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Volumn 57, Issue 3, 2011, Pages 244-249

Sequence analysis of rpoB and rpoD gene fragments reveals the phylogenetic diversity of actinobacteria of genus Frankia

Author keywords

16S rRNA; Biodiversity; Molecular tool; rpoB; rpoD

Indexed keywords

RNA 16S; RNA POLYMERASE BETA SUBUNIT;

EID: 79952211797     PISSN: 00084166     EISSN: 14803275     Source Type: Journal    
DOI: 10.1139/W10-106     Document Type: Note
Times cited : (6)

References (25)
  • 1
    • 58149305793 scopus 로고    scopus 로고
    • The rpoB gene as a tool for clinical microbiologists
    • doi:10.1016/j.tim.2008.09.008. PMID:19081723
    • Adékambi, T., Drancourt, M., and Raoult, D. 2009. The rpoB gene as a tool for clinical microbiologists. Trends Microbiol. 17(1): 37-45. doi:10.1016/j.tim.2008.09.008. PMID:19081723.
    • (2009) Trends Microbiol. , vol.17 , Issue.1 , pp. 37-45
    • Adékambi, T.1    Drancourt, M.2    Raoult, D.3
  • 2
    • 0018292482 scopus 로고
    • Isolation by sucrosedensity fractionation and cultivation in vitro of actinomycetes from nitrogen-fixing root nodules
    • doi:10.1038/281076a0
    • Baker, D., Torrey, J.G., and Kidd, G.H. 1979. Isolation by sucrosedensity fractionation and cultivation in vitro of actinomycetes from nitrogen-fixing root nodules. Nature, 281(5726): 76-78. doi:10.1038/281076a0.
    • (1979) Nature , vol.281 , Issue.5726 , pp. 76-78
    • Baker, D.1    Torrey, J.G.2    Kidd, G.H.3
  • 3
    • 0019065708 scopus 로고
    • Characterization of an ineffective actinorhizal microsymbiont, Frankia sp. EuI1 (Actinomycetales)
    • doi:10.1139/m80-180. PMID:7459722
    • Baker, D., Newcomb, W., and Torrey, J.G. 1980. Characterization of an ineffective actinorhizal microsymbiont, Frankia sp. EuI1 (Actinomycetales). Can. J. Microbiol. 26(9): 1072-1089. doi:10.1139/m80-180. PMID:7459722.
    • (1980) Can. J. Microbiol. , vol.26 , Issue.9 , pp. 1072-1089
    • Baker, D.1    Newcomb, W.2    Torrey, J.G.3
  • 4
    • 0017871215 scopus 로고
    • Isolation and cultivation in vitro of the actinomycete causing nodulation in Comptonia
    • doi:10.1126/science.199.4331.899. PMID:17757592
    • Callaham, D., Deltredici, P., and Torrey, J.G. 1978. Isolation and cultivation in vitro of the actinomycete causing nodulation in Comptonia. Science, 199(4331): 899-902. doi:10.1126/science.199.4331.899. PMID:17757592.
    • (1978) Science , vol.199 , Issue.4331 , pp. 899-902
    • Callaham, D.1    Deltredici, P.2    Torrey, J.G.3
  • 5
    • 33846131262 scopus 로고    scopus 로고
    • Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies
    • doi:10.1128/AEM.01177-06. PMID:17071787
    • Case, R.J., Boucher, Y., Dahllöf, I., Holmström, C., Doolittle, W.F., and Kjelleberg, S. 2007. Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies. Appl. Environ. Microbiol. 73(1): 278-288. doi:10.1128/AEM.01177-06. PMID:17071787.
    • (2007) Appl. Environ. Microbiol. , vol.73 , Issue.1 , pp. 278-288
    • Case, R.J.1    Boucher, Y.2    Dahllöf, I.3    Holmström, C.4    Doolittle, W.F.5    Kjelleberg, S.6
  • 6
    • 0031711117 scopus 로고    scopus 로고
