Biofabrication to build the biology-device interface

Biofabrication

Volumn 2, Issue 2, 2010, Pages

  Liu, Yi ^a   Kim, Eunkyoung ^a   Ghodssi, Reza ^b   Rubloff, Gary W ^b   Culver, James N ^a   Bentley, William E ^a,b   Payne, Gregory F ^a,b  

^a UNIVERSITY OF MARYLAND   (United States)

^b UNIVERSITY OF MARYLAND   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; BIOFABRICATION; BIOLOGICAL COMPONENTS; BIOMOLECULAR ENGINEERING; CONVERGENT APPROACH; DEVICE INTERFACES; DIRECTED ASSEMBLY; ELECTRONIC SYSTEMS; FILM-FORMING; IMPLANTABLE DEVICES; LENGTH SCALE; LOOK-FORWARD; MICRO-ELECTRONIC DEVICES; PHYSIOLOGICAL CONDITION; REGENERATIVE MEDICINE; STIMULI-RESPONSIVE MATERIALS; TOPDOWN;

AMINO ACIDS; FABRICATION; MICROELECTRONICS; ORGANIC ACIDS; PHYSIOLOGICAL MODELS;

BIOLOGY;

BIOMATERIAL;

BIOENGINEERING; BIOTECHNOLOGY; ELECTRONICS; HUMAN; MOLECULAR BIOLOGY; REVIEW;

BIOCOMPATIBLE MATERIALS; BIOENGINEERING; BIOTECHNOLOGY; ELECTRONICS, MEDICAL; HUMANS; MOLECULAR BIOLOGY;

EID: 79952111219     PISSN: 17585082     EISSN: 17585090     Source Type: Journal    
DOI: 10.1088/1758-5082/2/2/022002     Document Type: Article

References (241)

