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Volumn 11, Issue 6, 2011, Pages 1094-1098

A stringent approach to improve the quality of nitrotyrosine peptide identifications

Author keywords

Bioinformatics; High throughtput proteomics; Peptide

Indexed keywords

3 NITROTYROSINE; PEPTIDE; TYROSINE;

EID: 79952303178     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201000526     Document Type: Article
Times cited : (13)

References (21)
  • 1
    • 64749100828 scopus 로고    scopus 로고
    • Protein tyrosine nitration - an update
    • Ischiropoulos, H., Protein tyrosine nitration - an update. Arch. Biochem. Biophys. 2009, 484, 117-121.
    • (2009) Arch. Biochem. Biophys. , vol.484 , pp. 117-121
    • Ischiropoulos, H.1
  • 4
    • 64749105877 scopus 로고    scopus 로고
    • Understanding peroxynitrite biochemistry and its potential for treating human diseases
    • Beckman, J. S., Understanding peroxynitrite biochemistry and its potential for treating human diseases. Arch. Biochem. Biophys. 2009, 484, 114-116.
    • (2009) Arch. Biochem. Biophys. , vol.484 , pp. 114-116
    • Beckman, J.S.1
  • 5
    • 69949102851 scopus 로고    scopus 로고
    • Role of protein tyrosine nitration in neurodegenerative diseases and atherosclerosis
    • Lee, J. R., Kim, J. K., Lee, S. J., Kim, K. P., Role of protein tyrosine nitration in neurodegenerative diseases and atherosclerosis. Arch. Pharm. Res. 2009, 32, 1109-1118.
    • (2009) Arch. Pharm. Res. , vol.32 , pp. 1109-1118
    • Lee, J.R.1    Kim, J.K.2    Lee, S.J.3    Kim, K.P.4
  • 7
    • 0041620467 scopus 로고    scopus 로고
    • Analysis of nitrated proteins by nitrotyrosine-specific affinity probes and mass spectrometry
    • Nikov, G., Bhat, V., Wishnok, J. S., Tannenbaum, S. R., Analysis of nitrated proteins by nitrotyrosine-specific affinity probes and mass spectrometry. Anal. Biochem. 2003, 320, 214-222.
    • (2003) Anal. Biochem. , vol.320 , pp. 214-222
    • Nikov, G.1    Bhat, V.2    Wishnok, J.S.3    Tannenbaum, S.R.4
  • 8
    • 13144259687 scopus 로고    scopus 로고
    • Immunohistochemical methods to detect nitrotyrosine
    • Viera, L., Ye, Y. Z., Estevez, A. G., Beckman, J. S., Immunohistochemical methods to detect nitrotyrosine. Methods Enzymol. 1999, 301, 373-381.
    • (1999) Methods Enzymol. , vol.301 , pp. 373-381
    • Viera, L.1    Ye, Y.Z.2    Estevez, A.G.3    Beckman, J.S.4
  • 9
    • 34250879061 scopus 로고    scopus 로고
    • A method for selective enrichment and analysis of nitrotyrosine-containing peptides in complex proteome samples
    • Zhang, Q., Qian, W. J., Knyushko, T. V., Clauss, T. R. et al., A method for selective enrichment and analysis of nitrotyrosine-containing peptides in complex proteome samples. J. Proteome Res. 2007, 6, 2257-2268.
    • (2007) J. Proteome Res. , vol.6 , pp. 2257-2268
    • Zhang, Q.1    Qian, W.J.2    Knyushko, T.V.3    Clauss, T.R.4
  • 10
    • 71649087196 scopus 로고    scopus 로고
    • Chemical labeling and enrichment of nitrotyrosine-containing peptides. Talanta, 80, 1503-1512.
    • Abello, N., Barroso, B., Kerstjens, H. A., Postma, D. S., Bischoff, R., Chemical labeling and enrichment of nitrotyrosine-containing peptides. Talanta 2010, 80, 1503-1512.
    • (2010)
    • Abello, N.1    Barroso, B.2    Kerstjens, H.A.3    Postma, D.S.4    Bischoff, R.5
  • 11
    • 75149167439 scopus 로고    scopus 로고
    • In vitro and in vivo protein-bound tyrosine nitration characterized by diagonal chromatography
    • Ghesquiere, B., Colaert, N., Helsens, K., Dejager, L. et al., In vitro and in vivo protein-bound tyrosine nitration characterized by diagonal chromatography. Mol. Cell Proteomics 2009, 8, 2642-2652.
    • (2009) Mol. Cell Proteomics , vol.8 , pp. 2642-2652
    • Ghesquiere, B.1    Colaert, N.2    Helsens, K.3    Dejager, L.4
  • 12
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins, D. N., Pappin, D. J., Creasy, D. M., Cottrell, J. S., Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20, 3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 13
    • 44949201817 scopus 로고    scopus 로고
    • Protein identification using a quadrupole ion trap mass spectrometer and SEQUEST database matching