    • Diversity of Frankia strains in root nodules of plants from the families Elaeagnaceae and Rhamnaceae
    • PMID:9726914
    • Clawson, M.L., Carú, M., and Benson, D.R. 1998. Diversity of Frankia strains in root nodules of plants from the families Elaeagnaceae and Rhamnaceae. Appl. Environ. Microbiol. 64(9): 3539-3543. PMID:9726914.
    • (1998) Appl. Environ. Microbiol. , vol.64 , Issue.9 , pp. 3539-3543
    • Clawson, M.L.1    Carú, M.2    Benson, D.R.3
  • 7
    • 0033860832 scopus 로고    scopus 로고
    • rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity
    • doi:10.1128/AEM.66.8.3376-3380.2000. PMID:10919794
    • Dahllöf, I., Baillie, H., and Kjelleberg, S. 2000. rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity. Appl. Environ. Microbiol. 66(8): 3376-3380. doi:10.1128/AEM.66.8.3376-3380.2000. PMID:10919794.
    • (2000) Appl. Environ. Microbiol. , vol.66 , Issue.8 , pp. 3376-3380
    • Dahllöf, I.1    Baillie, H.2    Kjelleberg, S.3
  • 8
    • 0001386047 scopus 로고
    • The isolation of Frankia from nodules of Casuarina
    • doi:10.1139/b83-313
    • Diem, H.G., and Dommergues, Y. 1983. The isolation of Frankia from nodules of Casuarina. Can. J. Bot. 61(11): 2822-2825. doi:10.1139/b83-313.
    • (1983) Can. J. Bot. , vol.61 , Issue.11 , pp. 2822-2825
    • Diem, H.G.1    Dommergues, Y.2
  • 9
    • 77955255556 scopus 로고    scopus 로고
    • Polyphasic taxonomy of the genus Frankia
    • In, Edited by K. Pawlowski and W.E. Newton. Springer, Dordrecht, Netherlands
    • Hahn, D. 2008. Polyphasic taxonomy of the genus Frankia. In Nitrogen-fixing actinorhizal symbioses. Edited by K. Pawlowski and W.E. Newton. Springer, Dordrecht, Netherlands. pp. 25-47.
    • (2008) Nitrogen-fixing actinorhizal symbioses , pp. 25-47
    • Hahn, D.1
  • 10
    • 0242405650 scopus 로고    scopus 로고
    • Usefulness of rpoB gene sequencing for identification of Afipia and Bosea species, including a strategy for choosing discriminative partial sequences
    • doi:10.1128/AEM.69.11.6740-6749.2003. PMID:14602635
    • Khamis, A., Colson, P., Raoult, D., and Scola, B.L. 2003. Usefulness of rpoB gene sequencing for identification of Afipia and Bosea species, including a strategy for choosing discriminative partial sequences. Appl. Environ. Microbiol. 69(11): 6740-6749. doi:10.1128/AEM.69.11.6740-6749.2003. PMID:14602635.
    • (2003) Appl. Environ. Microbiol. , vol.69 , Issue.11 , pp. 6740-6749
    • Khamis, A.1    Colson, P.2    Raoult, D.3    Scola, B.L.4
  • 11
    • 0346097983 scopus 로고    scopus 로고
    • Differentiation of actinomycete genera based on partial rpoB gene sequences
    • Kim, B.J., Koh, Y.H., Chun, J., Kim, C.J., Lee, S.H., Cho, M., et al. 2003. Differentiation of actinomycete genera based on partial rpoB gene sequences. J. Microbiol. Biotechnol. 13: 846-852.
    • (2003) J. Microbiol. Biotechnol. , vol.13 , pp. 846-852
    • Kim, B.J.1    Koh, Y.H.2    Chun, J.3    Kim, C.J.4    Lee, S.H.5    Cho, M.6
  • 12
    • 0002506986 scopus 로고
    • Isolation and use of Frankia strains in actinorhizae formation
    • In, Edited by A.H. Gibson and W.E. Newton. Australian Academy of Science, Canberra, Australia
