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Volumn 5, Issue 3, 2010, Pages

Discovery of Phytophthora infestans genes expressed in planta through mining of cDNA libraries

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CHROMOSOME MAP; EXPRESSED SEQUENCE TAG; GENE EXPRESSION REGULATION; GENE LIBRARY; GENETIC DATABASE; GENETIC PROCEDURES; GENETICS; GENOMICS; PHYTOPHTHORA INFESTANS; PLANT GENE; PLANT GENOME; PROBABILITY;

EID: 79952117533     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0009847     Document Type: Article
Times cited : (9)

References (45)
  • 2
    • 0030693871 scopus 로고    scopus 로고
    • Re-emergence of potato and tomato late blight in the United States
    • Fry WE, Goodwin SB (1997) Re-emergence of potato and tomato late blight in the United States. Plant Dis 81: 1349-1357.
    • (1997) Plant Dis , vol.81 , pp. 1349-1357
    • Fry, W.E.1    Goodwin, S.B.2
  • 3
    • 13944270713 scopus 로고    scopus 로고
    • Largescale gene discovery in the oomycete Phytophthora infestans reveals likely components of phytopathogenicity shared with true fungi
    • Randall TA, Dwyer RA, Huitema E, Beyer K, Cvitanich C, et al. (2005) Largescale gene discovery in the oomycete Phytophthora infestans reveals likely components of phytopathogenicity shared with true fungi. Mol Plant Microbe Interact 18: 229-243.
    • (2005) Mol Plant Microbe Interact , vol.18 , pp. 229-243
    • Randall, T.A.1    Dwyer, R.A.2    Huitema, E.3    Beyer, K.4    Cvitanich, C.5
  • 4
    • 20644449033 scopus 로고    scopus 로고
    • Late Blight of Potato and Tomato in the Genomics Era
    • Kamoun S, Smart CD (2005) Late Blight of Potato and Tomato in the Genomics Era. Plant Dis 89: 692-699.
    • (2005) Plant Dis , vol.89 , pp. 692-699
    • Kamoun, S.1    Smart, C.D.2
  • 5
    • 20644441182 scopus 로고    scopus 로고
    • An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognized in the host cytoplasm
    • Armstrong MR, Whisson SC, Pritchard L, Bos JI, Venter E, et al. (2005) An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognized in the host cytoplasm. Proc Natl Acad Sci U S A 102: 7766-7771.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 7766-7771
    • Armstrong, M.R.1    Whisson, S.C.2    Pritchard, L.3    Bos, J.I.4    Venter, E.5
  • 6
    • 33748334490 scopus 로고    scopus 로고
    • A catalogue of the effector secretome of plant pathogenic oomycetes
    • Kamoun S (2006) A catalogue of the effector secretome of plant pathogenic oomycetes. Annu Rev Phytopathol 44: 41-60.
    • (2006) Annu Rev Phytopathol , vol.44 , pp. 41-60
    • Kamoun, S.1
  • 7
    • 0037963480 scopus 로고    scopus 로고
    • EST mining and functional expression assays identify extracellular effector proteins from the plant pathogen Phytophthora
    • Torto TA, Li S, Styer A, Huitema E, Testa A, et al. (2003) EST mining and functional expression assays identify extracellular effector proteins from the plant pathogen Phytophthora. Genome Res 13: 1675-1685.
    • (2003) Genome Res , vol.13 , pp. 1675-1685
    • Torto, T.A.1    Li, S.2    Styer, A.3    Huitema, E.4    Testa, A.5
  • 8
  • 10
    • 33749264793 scopus 로고    scopus 로고
    • The Cterminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana
    • Bos JI, Kanneganti TD, Young C, Cakir C, Huitema E, et al. (2006) The Cterminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana. Plant J 48: 165-176.
    • (2006) Plant J , vol.48 , pp. 165-176
    • Bos, J.I.1    Kanneganti, T.D.2    Young, C.3    Cakir, C.4    Huitema, E.5
  • 11
    • 70349281388 scopus 로고    scopus 로고
    • Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
    • Haas BJ, Kamoun S, Zody MC, Jiang RH, Handsaker RE, et al. (2009) Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature 461: 393-398.
