Identification of two novel equine papillomavirus sequences suggests three genera in one cluster

Veterinary Microbiology

Volumn 149, Issue 1-2, 2011, Pages 85-90

  Lange, Christian E ^a   Tobler, Kurt ^a   Ackermann, Mathias ^a   Favrot, Claude ^a  

^a VETSUISSE FACULTY UNIVERSITY OF ZURICH   (Switzerland)

Author keywords

Equine ear papillomas; Equine genital papillomas; Horse; Papillomavirus; Phylogenetic analysis

Indexed keywords

VIRUS DNA;

ARTICLE; CLONE; EAR; GENE IDENTIFICATION; GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PAPILLOMA; PAPILLOMA VIRUS; PENIS; PHYLOGENY; VIRUS GENE; VIRUS IDENTIFICATION;

ANIMALS; CLUSTER ANALYSIS; DNA, VIRAL; GENOME, VIRAL; HORSE DISEASES; HORSES; MALE; OPEN READING FRAMES; PAPILLOMA; PAPILLOMAVIRIDAE; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

EQUIDAE; PAPILLOMAVIRIDAE;

EID: 79952183862     PISSN: 03781135     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.vetmic.2010.10.019     Document Type: Article

References (28)

1. Androphy E., Lowy D., Schiller J. Bovine papillomavirus E2 trans-activating gene product binds to specific sites in papillomavirus DNA. Nature 1987, 325:70-73.
2. Antonsson A., Forslund O., Ekberg H., Sterner G., Hansson B. The ubiquity and impressive genomic diversity of human skin papillomaviruses suggest a commensalic nature of these viruses. J. Virol. 2000, 74:11636-11641.
3. Antonsson A., Hansson B. Healthy skin of many animal species harbors papillomaviruses which are closely related to their human counterparts. J. Virol. 2002, 76:12537-12542.
4. Bennett M.D., Reiss A., Stevens H., Heylen E., Van Ranst M., Wayne A., Slaven M., Mills J.N., Warren K.S., O'Hara A.J., Nicholls P.K. The First complete papillovirus genome characterized from a marsupial host: a novel isolate from Bettongia penicillata. J. Virol. 2010, 84:5448-5453.
5. Bernard H., Burk R., Chen Z., van Doorslaer K., Hausen H., de Villiers E. Classification of papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments. Virology 2010, 401:70-79.
6. Bogaert L., Martens A., Van Poucke M., Ducatelle R., De Cock H., Dewulf J., De Baere C., Peelman L., Gasthuys F. High prevalence of bovine papillomaviral DNA in the normal skin of equine sarcoid-affected and healthy horses. Vet. Microbiol. 2008, 129:58-68.
7. Bosch F., Manos M., Muñoz N., Sherman M., Jansen A., Peto J., Schiffman M., Moreno V., Kurman R., Shah K. Prevalence of human papillomavirus in cervical cancer: a worldwide perspective. International biological study on cervical cancer, IBSCC. Study group. J. Natl. Cancer Inst. 1995, 87:796-802.
8. Burd E. Human papillomavirus and cervical cancer. Clin. Microbiol. Rev. 2003, 16:1-17.
9. Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 2000, 17:540-552.
10. de Villiers E., Fauquet C., Broker T., Bernard H., zur Hausen H. Classification of papillomaviruses. Virology 2004, 324:17-27.
11. Drummond A., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
12. Erdélyi K., Bálint Á., Dencsá L., Dán Á., Ursu K. Characterisation of the first complete genome sequence of the roe deer (Capreolus capreolus) papillomavirus. Virus Res. 2008, 135:307-311.
13. Fairley R., Haines D. The electron microscopic and immunohistochemical demonstration of a papillomavirus in equine aural plaques. Vet. Pathol. 1992, 29:79-81.
14. Garcia-Vallve S., Alonso A., Bravo I.G. Papillomaviruses: different genes have different histories. Trends Microbiol. 2005, 13:514-521.
15. Ghim S., Rector A., Delius H., Sundberg J., Jenson A., Van Ranst M. Equine papillomavirus type 1: complete nucleotide sequence and characterization of recombinant virus-like particles composed of the EcPV-1 L1 major capsid protein. Biochem. Biophys. Res Commun. 2004, 324:1108-1115.
16. Howley P.M., Lowy D.R. Papillomaviruses. Fields Virology 2007, 2299-2354. Lippincott Williams & Wikins, Philadelphia. D.M. Knipe, P.M. Howley (Eds.).
17. Katoh K., Toh H. Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform. 2008, 9:286-298.
18. Lorincz A., Reid R., Jenson A., Greenberg M., Lancaster W., Kurman R. Human papillomavirus infection of the cervix: relative risk associations of 15 common anogenital types. Obstet. Gynecol. 1992, 79:328-337.
19. Muñoz N., Bosch F., de Sanjosé S., Herrero R., Castellsagué X., Shah K., Snijders P., Meijer C. Epidemiologic classification of human papillomavirus types associated with cervical cancer. N. Engl. J. Med. 2003, 348:518-527. I.A.f.R.o.C.M.C.C.S. Group.
20. Münger K., Baldwin A., Edwards K., Hayakawa H., Nguyen C., Owens M., Grace M., Huh K. Mechanisms of human papillomavirus-induced oncogenesis. J. Virol. 2004, 78:11451-11460.
21. Nasir L., Campo M. Bovine papillomaviruses: their role in the aetiology of cutaneous tumours of bovids and equids. Vet. Dermatol. 2008, 19:243-254.
22. O'Banion M., Reichmann M., Sundberg J. Cloning and characterization of an equine cutaneous papillomavirus. Virology 1986, 152:100-109.
23. Posada D., Crandall K. MODELTEST: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
24. Rector A., Tachezy R., Van Ranst M.A. Sequence independant strategy for detection and cloning of circular DNA virus genome by using multiply primed rolling circle amplification. J. Virol. 2004, 78:1993-1998.
25. Ronquist F., Huelsenbeck J. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
26. Scott D.W., Miller W.H. Equine Dermatology 2003, Saunders, St. Louis, pp. 700-712.
27. Smith M.A., Levine D.G., Getman L.M., Parente E.J., Engiles J.B. Vulvar squamous cell carcinoma in situ within viral papillomas in an aged Quarter Horse mare. Equine Vet. Educ. 2009, 21:11-16.
28. Wilson V., West M., Woytek K., Rangasamy D. Papillomavirus E1 proteins: form, function, and features. Virus Genes 2002, 24:275-290.