    • Lalonde, M., Calvert, H.E., and Pine, S. 1981. Isolation and use of Frankia strains in actinorhizae formation. In Current perspectives in nitrogen fixation. Edited by A.H. Gibson and W.E. Newton. Australian Academy of Science, Canberra, Australia. pp. 296-299.
    • (1981) Current perspectives in nitrogen fixation , pp. 296-299
    • Lalonde, M.1    Calvert, H.E.2    Pine, S.3
  • 13
    • 0033495438 scopus 로고    scopus 로고
    • Polymerase chain reaction -restriction fragment length polymorphisms for assessing and increasing biodiversity of Frankia culture collections
    • doi:10.1139/cjb-77-9-1261
    • Lumini, E., and Bosco, M. 1999. Polymerase chain reaction -restriction fragment length polymorphisms for assessing and increasing biodiversity of Frankia culture collections. Can. J. Bot. 77(9): 1261-1269. doi:10.1139/cjb-77-9-1261.
    • (1999) Can. J. Bot. , vol.77 , Issue.9 , pp. 1261-1269
    • Lumini, E.1    Bosco, M.2
  • 14
    • 0342749300 scopus 로고    scopus 로고
    • A recA gene phylogenetic analysis confirms the close proximity of Frankia to Acidothermus
    • PMID:10758889
    • Maréchal, J., Clement, B., Nalin, R., Gandon, C., Orso, S., Cvejic, J.H., et al. 2000. A recA gene phylogenetic analysis confirms the close proximity of Frankia to Acidothermus. Int. J. Syst. Evol. Microbiol. 50(Pt 2): 781-785. PMID:10758889.
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , Issue.PART 2 , pp. 781-785
    • Maréchal, J.1    Clement, B.2    Nalin, R.3    Gandon, C.4    Orso, S.5    Cvejic, J.H.6
  • 15
    • 70449722880 scopus 로고    scopus 로고
    • Diversity of frankiae in soils from five continents
    • doi:10.1016/j.syapm.2009.07.008. PMID:19692194
    • Mirza, B.S., Welsh, A., Rieder, J.P., Paschke, M.W., and Hahn, D. 2009. Diversity of frankiae in soils from five continents. Syst. Appl. Microbiol. 32(8): 558-570. doi:10.1016/j.syapm.2009.07.008. PMID:19692194.
    • (2009) Syst. Appl. Microbiol. , vol.32 , Issue.8 , pp. 558-570
    • Mirza, B.S.1    Welsh, A.2    Rieder, J.P.3    Paschke, M.W.4    Hahn, D.5
  • 16
    • 43249126756 scopus 로고    scopus 로고
    • Host range of Frankia strains isolated from actinorhizal plants growing in Japan and their relatedness based on 16S rDNA
    • Nagashima, Y., Tani, C., Yamamoto, M., and Sasakawa, H. 2008. Host range of Frankia strains isolated from actinorhizal plants growing in Japan and their relatedness based on 16S rDNA. Soil Sci. Plant Nutr. 54: 686-693.
    • (2008) Soil Sci. Plant Nutr. , vol.54 , pp. 686-693
    • Nagashima, Y.1    Tani, C.2    Yamamoto, M.3    Sasakawa, H.4
  • 17
    • 0030907368 scopus 로고    scopus 로고
    • The nodular microsymbionts of Gymnostoma spp. are Elaeagnusinfective Frankia strains
    • PMID:9097456
    • Navarro, E., Nalin, R., Gauthier, D., and Normand, P. 1997. The nodular microsymbionts of Gymnostoma spp. are Elaeagnusinfective Frankia strains. Appl. Environ. Microbiol. 63(4): 1610-1616. PMID:9097456.
    • (1997) Appl. Environ. Microbiol. , vol.63 , Issue.4 , pp. 1610-1616
    • Navarro, E.1    Nalin, R.2    Gauthier, D.3    Normand, P.4
  • 18
    • 70350704305 scopus 로고    scopus 로고