    • (2009) Nature , vol.461 , pp. 393-398
    • Haas, B.J.1    Kamoun, S.2    Zody, M.C.3    Jiang, R.H.4    Handsaker, R.E.5
  • 12
    • 42449116668 scopus 로고    scopus 로고
    • RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members
    • Jiang RH, Tripathy S, Govers F, Tyler BM (2008) RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members. Proc Natl Acad Sci U S A 105: 4874-4879.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 4874-4879
    • Jiang, R.H.1    Tripathy, S.2    Govers, F.3    Tyler, B.M.4
  • 13
    • 42149127056 scopus 로고    scopus 로고
    • Gene expression profiling during asexual development of the late blight pathogen Phytophthora infestans reveals a highly dynamic transcriptome
    • Judelson HS, Ah-Fong AM, Aux G, Avrova AO, Bruce C, et al. (2008) Gene expression profiling during asexual development of the late blight pathogen Phytophthora infestans reveals a highly dynamic transcriptome. Mol Plant Microbe Interact 21: 433-447.
    • (2008) Mol Plant Microbe Interact , vol.21 , pp. 433-447
    • Judelson, H.S.1    Ah-Fong, A.M.2    Aux, G.3    Avrova, A.O.4    Bruce, C.5
  • 14
  • 16
    • 51449083554 scopus 로고    scopus 로고
    • Effector genomics accelerates discovery and functional profiling of potato disease resistance and Phytophthora infestans avirulence genes
    • Vleeshouwers VG, Rietman H, Krenek P, Champouret N, Young C, et al. (2008) Effector genomics accelerates discovery and functional profiling of potato disease resistance and Phytophthora infestans avirulence genes. PLoS ONE 3: e2875.
    • (2008) PLoS ONE , vol.3
    • Vleeshouwers, V.G.1    Rietman, H.2    Krenek, P.3    Champouret, N.4    Young, C.5
  • 17
    • 35948991117 scopus 로고    scopus 로고
    • A translocation signal for delivery of oomycete effector proteins into host plant cells
    • Whisson SC, Boevink PC, Moleleki L, Avrova AO, Morales JG, et al. (2007) A translocation signal for delivery of oomycete effector proteins into host plant cells. Nature 450: 115-118.
    • (2007) Nature , vol.450 , pp. 115-118
    • Whisson, S.C.1    Boevink, P.C.2    Moleleki, L.3    Avrova, A.O.4    Morales, J.G.5
  • 18
    • 35348915452 scopus 로고    scopus 로고
    • Adaptive Evolution Has Targeted the C-Terminal Domain of the RXLR Effectors of Plant Pathogenic Oomycetes
    • Win J, Morgan W, Bos J, Krasileva KV, Cano LM, et al. (2007) Adaptive Evolution Has Targeted the C-Terminal Domain of the RXLR Effectors of Plant Pathogenic Oomycetes. Plant Cell 19: 2349-2369.
    • (2007) Plant Cell , vol.19 , pp. 2349-2369
    • Win, J.1    Morgan, W.2    Bos, J.3    Krasileva, K.V.4    Cano, L.M.5
  • 19
    • 29844450483 scopus 로고    scopus 로고
    • Computational and comparative analyses of 150 full-length cDNA sequences from the oomycete plant pathogen Phytophthora infestans
    • Win J, Kanneganti TD, Torto-Alalibo T, Kamoun S (2006) Computational and comparative analyses of 150 full-length cDNA sequences from the oomycete plant pathogen Phytophthora infestans. Fungal Genet Biol 43: 20-33.
    • (2006) Fungal Genet Biol , vol.43 , pp. 20-33
    • Win, J.1    Kanneganti, T.D.2    Torto-Alalibo, T.3    Kamoun, S.4
  • 20
    • 34547221947 scopus 로고    scopus 로고
    • Groovy times: Filamentous pathogen effectors revealed
    • Kamoun S (2007) Groovy times: filamentous pathogen effectors revealed. Curr Opin Plant Biol 10: 358-365.
    • (2007) Curr Opin Plant Biol , vol.10 , pp. 358-365
    • Kamoun, S.1
  • 23
    • 70849118840 scopus 로고    scopus 로고
    • In planta expression screens of Phytophthora infestans RXLR effectors reveal diverse phenotypes, including activation of the Solanum bulbocastanum disease resistance protein Rpi-blb2
    • Oh SK, Young C, Lee M, Oliva R, Bozkurt TO, et al. (2009) In planta expression screens of Phytophthora infestans RXLR effectors reveal diverse phenotypes, including activation of the Solanum bulbocastanum disease resistance protein Rpi-blb2. Plant Cell 21: 2928-2947.
