Genetic relationships of ethnic minorities in Southwest China revealed by microsatellite markers

PLoS ONE

Volumn 5, Issue 3, 2010, Pages

  Lin, Hongbin ^a,c   Fan, Hao ^b,d   Zhang, Feng ^a   Huang, Xiaoqin ^b   Lin, Keqin ^b   Shi, Lei ^b   Hu, Songnian ^a   Chu, Jiayou ^b   Wang, Duen Mei ^a  

^a Chinese Academy of Sciences and China National Center for Bioinformation   (China)

^b INSTITUTE OF MEDICAL BIOLOGY   (China)

^c UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^d KUNMING MEDICAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA;

ALLELE; ARTICLE; CHINA; CLUSTER ANALYSIS; FEMALE; GENOTYPE; GEOGRAPHY; HETEROZYGOTE; HUMAN; LINGUISTICS; MALE; MIGRATION; MINORITY GROUP; POPULATION GENETICS; PRINCIPAL COMPONENT ANALYSIS;

ALLELES; CHINA; CLUSTER ANALYSIS; EMIGRATION AND IMMIGRATION; FEMALE; GENETICS, POPULATION; GENOTYPE; GEOGRAPHY; HETEROZYGOTE; HUMANS; LINGUISTICS; MALE; MICROSATELLITE REPEATS; MINORITY GROUPS; PRINCIPAL COMPONENT ANALYSIS;

EID: 79952115251     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0009895     Document Type: Article

References (55)

