Significance of absorption spectra for the chemotaxonomic characterization of pigmented bacteria;Pigmentli bakterilerin kemotaksonomik karakterizasyonu için absorbsiyon spektrumlarının önemi

Turkish Journal of Biology

Volumn 35, Issue 2, 2011, Pages 167-175

  Şahin, Nurettin ^a  

^a MUGLA SITKI KOCMAN UNIVERSITY   (Turkey)

Author keywords

Bacterial carotenoids; Chemotaxonomy; Pigment absorption spectra

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 79952373264     PISSN: 13000152     EISSN: None     Source Type: Journal    
DOI: 10.3906/biy-0910-132     Document Type: Article

References (53)

1. Sobin B, Stahly G. The isolation and absorption spectrum maxima of bacterial carotenoid pigments. J Bacteriol 44: 265-276, 1942.
2. Liaaen-Jensen S, Andrewes AG. Microbial carotenoids. Ann Rev Microbiol 26: 225-248, 1972.
3. Goodwin TW. The biochemistry of the carotenoids. Plants 1: 33-76, 1980.
4. G. Carotenoid biosynthesis and biotechnological application. Arch Biochem Biophys 385: 4-12, 2001.
5. Goodwin TW, Britton G. Distribution and analysis of carotenoids. In: Goodwin TW. ed. Plant Pigments. Academic Press; 1988, pp. 61-132.
6. Margalith PZ. Pigment Microbiology. Chapman and Hall. London; 1992.
7. Aragno M, Schlegel HG. The mesophilic hydrogen-oxidizing (Knallgas) bacteria. In: Balows A, Trüper HG, Dworkin M et al. eds. The Prokaryotes. A Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications. Springer-Verlag; 1992, pp. 344-384.
8. Shivaji S, Rao NS, Saisree L et al. Isolates of Arthrobacter from the soils of Schirmacher Oasis, Antarctica. Polar Biol 10: 225-229, 1989.
9. Vandamme P, Bernardet JF, Segers P et al. New perspectives in the classification of the flavobacteria: Description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev. Int J Syst Bacteriol 44: 827-831, 1994.
10. Takeuchi M, Hamana K, Hiraishi A. Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 51: 1405-1417, 2001.
11. Yabuuchi E, Yano I, Oyaizu H et al. Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulate comb. nov., and two genospecies of the genus Sphingomonas. Microbiol Immunol 34: 99-119, 1990.
12. Shivaji S, Rao NS, Saisree L et al. Isolation and identification of Micrococcus roseus and Planococcus sp. from Schirmacher Oasis, Antarctica. J Biosci 13: 409-414, 1988.
13. Kocur M. Genus Micrococcus. In: Sneath P, Holt JG. eds. Bergey's Manual of Systematic Bacteriology. Williams and Wilkins; 1986, pp. 1004-1008.
14. Shivaji S, Ray MK, Rao NS et al. Sphingobacterium antarcticus sp. nov., a psychrotrophic bacterium from the soils of Schirmacher Oasis, Antarctica. Int J Syst Bacteriol 42: 102-106, 1992.
15. Holmes B, Owen R, McMeekin T. Genus Flavobacterium. In: Krieg N, Holt JG. eds. Bergey's Manual of Systematic Bacteriology. Williams and Wilkins; 1984, pp. 353-361.
16. Krieg NR, Holt JG. Bergey's Manual of Systematic Bacteriology. Williams and Wilkins. Baltimore; 1984.
17. Balows A, Trüper HG, Dworkin M et al. The Prokaryotes: A Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications. Springer-Verlag. Berlin, Heidelberg, New York; 1992.
18. Starr MP, Stephens WL. Pigmentation and taxonomy of the genus Xanthomonas. J Bacteriol 87: 293-302, 1964.
19. Starr MP. Genus Xanthomonas. In: Starr MP, Stolp H, Truper HG et al. eds. The Prokaryotes. A Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications. Springer-Verlag; 1981, pp. 742-763.
20. Starr MP, Jenkins CL, Bussey LB et al. Chemotaxonomic significance of the Xanthomonadins, novel brominated aryl polyene pigments produced by bacteria of the genus Xanthomonas. Arch Microbiol 113: 1-9, 1977.
21. Bradbury JF. Genus Xanthomonas. In: Krieg NR, Holt JG. eds. Bergey's Manual of Systematic Bacteriology. Williams and Wilkins; 1984, pp. 199-210.
22. Schaad NW, Stall RE. Xanthomonas. In: Schaad NW. ed. Laboratory Guide for Identification of Plant Pathogenic Bacteria. The American Phytopathological Society; 1988, pp. 81-94.
23. Taylor RF. Bacterial triterpenoids. Microbiol Rev 48: 181-198, 1984.
24. Meyer JM. Pyoverdines: pigments, siderophores and potential taxonomic markers of fluorescent Pseudomonas species. Arch Microbiol 174: 135-142, 2000.
25. Ellinghausen HC, Jr., Pelczar MJ, Jr. Spectrophotometric characterization of Neisseria pigments. J Bacteriol 70: 448-453, 1955.
26. Shiba T, Simidu U. Erythrobacter longus gen. nov., sp. nov., an aerobic bacterium which contains bacteriochlorophyll a. Int J Syst Bacteriol 32: 211-217, 1982.
27. Takaichi S, Shimada K, Ishidsu JI. Carotenoids from the aerobic photosynthetic bacterium, Erythrobacter longus: β-Carotene and its hydroxyl derivatives. Arch Microbiol 153: 118-122, 1990.
