The complete genome sequence of a passion fruit woodiness virus isolate from australia determined using deep sequencing, and its relationship to other potyviruses

Archives of Virology

Volumn 156, Issue 3, 2011, Pages 479-482

  Wylie, Stephen J ^a   Jones, Michael G K ^a  

^a MURDOCH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

POLYPROTEIN; VIRUS PROTEIN; VIRUS RNA;

ARTICLE; AUSTRALIA; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; HIGH THROUGHPUT NUCLEOTIDE SEQUENCING; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; POTYVIRUS; VIRUS GENOME;

AUSTRALIA; CLUSTER ANALYSIS; GENOME, VIRAL; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYPROTEINS; POTYVIRUS; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS;

NIA; PASSIFLORA EDULIS; PASSION FRUIT WOODINESS VIRUS;

EID: 79952247478     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-010-0845-3     Document Type: Article

References (12)

1. Adams MJ, Antoniw JF, Fauquet CM (2005) Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol 150:459-479
2. Buchen-Osmond C, Crabtree K, Gibbs A, McLean G (1988) Viruses of plants in Australia. Australian National University Printing Service, Canberra
3. Chung BYW, Miller WA, Atkins JF, Firth AE (2008) An overlapping essential gene in the Potyviridae. Proc Natl Acad Sci USA 105:5897-5902
4. Drummond AJ, Ashton B, Cheung M, Heled J, Kearse M, Moir R, Stones-Havas S, Thierer T, Wilson A (2010) Geneious v5.0, http://www.geneious.com
5. Gibbs A, Mackenzie A (1997) A primer pair for amplifying part of the genome of all potyvirids by RT-PCR. J Virol Meth 63:9-16
6. Gibbs A, Ohshima K (2010) Potyviruses and the digital revolution. Annu Rev Phytopathol 48:205-223
7. Nascimento AVS, Santana EN, Braz ASK, Alfenas PF, Pio-Ribeiro G, Andrade GP, de Carvalho MG, Murilo Zerbini F (2006) Cowpea aphid-borne mosaic virus (CABMV) is widespread in passionfruit in Brazil and causes passion fruit woodiness disease. Arch Virol 151:1797-1809
8. Roossinck MJ, Saha P, Wiley GB, Quan J, White JD, Lai H, Chavarría F, Shen G, Roe BA (2010) Ecogenomics: using massively parallel pyrosequencing to understand virus ecology. Mol Ecol 19(Suppl 1):81-88
9. Shukla DD, McKern NM, Ward CW (1988) Coat protein of potyviruses. 5. Symptomatology, serology, and coat protein sequences of three strains of passion fruit woodiness virus. Arch Virol 102:221-232
10. Sokhandan N, Gillings MR, Bowyer JW (1997) Polymerase chain reaction detection and assessment of genetic variation in New South Wales isolates of passionfruit woodiness potyvirus. Aust Plant Pathol 26:155-164
11. Tsibris AM, Korber B, Arnaout R, Russ C, Lo CC, Leitner T, Gaschen B, Theiler J, Paredes R, Su Z, Hughes MD, Gulick RM, Greaves W, Coakley E, Flexner C, Nusbaum C, Kuritzkes DR (2009) Quantitative deep sequencing reveals dynamic HIV-1 escape and large population shifts during CCR5 antagonist therapy in vivo. PLoS One 4:e5683
12. Webster C, Jones RAC, Coutts BA, Jones MGK, Wylie SJ (2007) Virus impact at the interface of an ancient ecosystem and a recent agroecosystem: studies on three legume-infecting potyviruses in the southwest Australian floristic region. Plant Pathol 56:729-742