1. Xiao Y, Patolsky F, Katz E, Hainfeld J F and Willner I 2003 'Plugging into enzymes': nanowiring of redox enzymes by a gold nanoparticle Science 299 1877
2. Abouraddy A F et al 2007 Towards multimaterial multifunctional fibres that see, hear, sense and communicate Nat. Mater. 6 336
3. Hamedi M, Forchheimer R and Inganas O 2007 Towards woven logic from organic electronic fibres Nat. Mater. 6 357
4. Lovley D R 2008 The microbe electric: conversion of organic matter to electricity Curr. Opin. Biotechnol. 19 564
5. Lovley D R 2008 Extracellular electron transfer: wires, capacitors, iron lungs, and more Geobiology 6 225
6. Marsili E, Baron D B, Shikhare I D, Coursolle D, Gralnick J A and Bond D R 2008 Shewanella secretes flavins that mediate extracellular electron transfer Proc. Natl Acad. Sci. USA 105 3968
7. Zou Y, Pisciotta J, Billmyre R B and Baskakov I V 2009 Photosynthetic microbial fuel cells with positive light response Biotechnol. Bioeng. 104 939
8. Mano N, Mao F and Heller A 2002 A miniature biofuel cell operating in a physiological buffer J. Am. Chem. Soc. 124 12962
9. Katz E, Buckmann A F and Willner I 2001 Self-powered enzyme-based biosensors J. Am. Chem. Soc. 123 10752
10. Nam K T, Kim D W, Yoo P J, Chiang C Y, Meethong N, Hammond P T, Chiang Y M and Belcher A M 2006 Virus-enabled synthesis and assembly of nanowires for lithium ion battery electrodes Science 312 885
11. Saliterman S S 2005 Education, bioMEMS and the medical microdevice revolution Expert Rev. Med. Devices 2 515
12. Ball P 2001 Life's lessons in design Nature 409 413
13. Ball P 2002 Natural strategies for the molecular engineer Nanotechnology 13 R15
14. Ball P 2005 Synthetic biology for nanotechnology Nanotechnology 16 R1
15. Wu L Q and Payne G F 2004 Biofabrication: using biological materials and biocatalysts to construct nanostructured assemblies Trends Biotechnol. 22 593
16. Yi H M, Wu L Q, Bentley W E, Ghodssi R, Rubloff G W, Culver J N and Payne G F 2005 Biofabrication with chitosan Biomacromolecules 6 2881
17. Fritz M, Belcher A M, Radmacher M, Walters D A, Hansma P K, Stucky G D, Morse D E and Mann S 1994 Flat pearls from biofabrication of organized composites on inorganic substrates Nature 371 49
18. Zaremba C M, Belcher A M, Fritz M, Li Y L, Mann S, Hansma P K, Morse D E, Speck J S and Stucky G D 1996 Critical transitions in the biofabrication of abalone shells and flat pearls Chem. Mater. 8 679
19. Schroder H C, Wang X H, Tremel W, Ushijima H and Muller W E G 2008 Biofabrication of biosilica-glass by living organisms Nat. Prod. Rep. 25 455
20. Muller W E G et al 2009 Sponge spicules as blueprints for the biofabrication of inorganic-organic composites and biomaterials Appl. Microbiol. Biotechnol. 83 397
21. Mironov V, Trusk T, Kasyanov V, Little S, Swaja R and Markwald R 2009 Biofabrication: a 21st century manufacturing paradigm Biofabrication 1 022001
22. Kasyanov V A et al 2009 Rapid biofabrication of tubular tissue constructs by centrifugal casting in a decellularized natural scaffold with laser-machined micropores J. Mater. Sci. Mater. Med. 20 329
23. Mironov V, Kasyanov V and Markwald R R 2008 Nanotechnology in vascular tissue engineering: from nanoscaffolding towards rapid vessel biofabrication Trends Biotechnol. 26 338
24. Dickerson M B, Sandhage K H and Naik R R 2008 Protein-and peptide-directed syntheses of inorganic materials Chem. Rev. 108 4935
25. Hartgerink J D, Beniash E and Stupp S I 2002 Peptide-amphiphile nanofibers: a versatile scaffold for the preparation of self-assembling materials Proc. Natl Acad. Sci. USA 99 5133
26. Yemini M, Reches M, Rishpon J and Gazit E 2005 Novel electrochemical biosensing platform using self-assembled peptide nanotubes Nano Lett. 5 183
27. Soldatov D V, Moudrakovski I L and Ripmeester J A 2004 Dipeptides as microporous materials Angew. Chem., Int. Ed. 43 6308
28. Williams R J, Smith A M, Collins R, Hodson N, Das A K and Ulijn R V 2009 Enzyme-assisted self-assembly under thermodynamic control Nat. Nanotechnol. 4 19
29. Zhao X J and Zhang S G 2006 Molecular designer self-assembling peptides Chem. Soc. Rev. 35 1105
30. Zheng J P, Birktoft J J, Chen Y, Wang T, Sha R J, Constantinou P E, Ginell S L, Mao C D and Seeman N C 2009 From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal Nature 461 74