    • (2009) Plant Cell , vol.21 , pp. 2928-2947
    • Oh, S.K.1    Young, C.2    Lee, M.3    Oliva, R.4    Bozkurt, T.O.5
  • 24
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang X, Madan A (1999) CAP3: A DNA sequence assembly program. Genome Res 9: 868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 25
    • 33745617710 scopus 로고    scopus 로고
    • A fast and symmetric DUST implementation to mask low-complexity DNA sequences
    • Morgulis A, Gertz EM, Schaffer AA, Agarwala R (2006) A fast and symmetric DUST implementation to mask low-complexity DNA sequences. J Comput Biol 13: 1028-1040.
    • (2006) J Comput Biol , vol.13 , pp. 1028-1040
    • Morgulis, A.1    Gertz, E.M.2    Schaffer, A.A.3    Agarwala, R.4
  • 26
    • 0037460985 scopus 로고    scopus 로고
    • TIGR Gene Indices clustering tools (TGICL): A software system for fast clustering of large EST datasets
    • Pertea G, Huang X, Liang F, Antonescu V, Sultana R, et al. (2003) TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 19: 651-652.
    • (2003) Bioinformatics , vol.19 , pp. 651-652
    • Pertea, G.1    Huang, X.2    Liang, F.3    Antonescu, V.4    Sultana, R.5
  • 28
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • Rice P, Longden I, Bleasby A (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16: 276-277.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 29
    • 38549097071 scopus 로고    scopus 로고
    • The Universal Protein Resource (UniProt)
    • UniProt Consortium
    • UniProt Consortium (2008) The Universal Protein Resource (UniProt). Nucleic Acids Res 36: D190-195.
    • (2008) Nucleic Acids Res , vol.36
  • 30
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5
  • 34
    • 67649159262 scopus 로고    scopus 로고
    • EDGAR: A software framework for the comparative analysis of prokaryotic genomes
    • Blom J, Albaum S, Doppmeier D, Puhler A, Vorholter F, et al. (2009) EDGAR: A software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics 10: 154.
    • (2009) BMC Bioinformatics , vol.10 , pp. 154
    • Blom, J.1    Albaum, S.2    Doppmeier, D.3    Puhler, A.4    Vorholter, F.5
  • 35
    • 34548656951 scopus 로고    scopus 로고
    • RXLR effectors of plant pathogenic oomycetes
    • Morgan W, Kamoun S (2007) RXLR effectors of plant pathogenic oomycetes. Curr Opin Microbiol 10: 332-338.
    • (2007) Curr Opin Microbiol , vol.10 , pp. 332-338
    • Morgan, W.1    Kamoun, S.2
  • 36
    • 1542758517 scopus 로고    scopus 로고
    • Combined ESTs from plantmicrobe interactions: Using GC counting to determine the species of origin
    • Huitema E, Torto TA, Styer A, Kamoun S (2003) Combined ESTs from plantmicrobe interactions: using GC counting to determine the species of origin. Methods Mol Biol 236: 79-84.
    • (2003) Methods Mol Biol , vol.236 , pp. 79-84
    • Huitema, E.1    Torto, T.A.2    Styer, A.3    Kamoun, S.4
  • 37
    • 65249092008 scopus 로고    scopus 로고
    • Comparative cDNA-AFLP analysis reveals that DL-Beta-amino-butyric acid induces resistance through early activation of the host-defense genes in potato
    • Li Y, Tian Z, Liu J, Xie C (2009) Comparative cDNA-AFLP analysis reveals that DL-Beta-amino-butyric acid induces resistance through early activation of the host-defense genes in potato. Physiol Plant 136: 19-29.
    • (2009) Physiol Plant , vol.136 , pp. 19-29
    • Li, Y.1    Tian, Z.2    Liu, J.3    Xie, C.4
  • 38
    • 33749060202 scopus 로고    scopus 로고
    • Screening and expression analysis of Phytophthora infestans induced genes in potato leaves with horizontal resistance
    • Tian Z, Liu J, Wang B, Xie C (2006) Screening and expression analysis of Phytophthora infestans induced genes in potato leaves with horizontal resistance. Plant Cell Rep 25: 1094-1103.
