-
2
-
-
0030693871
-
Re-emergence of potato and tomato late blight in the United States
-
Fry WE, Goodwin SB (1997) Re-emergence of potato and tomato late blight in the United States. Plant Dis 81: 1349-1357.
-
(1997)
Plant Dis
, vol.81
, pp. 1349-1357
-
-
Fry, W.E.1
Goodwin, S.B.2
-
3
-
-
13944270713
-
Largescale gene discovery in the oomycete Phytophthora infestans reveals likely components of phytopathogenicity shared with true fungi
-
Randall TA, Dwyer RA, Huitema E, Beyer K, Cvitanich C, et al. (2005) Largescale gene discovery in the oomycete Phytophthora infestans reveals likely components of phytopathogenicity shared with true fungi. Mol Plant Microbe Interact 18: 229-243.
-
(2005)
Mol Plant Microbe Interact
, vol.18
, pp. 229-243
-
-
Randall, T.A.1
Dwyer, R.A.2
Huitema, E.3
Beyer, K.4
Cvitanich, C.5
-
4
-
-
20644449033
-
Late Blight of Potato and Tomato in the Genomics Era
-
Kamoun S, Smart CD (2005) Late Blight of Potato and Tomato in the Genomics Era. Plant Dis 89: 692-699.
-
(2005)
Plant Dis
, vol.89
, pp. 692-699
-
-
Kamoun, S.1
Smart, C.D.2
-
5
-
-
20644441182
-
An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognized in the host cytoplasm
-
Armstrong MR, Whisson SC, Pritchard L, Bos JI, Venter E, et al. (2005) An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognized in the host cytoplasm. Proc Natl Acad Sci U S A 102: 7766-7771.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 7766-7771
-
-
Armstrong, M.R.1
Whisson, S.C.2
Pritchard, L.3
Bos, J.I.4
Venter, E.5
-
6
-
-
33748334490
-
A catalogue of the effector secretome of plant pathogenic oomycetes
-
Kamoun S (2006) A catalogue of the effector secretome of plant pathogenic oomycetes. Annu Rev Phytopathol 44: 41-60.
-
(2006)
Annu Rev Phytopathol
, vol.44
, pp. 41-60
-
-
Kamoun, S.1
-
7
-
-
0037963480
-
EST mining and functional expression assays identify extracellular effector proteins from the plant pathogen Phytophthora
-
Torto TA, Li S, Styer A, Huitema E, Testa A, et al. (2003) EST mining and functional expression assays identify extracellular effector proteins from the plant pathogen Phytophthora. Genome Res 13: 1675-1685.
-
(2003)
Genome Res
, vol.13
, pp. 1675-1685
-
-
Torto, T.A.1
Li, S.2
Styer, A.3
Huitema, E.4
Testa, A.5
-
8
-
-
33646906197
-
The malarial host-targeting signal is conserved in the Irish potato famine pathogen
-
Bhattacharjee S, Hiller NL, Liolios K, Win J, Kanneganti TD, et al. (2006) The malarial host-targeting signal is conserved in the Irish potato famine pathogen. PLoS Pathog 2: e50.
-
(2006)
PLoS Pathog
, vol.2
-
-
Bhattacharjee, S.1
Hiller, N.L.2
Liolios, K.3
Win, J.4
Kanneganti, T.D.5
-
9
-
-
30344460509
-
Trafficking arms: Oomycete effectors enter host plant cells
-
Birch PR, Rehmany AP, Pritchard L, Kamoun S, Beynon JL (2006) Trafficking arms: oomycete effectors enter host plant cells. Trends Microbiol 14: 8-11.
-
(2006)
Trends Microbiol
, vol.14
, pp. 8-11
-
-
Birch, P.R.1
Rehmany, A.P.2
Pritchard, L.3
Kamoun, S.4
Beynon, J.L.5
-
10
-
-
33749264793
-
The Cterminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana
-
Bos JI, Kanneganti TD, Young C, Cakir C, Huitema E, et al. (2006) The Cterminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana. Plant J 48: 165-176.
-
(2006)
Plant J
, vol.48
, pp. 165-176
-
-
Bos, J.I.1
Kanneganti, T.D.2
Young, C.3
Cakir, C.4
Huitema, E.5
-
11
-
-
70349281388
-
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
-
Haas BJ, Kamoun S, Zody MC, Jiang RH, Handsaker RE, et al. (2009) Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature 461: 393-398.