1. Yang S (2003) Ethnography of China. Beijing: Central University for Nationalities Press.
2. Harrell S (2001) Ways of being ethnic in Southwest China. Seattle: University of Washington Press.
3. Guldin GE (1994) The saga of anthropology in China: from Malinowski to Moscow to Mao. Armonk, N.Y.: M.E. Sharpe.
4. Dai Q (1998) Twentieth century research on minority languages in China. Taiyuan: Shuhai Press.
5. Jin L, Seielstad M, Xiao C (2001) Genetic, linguistic and archaeological perspectives on human diversity in Southeast Asia. River EdgeNJ: World Scientific.
6. Jin L, Su B (2000) Natives or immigrants: modern human origin in East Asia. Nat Rev Genet 1: 126-133.
7. Chu JY, Huang W, Kuang SQ, Wang JM, Xu JJ, et al. (1998) Genetic relationship of populations in China. Proc Natl Acad Sci U S A 95: 11763-11768.
8. Karafet T, Xu L, Du R, Wang W, Feng S, et al. (2001) Paternal population history of East Asia: sources, patterns, and microevolutionary processes. Am J Hum Genet 69: 615-628.
9. Su B, Xiao J, Underhill P, Deka R, Zhang W, et al. (1999) Y-Chromosome evidence for a northward migration of modern humans into Eastern Asia during the last Ice Age. Am J Hum Genet 65: 1718-1724.
10. Yao YG, Nie L, Harpending H, Fu YX, Yuan ZG, et al. (2002) Genetic relationship of Chinese ethnic populations revealed by mtDNA sequence diversity. Am J Phys Anthropol 118: 63-76.
11. Yao YG, Kong QP, Bandelt HJ, Kivisild T, Zhang YP (2002) Phylogeographic differentiation of mitochondrial DNA in Han Chinese. Am J Hum Genet 70: 635-651.
12. Ding YC, Wooding S (2000) Population structure and history in East Asia. Proc Natl Acad Sci U S A. pp 14003-14006.
13. Deng W, Shi B, He X, Zhang Z, Xu J, et al. (2004) Evolution and migration history of the Chinese population inferred from Chinese Y-chromosome evidence. J Hum Genet 49: 339-348.
14. Cavalli-Sforza LL (1997) Genes, peoples, and languages. Proc Natl Acad Sci U S A 94: 7719-7724.
15. Cavalli-Sforza LL, Piazza A, Menozzi P, Mountain J (1988) Reconstruction of human evolution: bringing together genetic, archaeological and linguistic data. Proc Natl Acad Sci U S A 85: 6002-6006.
16. Pritchard JK, Stephens M, Donnelly P (2000) Inference of Population Structure Using Multilocus Genotype Data. Genetics 155: 945-959.
17. RuizöLinares A (1999) Microsatellites and the reconstruction of the history of human populations; Goldstein DB, Schlötterer C, eds. Oxford: Oxford University Press.
18. Nei M, Takezaki N (1996) The root of the phylogenetic tree of human populations. Mol Biol Evol 13: 170-177.
19. Goldstein DB, Linares AR, Cavalli-Sforza LL, Feldman MW (1995) An evaluation of genetic distances for use with microsatellite loci. Genetics 139: 463-471.
20. Bowcock AM, Ruiz-Linares A, Tomfohrde J, Minch E, Kidd JR, et al. (1994) High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368: 455-457.
21. Peter C, Bruford M, Perez T, Dalamitra S, Hewitt G, et al. (2007) Genetic diversity and subdivision of 57 European and Middle-Eastern sheep breeds. Anim Genet 38: 37-44.
22. Kim TH, Kim KS, Choi BH, Yoon DH, Jang GW, et al. (2005) Genetic structure of pig breeds from Korea and China using microsatellite loci analysis. J Anim Sci 83: 2255-2263.
23. MacHugh DE, Loftus RT, Cunningham P, Bradley DG (1998) Genetic structure of seven European cattle breeds assessed using 20 microsatellite markers. Anim Genet 29: 333-340.
24. Ellegren H (2000) Heterogeneous mutation processes in human microsatellite DNA sequences. Nat Genet 24: 400-402.
25. Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, et al. (2002) Genetic structure of human populations. Science 298: 2381-2385.
26. Sahoo S, Kashyap V (2005) Influence of language and ancestry on genetic structure of contiguous populations: A microsatellite based study on populations of Orissa. BMC Genet 6: 4.
27. Cavalli-Sforza LL (1998) The Chinese Human Genome Diversity Project. Proc Natl Acad Sci U S A 95: 11501-11503.
28. Chu JY, Xu JJ, Fu SB, Lin KQ, Zhu SL, et al. (2008) The establishment of the immortalize cell bank of different Chinese ethnic groups. Int J Genet 31: 241-247.
29. Rosenberg NA, Li LM, Ward R, Pritchard JK (2003) Informativeness of genetic markers for inference of ancestry. Am J Hum Genet 73: 1402-1422.
30. Rosenberg NA, Burke T, Elo K, Feldman MW, Freidlin PJ, et al. (2001) Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds. Genetics 159: 699-713.
31. Excoffier L, Laval G, Schneider S (2005) Arlequin version 3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1: 47-50.
32. Nei M, Kumar S (2000) Molecular evolution and phylogenetics. Oxford: Oxford University Press.
33. Guo SW, Thompson EA (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48: 361-372.
34. Nei M, Tajima F, Tateno Y (1983) Accuracy of estimated phylogenetic trees from molecular data. J Mol Evol 19: 153-170.
35. Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis: models and estimation procedures. Evolution 21: 550-570.
36. Takezaki N, Nei M (1996) Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics 144: 389-399.
37. Moazami-Goudarzi K, Laloe D (2002) Is a multivariate consensus representation of genetic relationships among populations always meaningful? Genetics 162: 473-484.
38. Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27: 209-220.
39. Ota T (1993) DISPAN: genetic distance and phylogenetic analysis. Pennsylvania State University.
40. Minch E, Ruiz-Linares A, Goldstein DB, Feldman MW, Cavalli-Sforza LL (1998) MICROSAT: a computer program for calculating various statistics on microsatellite allele data. Department of Genetics, Stanford University.
41. Felsenstein J (2004) PHYLIP (Phylogeny Inference Package) version 3.6. Department of Genome Sciences, University of Washington.
42. Cavalli-Sforza LL, Menozzi P, Piazza A (1994) The history and geography of human genes. Princeton N.J.: Princeton University Press.
43. Jackson JE (1991) A user's guide to principal components. New York: Wiley.
44. Zwick WR, Velicer WF (1986) Comparison of five rules for determining the number of components to retain. Psychol Bull 99: 432-442.
45. Jakobsson M, Rosenberg NA (2007) CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23: 1801-1806.
46. Sanchez-Mazas A, Poloni ES, Jacques G, Sagart L (2005) HLA genetic diversity and linguistic variation in East Asia. In: Sagart L, Blench R, Sanchez-Mazas A, eds. The Peopling of East Asia. London: Routledge/Curzon. pp 273-296.
47. Koskinen MT, Hirvonen H, Landry PA, Primmer CR (2004) The benefits of increasing the number of microsatellites utilized in genetic population studies: an empirical perspective. Hereditas 141: 61-67.
48. Shi H, Dong YL, Wen B, Xiao CJ, Underhill PA, et al. (2005) Y-chromosome evidence of southern origin of the East Asian-specific haplogroup O3-M122. Am J Hum Genet 77: 408-419.
49. Y Chromosome Consortium (2002) A nomenclature system for the tree of human Y-chromosomal binary haplogroups. Genome Res 12: 339-348.
50. Wen B, Li H, Lu D, Song X, Zhang F, et al. (2004) Genetic evidence supports demic diffusion of Han culture. Nature 431: 302-305.
51. Benedict PK (1972) Sino-Tibetan: a conspectus. Contributing editor JamesA Matisoff, ed. Cambridge: Cambridge University Press.
52. Benedict PK (1975) Austro-Thai language and culture, with a glossary of roots. New Haven: HRAF Press.
53. Li FK (1977) A handbook of comparative Tai. Honolulu: University Press of Hawaii.
54. Starosta S (2005) Proto-East Asian and the origin and dispersal of the languages of East and Southeast Asia and the Pacific. In: Sagart L, Blench R, Sanchez-Mazas A, eds. The Peopling of East Asia. London: Routledge/Curzon. pp 182-197.
55. Sagart L (2005) Tai-Kadai as a subgroup of Austronesian. In: Sagart L, Blench R, Sanchez-Mazas A, eds. The Peopling of East Asia. London: Routledge/Curzon. pp 177-181.