumjanek JD van Elsas L Seldin AS Rosado 2006 Soil aggregation and bacterial community structure as affected by tillage and cover cropping in the Brazilian Cerrados Soil Till Res 90 16 28 10.1016/j.still.2005.08.001 (Pubitemid 44219018)
32. LF Roesch RR Fulthorpe A Riva G Casella A Hadwing KM Kent, et al. 2007 Pyrosequencing enumerates and contrasts soil microbial diversity ISME J 1 283 290 1:CAS:528:DC%2BD1cXksFSnsrs%3D 18043639 (Pubitemid 47227850)
33. Santos HF, Carmo FL, Paes JE, Rosado AS, Peixoto RS (2010a) Biorremediation of mangroves impacted by petroleum. Water Air Soil Poll. doi: 10.1007/s11270-010-0536-4
34. Santos HF, Carmo FL, Cury JC, Rosado AS, Peixoto RS (2010b) 18S rDNA sequences from microeukaryotes reveal oil indicators in mangrove sediment. PLoS ONE. http://dx.plos.org/10.1371/journal.pone.0012437
35. Shannon CE, Weaver W (1949) The mathematical theory of communication. University of Dlinois Press, Champaign, IL
36. US EPA 8270D (1998) Analysis of US EPA method 8270D - semivolatile organic compounds by GC/MS. http://www.epa.gov/osw/hazard/testmethods/sw846/ pdfs/8270d.pdf. Accessed 8 Jan 2010
37. N Venturini LR Tommasi 2004 Polycyclic aromatic hydrocarbons and changes in the trophic structure of polychaete assemblages in sediments of Todos os Santos Bay, Northeastern, Brazil Mar Pollut Bull 48 97 107 1:CAS:528: DC%2BD2cXisFKhtA%3D%3D 10.1016/S0025-326X(03)00331-X 14725880 (Pubitemid 38058244)
38. R Xu JP Obbard ETC Tay 2003 Optimization of slow-release fertilizer dosage for bioremediation of oil-contaminated beach sediment in a tropical environment World J Microbiol Biotechnol 19 719 725 1:CAS:528: DC%2BD3sXmtFKkt7o%3D 10.1023/A:1025116421986 (Pubitemid 37089981)
39. R Xu ANL Lau YG Lim JP Obbard 2005 Bioremediation of oil-contaminated sediments on an inter-tidal shoreline using a slow-release fertilizer and chitosan Mar Pollut Bull 51 1062 1070 1:CAS:528:DC%2BD2MXht1Sjs7rI 10.1016/j.marpolbul.2005.02.049 16291207
40. T Yun L Yuan-Rong Z Tian-Ling C Li-Zhe C Xiao-Xing Y Chong-Ling 2008 Contamination and potential biodegradation of polycyclic aromatic hydrocarbons in angrove sediments of Xiamen, China Mar Pollut Bull 56 1184 1191 10.1016/j.marpolbul.2008.02.014