-
(2009)
Nature
, vol.461
, pp. 393-398
-
-
Haas, B.J.1
Kamoun, S.2
Zody, M.C.3
Jiang, R.H.4
Handsaker, R.E.5
-
12
-
-
42449116668
-
RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members
-
Jiang RH, Tripathy S, Govers F, Tyler BM (2008) RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members. Proc Natl Acad Sci U S A 105: 4874-4879.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 4874-4879
-
-
Jiang, R.H.1
Tripathy, S.2
Govers, F.3
Tyler, B.M.4
-
13
-
-
42149127056
-
Gene expression profiling during asexual development of the late blight pathogen Phytophthora infestans reveals a highly dynamic transcriptome
-
Judelson HS, Ah-Fong AM, Aux G, Avrova AO, Bruce C, et al. (2008) Gene expression profiling during asexual development of the late blight pathogen Phytophthora infestans reveals a highly dynamic transcriptome. Mol Plant Microbe Interact 21: 433-447.
-
(2008)
Mol Plant Microbe Interact
, vol.21
, pp. 433-447
-
-
Judelson, H.S.1
Ah-Fong, A.M.2
Aux, G.3
Avrova, A.O.4
Bruce, C.5
-
15
-
-
55549143348
-
The Phytophthora infestans Avirulence Gene Avr4 Encodes an RXLR-dEER Effector
-
van Poppel PM, Guo J, van de Vondervoort PJ, Jung MW, Birch PR, et al. (2008) The Phytophthora infestans Avirulence Gene Avr4 Encodes an RXLR-dEER Effector. Mol Plant Microbe Interact 21: 1460-1470.
-
(2008)
Mol Plant Microbe Interact
, vol.21
, pp. 1460-1470
-
-
van Poppel, P.M.1
Guo, J.2
van de Vondervoort, P.J.3
Jung, M.W.4
Birch, P.R.5
-
16
-
-
51449083554
-
Effector genomics accelerates discovery and functional profiling of potato disease resistance and Phytophthora infestans avirulence genes
-
Vleeshouwers VG, Rietman H, Krenek P, Champouret N, Young C, et al. (2008) Effector genomics accelerates discovery and functional profiling of potato disease resistance and Phytophthora infestans avirulence genes. PLoS ONE 3: e2875.
-
(2008)
PLoS ONE
, vol.3
-
-
Vleeshouwers, V.G.1
Rietman, H.2
Krenek, P.3
Champouret, N.4
Young, C.5
-
17
-
-
35948991117
-
A translocation signal for delivery of oomycete effector proteins into host plant cells
-
Whisson SC, Boevink PC, Moleleki L, Avrova AO, Morales JG, et al. (2007) A translocation signal for delivery of oomycete effector proteins into host plant cells. Nature 450: 115-118.
-
(2007)
Nature
, vol.450
, pp. 115-118
-
-
Whisson, S.C.1
Boevink, P.C.2
Moleleki, L.3
Avrova, A.O.4
Morales, J.G.5
-
18
-
-
35348915452
-
Adaptive Evolution Has Targeted the C-Terminal Domain of the RXLR Effectors of Plant Pathogenic Oomycetes
-
Win J, Morgan W, Bos J, Krasileva KV, Cano LM, et al. (2007) Adaptive Evolution Has Targeted the C-Terminal Domain of the RXLR Effectors of Plant Pathogenic Oomycetes. Plant Cell 19: 2349-2369.
-
(2007)
Plant Cell
, vol.19
, pp. 2349-2369
-
-
Win, J.1
Morgan, W.2
Bos, J.3
Krasileva, K.V.4
Cano, L.M.5
-
19
-
-
29844450483
-
Computational and comparative analyses of 150 full-length cDNA sequences from the oomycete plant pathogen Phytophthora infestans
-
Win J, Kanneganti TD, Torto-Alalibo T, Kamoun S (2006) Computational and comparative analyses of 150 full-length cDNA sequences from the oomycete plant pathogen Phytophthora infestans. Fungal Genet Biol 43: 20-33.
-
(2006)
Fungal Genet Biol
, vol.43
, pp. 20-33
-
-
Win, J.1
Kanneganti, T.D.2
Torto-Alalibo, T.3
Kamoun, S.4
-
20
-
-
34547221947
-
Groovy times: Filamentous pathogen effectors revealed
-
Kamoun S (2007) Groovy times: filamentous pathogen effectors revealed. Curr Opin Plant Biol 10: 358-365.
-
(2007)
Curr Opin Plant Biol
, vol.10
, pp. 358-365
-
-
Kamoun, S.1
-
21
-
-
70350739115
-
Ten things to know about oomycete effectors
-
Schornack S, Huitema E, Cano LM, Bozkurt TO, Oliva R, et al. (2009) Ten things to know about oomycete effectors. Mol Plant Pathol 10: 795-803.
-
(2009)
Mol Plant Pathol
, vol.10
, pp. 795-803
-
-
Schornack, S.1
Huitema, E.2
Cano, L.M.3
Bozkurt, T.O.4
Oliva, R.5
-
22
-
-
12244291895
-
Comparative analyses of potato expressed sequence tag libraries
-
Ronning CM, Stegalkina SS, Ascenzi RA, Bougri O, Hart AL, et al. (2003) Comparative analyses of potato expressed sequence tag libraries. Plant Physiol 131: 419-429.