31. Macfarlane R J, Lee B, Hill H D, Senesi A J, Seifert S and Mirkin C A 2009 Assembly and organization processes in DNA-directed colloidal crystallization Proc. Natl Acad. Sci. USA 106 10493
32. Rodriguez-Cabello J C, Martin L, Alonso M, Arias F J and Testera A M 2009 'Recombinamers' as advanced materials for the post-oil age Polymer 50 5159
33. Marquette C A, Imbert-Laurenceau E, Mallet F, Chaix C, Mandrand B and Blum L J 2005 Electroaddressed immobilization of recombinant HIV-1 P24 capsid protein onto screen-printed arrays for serological testing Anal. Biochem. 340 14
34. Polsky R, Harper J C, Wheeler D R, Dirk S M, Arango D C and Brozik S M 2008 Electrically addressable diazonium-functionalized antibodies for multianalyte electrochemical sensor applications Biosens. Bioelectron. 23 757
35. Yeo W S, Yousaf M N and Mrksich M 2003 Dynamic interfaces between cells and surfaces: electroactive substrates that sequentially release and attach cells J. Am. Chem. Soc. 125 14994
36. Kim K, Jang M, Yang H S, Kim E, Kim Y T and Kwak J 2004 Electrochemically induced and controlled one-step covalent coupling reaction on self-assembled monolayers Langmuir 20 3821
37. Kaji H, Hashimoto M and Nishizawa M 2006 On-demand patterning of protein matrixes inside a microfluidic device Anal. Chem. 78 5469
38. Wu L Q, Gadre A P, Yi H M, Kastantin M J, Rubloff G W, Bentley W E, Payne G F and Ghodssi R 2002 Voltage-dependent assembly of the polysaccharide chitosan onto an electrode surface Langmuir 18 8620
39. Redepenning J, Venkataraman G, Chen J and Stafford N 2003 Electrochemical preparation of chitosan/hydroxyapatite composite coatings on titanium substrates J. Biomed. Mater. Res. A 66 411
40. Ladet S, David L and Domard A 2008 Multi-membrane hydrogels Nature 452 76
41. Fernandes R, Wu L Q, Chen T H, Yi H M, Rubloff G W, Ghodssi R, Bentley W E and Payne G F 2003 Electrochemically induced deposition of a polysaccharide hydrogel onto a patterned surface Langmuir 19 4058
42. Zangmeister R A, Park J J, Rubloff G W and Tarlov M J 2006 Electrochemical study of chitosan films deposited from solution at reducing potentials Electrochim. Acta 51 5324
43. Pang X and Zhitomirsky I 2005 Electrodeposition of composite hydroxyapatite-chitosan films Mater. Chem. Phys. 94 245
44. Wu L Q, Yi H M, Li S, Rubloff G W, Bentley W E, Ghodssi R and Payne G F 2003 Spatially selective deposition of a reactive polysaccharide layer onto a patterned template Langmuir 19 519
45. Wu L Q, Lee K, Wang X, English D S, Losert W and Payne G F 2005 Chitosan-mediated and spatially selective electrodeposition of nanoscale particles Langmuir 21 3641
46. Buckhout-White S L and Rubloff G W 2009 Spatial resolution in chitosan-based programmable biomolecular scaffolds Soft Matter 5 3677
47. Luo X L, Xu J J, Du Y and Chen H Y 2004 A glucose biosensor based on chitosan-glucose oxidase-gold nanoparticles biocomposite formed by one-step electrodeposition Anal. Biochem. 334 284
48. Xu J J, Luo X L, Du Y and Chen H Y 2004 Application of MnO2 nanoparticles as an eliminator of ascorbate interference to amperometric glucose biosensors Electrochem. Commun. 6 1169
49. Luo X L, Xu J J, Zhang Q, Yang G J and Chen H Y 2005 Electrochemically deposited chitosan hydrogel for horseradish peroxidase immobilization through gold nanoparticles self-assembly Biosens. Bioelectron. 21 190
50. Du Y, Luo X L, Xu J J and Chen H Y 2007 A simple method to fabricate a chitosan-gold nanoparticles film and its application in glucose biosensor Bioelectrochemistry 70 342
51. Zhao G, Xu J J and Chen H Y 2006 Fabrication, characterization of Fe3O4 multilayer film and its application in promoting direct electron transfer of hemoglobin Electrochem. Commun. 8 148
52. 2 Electrochem. Commun. 9 2611
53. Bai Y H, Xu J J and Chen H Y 2009 Selective sensing of cysteine on manganese dioxide nanowires and chitosan modified glassy carbon electrodes Biosens. Bioelectron. 24 2985
54. 2/choline J. Phys. Chem. C 112 18984
55. Luo X L, Xu J J, Wang J L and Chen H Y 2005 Electrochemically deposited nanocomposite of chitosan and carbon nanotubes for biosensor application Chem. Commun. 16 2169
56. 2 J. Phys. Chem. B 111 11276
57. Chen P C, Chen R L C, Cheng T J and Wittstock G. 2009 Localized deposition of chitosan as matrix for enzyme immobilization Electroanalysis 21 804
58. Tangkuaram T, Ponchio C, Kangkasomboon T, Katikawong P and Veerasai W 2007 Design and development of a highly stable hydrogen peroxide biosensor on screen printed carbon electrode based on horseradish peroxidase bound with gold nanoparticles in the matrix of chitosan Biosens. Bioelectron. 22 2071