28. Shiba T. Roseobacter litoralis gen. nov., sp.nov., and Roseobacter denitrificans sp. nov., aerobic pink-pigmented bacteria witch contain bacteriochlorophyll a. Syst Appl Microbiol 14: 140-145, 1991.
29. Fuerst JA, Hawkins JA, Holmes A et al. Porphyrobacter neustonensis gen. nov., sp. nov., an aerobic bacteriochlorophyllsynthesizing budding bacterium from fresh water. Int J Syst Bacteriol 43: 125-134, 1993.
30. Yurkov V, Gorlenko VM. New species of aerobic bacteria from the genus Erythromicrobium containing bacteriochlorophyll a. Microbiology 61: 163-168, 1993.
31. Yurkov V, Gorlenko VM. A new genus of freshwater aerobic, bacteriochlorophyll a-containing bacteria, Roseococcus gen. nov. Microbiology 60: 628-632, 1992.
32. Yurkov V, Stackebrandt E, Holmes A et al. Phylogenetic positions of novel aerobic, bacteriochlorophyll a-containing bacteria and description of Roseococcus thiosulfatophilus gen. nov., sp. nov., Erythromicrobium ramosum gen. nov., sp. nov., and Erythrobacter litoralis sp. nov. Int J Syst Bacteriol 44: 427-434, 1994.
33. Hiraishi A, Ueda Y. Intrageneric structure of the genus Rhodobacter: transfer of Rhodobacter sulfodophilus and related marine species to the genus Rhodovulumgen.nov. Int J Syst Bact 44: 15-23, 1994.
34. Phaff H, Fell J. Discussion of the genera of asporogenous yeasts not belonging to the sporobolomycetaceae. In: Lodder J. ed. The yeasts - a taxonomic study. North-Holland; 1970, pp. 1088-1145.
35. Frigaard NU, Larsen KL, Cox RP. Spectrochromatography of photosynthetic pigments as a fingerprinting technique for microbial phototrophs. FEMS Microbiol Ecol 20: 69-77, 1996.
36. Tamer, AÜ. Bakteri taksonomisinde pigment spektrumlari{dotless}ni{dotless}n yeri. XII. Ulusal Biyoloji Kongresi Bildirileri, Edirne, Cilt 5: 1-5, 1994.
37. Litchfield CD, Oren A. Polar lipids and pigments as biomarkers for the study of the microbial community structure of solar salterns. Hydrobiologia 466: 81-89, 2001.
38. Willcox WR, Lapage SP, Bascomb S et al. Identification of bacteria by computer: theory and programming. J Gen Microbiol 77: 317-330, 1973.
39. Schmidt K, Connor A, Britton G. Analysis of pigments: carotenoids and related polyenes. In: Goodfellow M, O'Donnel AG. eds. Chemical Methods in Prokaryotic Systematics. John Wiley and Sons Ltd.; 1994, pp. 403-461.
40. Schiedt K, Liaaen-Jensen S. Isolation and analysis. In: Britton G, Liaaen-Jensen S, Pfander H. eds. Carotenoids. Birkhauser; 1995, pp. 81-108.
41. Savitzky A, Golay M.J.E. Smoothing and differentiation of data by simplified least squares procedures. Anal Chem 36: 1627-1639, 1964.
42. Sneath P.H.A. BASIC program for the most diagnostic properties of groups from an identification matrix of percent positive characters. Comput Geosci 6: 21-26, 1979.
43. Sokal R.R, Rolf F.J. Randomization tests. In: Biometry: The Principles and Practice of Statistics in Biological Research. W.H. Freeman and Company; 1995, pp. 803-819.
44. Manly BFJ. Distance matrices and spatial data. In: Randomization, Bootstrap and Monte Carlo Methods in Biology. Chapman and Hall; 1997, pp. 172-204.
45. Jenni B, Aragno M. Xanthobacter agilis sp.nov., a motile, dinitrogen-fixing, hydrogen-oxidizing bacterium. Syst Appl Microbiol 9: 254-257, 1987.
46. Wiegel JKW, Schlegel HG. Genus Xanthobacter. In: Krieg NR, Holt JG. eds. Bergey's Manual of Systematic Bacteriology. Williams and Wilkins; 1984, pp. 325-333.
47. Jenni B, Aragno M, Wiegel KW. Numerical analysis and DNADNA hybridization studies on Xanthobacter and emendation of Xanthobacter flavus. Syst Appl Microbiol 9: 247-253, 1987.
48. Lin S, Schraft H, Oduneru JA et al. Identification of contamination sources of Bacillus cereus in pasteurized milk. Int J Food Microbiol 43: 159-171, 1998.
49. Chattopadhyay MK, Jagannadham MV, Vairamani M et al. Carotenoid pigments of an antarctic psychrotrophic bacterium Micrococcus roseus: Temperature dependent biosynthesis, structure, and interaction with synthetic membranes. Biochem Biophys Res Commun 239: 85-90, 1997.
50. 50-carotenoids 25. Revised structures of carotenoids associated with membranes in psychrotrophic Micrococcus roseus. Biochem Syst Ecol 25: 547-552, 1997.
51. Reddy GSN, Prakash JSS, Prabahar V et al. Kocuria polaris sp. nov., an orange-pigmented psychrophilic bacterium isolated from an Antarctic cyanobacterial mat sample. Int J Syst Evol Microbiol 53: 183-187, 2003.
52. Ke B, Imsgard F, Kjosen H et al. Electronic spectra of carotenoids at 77 K. Biochim Biophys Acta 210: 139-152, 1970.
53. Landrum JT, Bone RA. Lutein, zeaxanthin, and the macular pigment. Arch Biochem Biophys 385: 28-40, 2001.