-
(2003)
Plant Physiol
, vol.131
, pp. 419-429
-
-
Ronning, C.M.1
Stegalkina, S.S.2
Ascenzi, R.A.3
Bougri, O.4
Hart, A.L.5
-
23
-
-
70849118840
-
In planta expression screens of Phytophthora infestans RXLR effectors reveal diverse phenotypes, including activation of the Solanum bulbocastanum disease resistance protein Rpi-blb2
-
Oh SK, Young C, Lee M, Oliva R, Bozkurt TO, et al. (2009) In planta expression screens of Phytophthora infestans RXLR effectors reveal diverse phenotypes, including activation of the Solanum bulbocastanum disease resistance protein Rpi-blb2. Plant Cell 21: 2928-2947.
-
(2009)
Plant Cell
, vol.21
, pp. 2928-2947
-
-
Oh, S.K.1
Young, C.2
Lee, M.3
Oliva, R.4
Bozkurt, T.O.5
-
24
-
-
0032849859
-
CAP3: A DNA sequence assembly program
-
Huang X, Madan A (1999) CAP3: A DNA sequence assembly program. Genome Res 9: 868-877.
-
(1999)
Genome Res
, vol.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
25
-
-
33745617710
-
A fast and symmetric DUST implementation to mask low-complexity DNA sequences
-
Morgulis A, Gertz EM, Schaffer AA, Agarwala R (2006) A fast and symmetric DUST implementation to mask low-complexity DNA sequences. J Comput Biol 13: 1028-1040.
-
(2006)
J Comput Biol
, vol.13
, pp. 1028-1040
-
-
Morgulis, A.1
Gertz, E.M.2
Schaffer, A.A.3
Agarwala, R.4
-
26
-
-
0037460985
-
TIGR Gene Indices clustering tools (TGICL): A software system for fast clustering of large EST datasets
-
Pertea G, Huang X, Liang F, Antonescu V, Sultana R, et al. (2003) TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 19: 651-652.
-
(2003)
Bioinformatics
, vol.19
, pp. 651-652
-
-
Pertea, G.1
Huang, X.2
Liang, F.3
Antonescu, V.4
Sultana, R.5
-
27
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
28
-
-
0034201441
-
EMBOSS: The European Molecular Biology Open Software Suite
-
Rice P, Longden I, Bleasby A (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16: 276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
29
-
-
38549097071
-
The Universal Protein Resource (UniProt)
-
UniProt Consortium
-
UniProt Consortium (2008) The Universal Protein Resource (UniProt). Nucleic Acids Res 36: D190-195.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
-
30
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
31
-
-
58349111875
-
AmiGO: Online access to ontology and annotation data
-
Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, et al. (2009) AmiGO: online access to ontology and annotation data. Bioinformatics 25: 288-289.
-
(2009)
Bioinformatics
, vol.25
, pp. 288-289
-
-
Carbon, S.1
Ireland, A.2
Mungall, C.J.3
Shu, S.4
Marshall, B.5
-
33
-
-
69649109364
-
Circos: An information aesthetic for comparative genomics
-
Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, et al. (2009) Circos: an information aesthetic for comparative genomics. Genome Res 19: 1639-1645.
-
(2009)
Genome Res
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
-
34
-
-
67649159262
-
EDGAR: A software framework for the comparative analysis of prokaryotic genomes
-
Blom J, Albaum S, Doppmeier D, Puhler A, Vorholter F, et al. (2009) EDGAR: A software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics 10: 154.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 154
-
-
Blom, J.1
Albaum, S.2
Doppmeier, D.3
Puhler, A.4
Vorholter, F.5
-
35
-
-
34548656951
-
RXLR effectors of plant pathogenic oomycetes
-
Morgan W, Kamoun S (2007) RXLR effectors of plant pathogenic oomycetes. Curr Opin Microbiol 10: 332-338.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 332-338
-
-
Morgan, W.1
Kamoun, S.2
-
36
-
-
1542758517
-
Combined ESTs from plantmicrobe interactions: Using GC counting to determine the species of origin
-
Huitema E, Torto TA, Styer A, Kamoun S (2003) Combined ESTs from plantmicrobe interactions: using GC counting to determine the species of origin. Methods Mol Biol 236: 79-84.
-
(2003)
Methods Mol Biol
, vol.236
, pp. 79-84
-
-
Huitema, E.1
Torto, T.A.2
Styer, A.3
Kamoun, S.4
-
37
-
-
65249092008
-
Comparative cDNA-AFLP analysis reveals that DL-Beta-amino-butyric acid induces resistance through early activation of the host-defense genes in potato
-
Li Y, Tian Z, Liu J, Xie C (2009) Comparative cDNA-AFLP analysis reveals that DL-Beta-amino-butyric acid induces resistance through early activation of the host-defense genes in potato. Physiol Plant 136: 19-29.
