Structure of an RNA dimer of a regulatory element from human thymidylate synthase mRNA

Acta Crystallographica Section D: Biological Crystallography

Volumn 67, Issue 2, 2011, Pages 97-104

  Dibrov, Sergey ^a   McLean, Jaime ^a   Hermann, Thomas ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

RNA structure; thymidylate synthase mRNA; translation regulation

Indexed keywords

MESSENGER RNA; THYMIDYLATE SYNTHASE;

ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; DIMERIZATION; HUMAN; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; REGULATORY SEQUENCE; X RAY CRYSTALLOGRAPHY;

BASE SEQUENCE; BINDING SITES; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; HUMANS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; REGULATORY ELEMENTS, TRANSCRIPTIONAL; RNA, MESSENGER; THYMIDYLATE SYNTHASE;

EID: 79952138382     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444910050900     Document Type: Article

References (17)

1. Adams P. D., Grosse-Kunstleve R. W., Hung L.-W., Ioerger T. R., McCoy A. J., Moriarty N. W., Read R. J., Sacchettini J. C., Sauter N. K. & Terwilliger T. C. (2002). Acta Cryst. D58 1948-1954.
2. Bevilacqua P. C. & Blose J. M. (2008). Annu. Rev. Phys. Chem. 59 79-103.
3. Brunger A. T. (2007). Nature Protoc. 2 2728-2733.
4. Brünger A. T., Adams P. D., Clore G. M., DeLano W. L., Gros P., Grosse-Kunstleve R. W., Jiang J.-S., Kuszewski J., Nilges M., Pannu N. S., Read R. J., Rice L. M., Simonson T. &Warren G. L. (1998). Acta Cryst. D54 905-921.
5. Chu E., Callender M. A., Farrell M. P. & Schmitz J. C. (2003). Cancer Chemother. Pharmacol. 52 S80-S89.
6. Chu E., Koeller D. M., Casey J. L., Drake J. C., Chabner B. A., Elwood P. C., Zinn S. & Allegra C. J. (1991). Proc. Natl Acad. Sci. USA 88 8977-8981.
7. Chu E., Voeller D., Koeller D. M., Drake J. C., Takimoto C. H., Maley G. F., Maley F. & Allegra C. J. (1993). Proc. Natl Acad. Sci. USA 90 517-521.
8. Collaborative Computational Project Number 4 (1994). Acta Cryst. D50 760-763.
9. Emsley P. & Cowtan K. (2004). Acta Cryst. D60 2126-2132.
10. Ferré-DAmaré A. R. (2010). Methods 52 159-167.
11. Ferré-DAmaré A. R. & Doudna J. A. (2000). J. Mol. Biol. 295 541-556.
12. Hermann T. & Patel D. J. (1999). J. Mol. Biol. 294 829-849.
13. Holbrook S. R., Cheong C., Tinoco I. Jr & Kim S.-H. (1991). Nature (London) 353 579-581.
14. Kondo J., Francois B., Urzhumtsev A. & Westhof E. (2006). Angew. Chem. Int. Ed. Engl. 45 3310-3314.
15. Kondo J., Urzhumtsev A. & Westhof E. (2006). Nucleic Acids Res. 34 676-685.
16. Kondo J. & Westhof E. (2008). Nucleic Acids Res. 36 2654-2666.
17. Leontis N. B. & Westhof E. (2001). RNA 7 499-512.