    • (2006) Plant Cell Rep , vol.25 , pp. 1094-1103
    • Tian, Z.1    Liu, J.2    Wang, B.3    Xie, C.4
  • 39
    • 26844578068 scopus 로고    scopus 로고
    • Potato expressed sequence tag generation and analysis using standard and unique cDNA libraries
    • Flinn B, Rothwell C, Griffiths R, Lague M, DeKoeyer D, et al. (2005) Potato expressed sequence tag generation and analysis using standard and unique cDNA libraries. Plant Mol Biol 59: 407-433.
    • (2005) Plant Mol Biol , vol.59 , pp. 407-433
    • Flinn, B.1    Rothwell, C.2    Griffiths, R.3    Lague, M.4    DeKoeyer, D.5
  • 40
    • 2542560587 scopus 로고    scopus 로고
    • Analysis of differentially expressed genes in a susceptible and moderately resistant potato cultivar upon Phytophthora infestans infection
    • Ros B, Thummler F, Wenzel G (2004) Analysis of differentially expressed genes in a susceptible and moderately resistant potato cultivar upon Phytophthora infestans infection. Mol Plant Pathol 5: 191-201.
    • (2004) Mol Plant Pathol , vol.5 , pp. 191-201
    • Ros, B.1    Thummler, F.2    Wenzel, G.3
  • 41
    • 43149123785 scopus 로고    scopus 로고
    • Phytophthora infestans-triggered response of growth-and defense-related genes in potato cultivars with different levels of resistance under the influence of nitrogen availability
    • Ros B, Mohler V, Wenzel G, Thummler F (2008) Phytophthora infestans-triggered response of growth-and defense-related genes in potato cultivars with different levels of resistance under the influence of nitrogen availability. Physiol Plant 133: 386-396.
    • (2008) Physiol Plant , vol.133 , pp. 386-396
    • Ros, B.1    Mohler, V.2    Wenzel, G.3    Thummler, F.4
  • 42
    • 26444550674 scopus 로고    scopus 로고
    • Monitoring the expression patterns of potato genes associated with quantitative resistance to late blight during Phytophthora infestans infection using cDNA microarrays
    • Wang B, Liu J, Tian Z, Song B, Xie C (2005) Monitoring the expression patterns of potato genes associated with quantitative resistance to late blight during Phytophthora infestans infection using cDNA microarrays. Plant Sci 169: 1155-1167.
    • (2005) Plant Sci , vol.169 , pp. 1155-1167
    • Wang, B.1    Liu, J.2    Tian, Z.3    Song, B.4    Xie, C.5
  • 43
    • 0032950238 scopus 로고    scopus 로고
    • Isolation of Potato Genes That Are Induced During an Early Stage of the Hypersensitive Response to Phytophthora infestans
    • Birch PRJ, Avrova AO, Duncan JM, Lyon GD, Toth RL (1999) Isolation of Potato Genes That Are Induced During an Early Stage of the Hypersensitive Response to Phytophthora infestans. Mol Plant Microbe Interact 12: 356-361.
    • (1999) Mol Plant Microbe Interact , vol.12 , pp. 356-361
    • Birch, P.R.J.1    Avrova, A.O.2    Duncan, J.M.3    Lyon, G.D.4    Toth, R.L.5
  • 44
    • 0034920412 scopus 로고    scopus 로고
    • Identification of potato genes induced during colonization by Phytophthora infestans
    • Beyer K, Binder A, Boller T, Collinge M (2001) Identification of potato genes induced during colonization by Phytophthora infestans. Mol Plant Pathol 2: 125.
    • (2001) Mol Plant Pathol , vol.2 , pp. 125
    • Beyer, K.1    Binder, A.2    Boller, T.3    Collinge, M.4
  • 45
    • 0038011555 scopus 로고    scopus 로고
    • Differential gene expression in two potato lines differing in their resistance to Phytophthora infestans
    • Evers D, Ghislain M, Hausman JF, Dommes J (2003) Differential gene expression in two potato lines differing in their resistance to Phytophthora infestans. J Plant Physiol 160: 709-712.
    • (2003) J Plant Physiol , vol.160 , pp. 709-712
    • Evers, D.1    Ghislain, M.2    Hausman, J.F.3    Dommes, J.4


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