-
(2009)
Physiol Plant
, vol.136
, pp. 19-29
-
-
Li, Y.1
Tian, Z.2
Liu, J.3
Xie, C.4
-
38
-
-
33749060202
-
Screening and expression analysis of Phytophthora infestans induced genes in potato leaves with horizontal resistance
-
Tian Z, Liu J, Wang B, Xie C (2006) Screening and expression analysis of Phytophthora infestans induced genes in potato leaves with horizontal resistance. Plant Cell Rep 25: 1094-1103.
-
(2006)
Plant Cell Rep
, vol.25
, pp. 1094-1103
-
-
Tian, Z.1
Liu, J.2
Wang, B.3
Xie, C.4
-
39
-
-
26844578068
-
Potato expressed sequence tag generation and analysis using standard and unique cDNA libraries
-
Flinn B, Rothwell C, Griffiths R, Lague M, DeKoeyer D, et al. (2005) Potato expressed sequence tag generation and analysis using standard and unique cDNA libraries. Plant Mol Biol 59: 407-433.
-
(2005)
Plant Mol Biol
, vol.59
, pp. 407-433
-
-
Flinn, B.1
Rothwell, C.2
Griffiths, R.3
Lague, M.4
DeKoeyer, D.5
-
40
-
-
2542560587
-
Analysis of differentially expressed genes in a susceptible and moderately resistant potato cultivar upon Phytophthora infestans infection
-
Ros B, Thummler F, Wenzel G (2004) Analysis of differentially expressed genes in a susceptible and moderately resistant potato cultivar upon Phytophthora infestans infection. Mol Plant Pathol 5: 191-201.
-
(2004)
Mol Plant Pathol
, vol.5
, pp. 191-201
-
-
Ros, B.1
Thummler, F.2
Wenzel, G.3
-
41
-
-
43149123785
-
Phytophthora infestans-triggered response of growth-and defense-related genes in potato cultivars with different levels of resistance under the influence of nitrogen availability
-
Ros B, Mohler V, Wenzel G, Thummler F (2008) Phytophthora infestans-triggered response of growth-and defense-related genes in potato cultivars with different levels of resistance under the influence of nitrogen availability. Physiol Plant 133: 386-396.
-
(2008)
Physiol Plant
, vol.133
, pp. 386-396
-
-
Ros, B.1
Mohler, V.2
Wenzel, G.3
Thummler, F.4
-
42
-
-
26444550674
-
Monitoring the expression patterns of potato genes associated with quantitative resistance to late blight during Phytophthora infestans infection using cDNA microarrays
-
Wang B, Liu J, Tian Z, Song B, Xie C (2005) Monitoring the expression patterns of potato genes associated with quantitative resistance to late blight during Phytophthora infestans infection using cDNA microarrays. Plant Sci 169: 1155-1167.
-
(2005)
Plant Sci
, vol.169
, pp. 1155-1167
-
-
Wang, B.1
Liu, J.2
Tian, Z.3
Song, B.4
Xie, C.5
-
43
-
-
0032950238
-
Isolation of Potato Genes That Are Induced During an Early Stage of the Hypersensitive Response to Phytophthora infestans
-
Birch PRJ, Avrova AO, Duncan JM, Lyon GD, Toth RL (1999) Isolation of Potato Genes That Are Induced During an Early Stage of the Hypersensitive Response to Phytophthora infestans. Mol Plant Microbe Interact 12: 356-361.
-
(1999)
Mol Plant Microbe Interact
, vol.12
, pp. 356-361
-
-
Birch, P.R.J.1
Avrova, A.O.2
Duncan, J.M.3
Lyon, G.D.4
Toth, R.L.5
-
44
-
-
0034920412
-
Identification of potato genes induced during colonization by Phytophthora infestans
-
Beyer K, Binder A, Boller T, Collinge M (2001) Identification of potato genes induced during colonization by Phytophthora infestans. Mol Plant Pathol 2: 125.
-
(2001)
Mol Plant Pathol
, vol.2
, pp. 125
-
-
Beyer, K.1
Binder, A.2
Boller, T.3
Collinge, M.4
-
45
-
-
0038011555
-
Differential gene expression in two potato lines differing in their resistance to Phytophthora infestans
-
Evers D, Ghislain M, Hausman JF, Dommes J (2003) Differential gene expression in two potato lines differing in their resistance to Phytophthora infestans. J Plant Physiol 160: 709-712.
-
(2003)
J Plant Physiol
, vol.160
, pp. 709-712
-
-
Evers, D.1
Ghislain, M.2
Hausman, J.F.3
Dommes, J.4
|