    • The families Frankiaceae, Geodermatophilaceae, Acidothermaceae and Sporichthyaceae
    • In, Edited by M. Dworkin. Springer, Dordrecht, Netherlands
    • Normand, P. 2006. The families Frankiaceae, Geodermatophilaceae, Acidothermaceae and Sporichthyaceae. In Prokaryotes. Edited by M. Dworkin. Springer, Dordrecht, Netherlands. pp. 669-681.
    • (2006) Prokaryotes , pp. 669-681
    • Normand, P.1
  • 19
    • 0000614499 scopus 로고
    • Evaluation of Frankia strains isolated from provenances of two Alnus species
    • doi:10.1139/m82-168
    • Normand, P., and Lalonde, M. 1982. Evaluation of Frankia strains isolated from provenances of two Alnus species. Can. J. Microbiol. 28(10): 1133-1142. doi:10.1139/m82-168.
    • (1982) Can. J. Microbiol. , vol.28 , Issue.10 , pp. 1133-1142
    • Normand, P.1    Lalonde, M.2
  • 21
    • 0030068438 scopus 로고    scopus 로고
    • Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae
    • doi:10.1099/00207713-46-1-1. PMID:8573482
    • Normand, P., Orso, S., Cournoyer, B., Jeannin, P., Chapelon, C., Dawson, J., et al. 1996. Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae. Int. J. Syst. Bacteriol. 46(1): 1-9. doi:10.1099/00207713-46-1-1. PMID:8573482.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , Issue.1 , pp. 1-9
    • Normand, P.1    Orso, S.2    Cournoyer, B.3    Jeannin, P.4    Chapelon, C.5    Dawson, J.6
  • 23
    • 34547918000 scopus 로고    scopus 로고
    • Combining alders, frankiae, and mycorrhizae for soil remediation and revegetation of contaminated ecosystems
    • doi:10.1139/B07-017
    • Roy, S., Khasa, D.P., and Greer, C.W. 2007. Combining alders, frankiae, and mycorrhizae for soil remediation and revegetation of contaminated ecosystems. Can. J. Bot. 85(3): 237-251. doi:10.1139/B07-017.
    • (2007) Can. J. Bot. , vol.85 , Issue.3 , pp. 237-251
    • Roy, S.1    Khasa, D.P.2    Greer, C.W.3
  • 24
    • 0027509645 scopus 로고
    • Structure of the 16 S ribosomal RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF ('Mastigocladus laminosus HTF') strain PCC7518, and phylogenetic analysis
    • doi:10.1016/0014-5793(93)81499-P. PMID: 8428640
    • Wilmotte, A., Van der Auwera, G., and De Wachter, R. 1993. Structure of the 16 S ribosomal RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF ('Mastigocladus laminosus HTF') strain PCC7518, and phylogenetic analysis. FEBS Lett. 317(1-2): 96-100. doi:10.1016/0014-5793(93)81499-P. PMID: 8428640.
    • (1993) FEBS Lett. , vol.317 , Issue.1-2 , pp. 96-100
    • Wilmotte, A.1    van der Auwera, G.2    de Wachter, R.3
  • 25
    • 0002462056 scopus 로고
    • A comparison of cultural characteristics and infectivity of Frankia isolates from root nodules of Casuarina species
    • doi:10.1007/BF02277841
    • Zhang, Z., Lopez, M., and Torrey, J.G. 1984. A comparison of cultural characteristics and infectivity of Frankia isolates from root nodules of Casuarina species. Plant Soil, 78(1-2): 79-90. doi:10.1007/BF02277841.
    • (1984) Plant Soil , vol.78 , Issue.1-2 , pp. 79-90
    • Zhang, Z.1    Lopez, M.2    Torrey, J.G.3


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