    • Chapter 16, Unit 16 10.
    • Moore, R. E., Young, M. K., Lee, T. D., Protein identification using a quadrupole ion trap mass spectrometer and SEQUEST database matching. Curr. Protoc. Protein Sci. 2001, Chapter 16, Unit 16 10.
    • (2001) Curr. Protoc. Protein Sci.
    • Moore, R.E.1    Young, M.K.2    Lee, T.D.3
  • 14
    • 77953894189 scopus 로고    scopus 로고
    • Nitration of the tumor suppressor protein p53 at tyrosine 327 promotes p53 oligomerization and activation
    • Yakovlev, V. A., Bayden, A. S., Graves, P. R., Kellogg, G. E., Mikkelsen, R. B., Nitration of the tumor suppressor protein p53 at tyrosine 327 promotes p53 oligomerization and activation. Biochemistry 2010, 49, 5331-5339.
    • (2010) Biochemistry , vol.49 , pp. 5331-5339
    • Yakovlev, V.A.1    Bayden, A.S.2    Graves, P.R.3    Kellogg, G.E.4    Mikkelsen, R.B.5
  • 15
    • 77956308889 scopus 로고    scopus 로고
    • Angiotensin II inhibits insulin-stimulated GLUT4 translocation and Akt activation through tyrosine nitration-dependent mechanisms. PLoS One, 5, e10070.
    • Csibi, A., Communi, D., Muller, N., Bottari, S. P., Angiotensin II inhibits insulin-stimulated GLUT4 translocation and Akt activation through tyrosine nitration-dependent mechanisms. PLoS One 2010, 5, e10070.
    • (2010)
    • Csibi, A.1    Communi, D.2    Muller, N.3    Bottari, S.P.4
  • 16
    • 0033539683 scopus 로고    scopus 로고
    • Requirements for heme and thiols for the nonenzymatic modification of nitrotyrosine
    • Balabanli, B., Kamisaki, Y., Martin, E., Murad, F., Requirements for heme and thiols for the nonenzymatic modification of nitrotyrosine. Proc. Natl. Acad. Sci. USA 1999, 96, 13136-13141.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 13136-13141
    • Balabanli, B.1    Kamisaki, Y.2    Martin, E.3    Murad, F.4
  • 17
    • 0014194993 scopus 로고
    • Conversion of 3-nitrotyrosine to 3-aminotyrosine in peptides and proteins
    • Sokolovsky, M., Riordan, J. F., Vallee, B. L., Conversion of 3-nitrotyrosine to 3-aminotyrosine in peptides and proteins. Biochem. Biophys. Res. Commun. 1967, 27, 20-25.
    • (1967) Biochem. Biophys. Res. Commun. , vol.27 , pp. 20-25
    • Sokolovsky, M.1    Riordan, J.F.2    Vallee, B.L.3
  • 18
    • 58149291366 scopus 로고    scopus 로고
    • Factors that contribute to the misidentification of tyrosine nitration by shotgun proteomics
    • Stevens, S. M., Jr., Prokai-Tatrai, K., Prokai, L., Factors that contribute to the misidentification of tyrosine nitration by shotgun proteomics. Mol. Cell Proteomics 2008.
    • (2008) Mol. Cell Proteomics
    • Stevens Jr, S.M.1    Prokai-Tatrai, K.2    Prokai, L.3
  • 19
    • 75149144996 scopus 로고    scopus 로고
    • A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed
    • Olsen, J. V., Schwartz, J. C., Griep-Raming, J., Nielsen, M. L. et al., A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed. Mol. Cell Proteomics 2009, 8, 2759-2769.
    • (2009) Mol. Cell Proteomics , vol.8 , pp. 2759-2769
    • Olsen, J.V.1    Schwartz, J.C.2    Griep-Raming, J.3    Nielsen, M.L.4
  • 20
    • 33749521835 scopus 로고    scopus 로고
    • Improved tandem mass spectrometric characterization of 3-nitrotyrosine sites in peptides
    • Ghesquiere, B., Goethals, M., Van Damme, J., Staes, A. et al., Improved tandem mass spectrometric characterization of 3-nitrotyrosine sites in peptides. Rapid Commun. Mass Spectrom. 2006, 20, 2885-2893.
    • (2006) Rapid Commun. Mass Spectrom. , vol.20 , pp. 2885-2893
    • Ghesquiere, B.1    Goethals, M.2    Van Damme, J.3    Staes, A.4
  • 21
    • 58149289353 scopus 로고    scopus 로고
    • Peptizer, a tool for assessing false positive peptide identifications and manually validating selected results
    • Helsens, K., Timmerman, E., Vandekerckhove, J., Gevaert, K., Martens, L., Peptizer, a tool for assessing false positive peptide identifications and manually validating selected results. Mol. Cell Proteomics 2008, 7, 2364-2372.
    • (2008) Mol. Cell Proteomics , vol.7 , pp. 2364-2372
    • Helsens, K.1    Timmerman, E.2    Vandekerckhove, J.3    Gevaert, K.4    Martens, L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.