MRI in developmental biology and the construction of developmental Atlases

Cold Spring Harbor Protocols

Volumn 6, Issue 3, 2011, Pages

  Ruffins, Seth W ^a   Jacobs, Russell E ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

AMPHIBIA; ARTICLE; BOOK; COMPUTER GRAPHICS; DEVELOPMENTAL BIOLOGY; DIFFUSION TENSOR IMAGING; EMBRYO DEVELOPMENT; FOWL; GASTRULATION; HEART DEVELOPMENT; IMAGE PROCESSING; MAGNETIC FIELD; MICROSCOPIC MAGNETIC RESONANCE IMAGING; MORPHOGENESIS; MOUSE; NEURULATION; NON INVASIVE PROCEDURE; NONHUMAN; NUCLEAR MAGNETIC RESONANCE IMAGING; QUAIL; SIGNAL NOISE RATIO; THREE DIMENSIONAL IMAGING;

EID: 79952413991     PISSN: None     EISSN: 15596095     Source Type: Journal    
DOI: 10.1101/pdb.top100     Document Type: Article

References (27)

1. Baldock RA, Verbeek FJ, Vonesch J-L. 1997. 3-D reconstructions for graphical databases of gene expression. Semin Cell Dev Biol 8: 499-507.
2. Benveniste H, Blackband S. 2002. MR microscopy and high resolution small animal MRI: Applications in neuroscience research. Prog Neurobiol 67: 393-420.
3. Bogue JY. 1932. The heart rate of the developing chick. J Exp Biol 9: 351-358.
4. Brune RM, Bard JBL, Dubreuil C, Guest E, Hill W, Kaufman M, Stark M, Davidson D, Baldock RA. 1999. A three-dimensional model of the mouse at embryonic day 9. Dev Biol 216: 457-468.
5. Callaghan PT. 1991. Principles of nuclear magnetic resonance microscopy. Oxford University Press, New York.
6. Dhenain M, Ruffins SW, Jacobs RE. 2001. Three-dimensional digital mouse atlas using high-resolution MRI. Dev Biol 232: 458-470.
7. Glover P, Mansfield P. 2002. Limits to magnetic resonance microscopy. Rep Prog Phys 65: 1489-1511.
8. Guest E, Baldock R. 1996. Automatic reconstruction of serial sections using the finite element method. Bioimaging 3: 154-167.
9. Haacke EM, Brown RW, Thompson MR, Venkatesan R. 1999. Magnetic resonance imaging: Physical principles and sequence design. Wiley, New York.
10. Hendrick RE, Raff U. 1992. Image contrast and noise. In Magnetic resonance imaging (ed. Stark DD, Bradley WGJr), pp. 109-144. Mosby-Year Book, St. Louis.
11. Hogers B, van der Weerd L, Olofsen H, van der Graaf LM, DeRuiter MC, Gittenberger-de Groot AC, Poelmann RE. 2009. Non-invasive tracking of avian development in vivo by MRI. NMR Biomed 22: 365-373.
12. Holmes WM, McCabe C, Mullin JM, Condon B, Bain MM. 2008. Noninvasive self-gated magnetic resonance cardiac imaging of developing chick embryos in ovo. Circulation 117: e346-e347.
13. Holmes WM, McCabe C, Mullin JM, Condon B, Bain MM. 2009. In ovo non-invasive quantification of the myocardial function and mass of chick embryos using magnetic resonance imaging. NMR Biomed 22: 745-752.
14. Huang H, Xue R, Zhang J, Ren T, Richards LJ, Yarowsky P, Miller MI, Mori S. 2009. Anatomical characterization of human fetal brain development with diffusion tensor magnetic resonance imaging. J Neurosci 29: 4263-4273.
15. Kaufman MH, Brune RM, Baldock RA, Bard JBL, Davidson D. 1997. Computer-aided 3-D reconstruction of serially sectioned mouse embryos: Its use in integrating anatomical organization. Int J Dev Biol 41: 223-233.
16. Keller RE. 1975. Vital dye mapping of the gastrula and neurula of Xenopus laevis. I. Prospective areas and morphogenetic movements of the superficial layer. Dev Biol 42: 222-241.
17. Keller RE. 1976. Vital dye mapping of the gastrula and neurula of Xenopus laevis. II. Prospective areas and morphogenetic movements of the deep layer. Dev Biol 51: 118-137.[Medline]
18. Mori S, Itoh R, Zhang J, Kaufmann WE, van Zijl PCM, Solaiyappan M, Yarowsky P. 2001. Diffusion tensor imaging of the developing mouse brain. Magn Reson Med 46: 18-23.
19. Narasimhan PT, Jacobs RE. 2005. Microscopy in magnetic resonance imaging. In Annual reports on NMR spectroscopy (ed. Webb GA), Vol. 55, pp. 259-299. Elsevier, San Diego.
20. Nieuwkoop PD, Florschütz PA. 1950. Quelques caractères spéciaux de la gastrulation et de la neurulation de l'oeuf de Xenopus laevis Daud. et de quelques autres anoures. Arch Biol 61: 113-150.
21. Papan C, Boulat B, Velan SS, Fraser SE, Jacobs RE. 2006. Time-lapse tracing of mitotic cell divisions in the early Xenopus embryo using microscopic MRI. Dev Dyn 235: 3059-3062.
22. Papan C, Boulat B, Velan SS, Fraser SE, Jacobs RE. 2007a. Two-dimensional and three-dimensional time-lapse microscopic magnetic resonance imaging of Xenopus gastrulation movements using intrinsic tissue-specific contrast. Dev Dyn 236: 494-501.
23. Papan C, Boulat B, Velan SS, Fraser SE, Jacobs RE. 2007b. Formation of the dorsal marginal zone in Xenopus laevis analyzed by time-lapse microscopic magnetic resonance imaging. Dev Biol 305: 161-171.
24. Pautler RG, Mongeau R, Jacobs RE. 2003. In vivo trans-synaptic tract tracing from the murine striatum and amygdala utilizing manganese enhanced MRI (MEMRI). Magn Reson Med 50: 33-39.
25. Ruffins SW, Martin M, Keough L, Truong S, Fraser SE, Jacobs RE, Lansford R. 2007. Digital three-dimensional atlas of quail development using high-resolution MRI. ScientificWorldJournal 7: 592-604.
26. Tyszka JM, Pautler RG, Lansford R, Jacobs RE. 2002. Near real-time T2-weighted MR microscopy of the in ovo Japanese quail embryo. In International Society for Magnetic Resonance in Medicine, Tenth Scientific Meeting and Exhibition, Honalulu HI. International Society for Magnetic Resonance in Medicine, Berkeley, CA.
27. Vinitski S, Griffey R, Fuka M, Matwiyoff N, Prost R. 1987. Effect of the sampling rate on magnetic resonance imaging. Magn Reson Med 5: 278-285