59. Xi F N, Liu L J, Wu Q and Lin X F 2008 One-step construction of biosensor based on chitosan-ionic liquid-horseradish peroxidase biocomposite formed by electrodeposition Biosens. Bioelectron. 24 29
60. Du D, Ding J W, Cai J and Zhang A D 2007 Determination of carbaryl pesticide using amperometric acetylcholinesterase sensor formed by electrochemically deposited chitosan Colloids Surf. B 58 145
61. Du D, Ding J W, Cai J and Zhang A D 2007 Electrochemical thiocholine inhibition sensor based on biocatalytic growth of Au nanoparticles using chitosan as template Sensors Actuators B 127 317
62. Du D, Ding J W, Cai J and Zhang A D 2007 One-step electrochemically deposited interface of chitosan-gold nanoparticles for acetylcholinesterase biosensor design J. Electroanal. Chem. 605 53
63. Gong J M, Liu T, Song D D, Zhang X B and Zhang L Z 2009 One-step fabrication of three-dimensional porous calcium carbonate-chitosan composite film as the immobilization matrix of acetylcholinesterase and its biosensing on pesticide Electrochem. Commun. 11 1873
64. Eby D M, Luckarift H R and Johnson G R 2009 Hybrid antimicrobial enzyme and silver nanoparticle coatings for medical instruments ACS Appl. Mater. 1 1553 Interfaces
65. Li F, Wang Z, Chen W and Zhang S S 2009 A simple strategy for one-step construction of bienzyme biosensor by in situ formation of biocomposite film through electrodeposition Biosens. Bioelectron. 24 3030
66. Liang R P, Peng H Z and Qiu J D 2008 Fabrication, characterization, and application of potentiometric immunosensor based on biocompatible and controllable three-dimensional porous chitosan membranes J. Colloid Interface Sci. 320 125
67. Yi H M, Wu L Q, Ghodssi R, Rubloff G W, Payne G F and Bentley W E 2004 A robust technique for assembly of nucleic acid hybridization chips based on electrochemically templated chitosan Anal. Chem. 76 365
68. Liang R P, Fan L X, Wang R and Qiu J D 2009 One-step electrochemically deposited nanocomposite film of CS-Fc/MWNTs/GOD for glucose biosensor application Electroanalysis 21 1685
69. Qiu J D, Wang R, Liang R P and Xia X H 2009 Electrochemically deposited nanocomposite film of CS-Fc/Au NPs/GOx for glucose biosensor application Biosens. Bioelectron. 24 2920
70. Wang X Y, Gu H F, Yin F and Tu Y F 2009 A glucose biosensor based on Prussian blue/chitosan hybrid film Biosens. Bioelectron. 24 1527
71. Gong J M, Wang L Y, Zhao K and Song D D 2008 One-step fabrication of chitosan-hematite nanotubes composite film and its biosensing for hydrogen peroxide Electrochem. Commun. 10 123
72. Zeng X D, Li X F, Xing L, Liu X Y, Luo S L, Wei W Z, Kong B and Li Y H 2009 Electrodeposition of chitosan-ionic liquid-glucose oxidase biocomposite onto nano-gold electrode for amperometric glucose sensing Biosens. Bioelectron. 24 2898
73. Wu Z G, Feng W, Feng Y Y, Liu Q, Xu X H, Sekino T, Fujii A and Ozaki M 2007 Preparation and characterization of chitosan-grafted multiwalled carbon nanotubes and their electrochemical properties Carbon 45 1212
74. Hao C, Ding L, Zhang X and Ju H 2007 Biocompatible conductive architecture of carbon nanofiber-doped chitosan prepared with controllable electrodeposition for cytosensing Anal. Chem. 79 4442
75. Zhu C, Wu L Q, Wang X, Lee J H, English D S, Ghodssi R, Raghavan S R and Payne G F 2007 Reversible vesicle restraint in response to spatiotemporally controlled electrical signals: a bridge between electrical and chemical signaling modes Langmuir 23 286
76. Wang J, de Boer J and de Groot K 2004 Preparation and characterization of electrodeposited calcium phosphate/chitosan coating on Ti6Al4V plates J. Dent. Res. 83 296
77. Pang X and Zhitomirsky I 2007 Electrophoretic deposition of composite hydroxyapatite-chitosan coatings Mater. Charact. 58 339
78. Grandfield K and Zhitomirsky I 2008 Electrophoretic deposition of composite hydroxyapatite-silica-chitosan coatings Mater. Charact. 59 61
79. Zhitomirsky D, Roether J A, Boccaccini A R and Zhitomirsky I 2009 Electrophoretic deposition of bioactive glass/polymer composite coatings with and without HA nanoparticle inclusions for biomedical applications J. Mater. Process. Technol. 209 1853
80. 3-chitosan composite coatings J. Colloid Interface Sci. 330 323
81. Pang X and Zhitomirsky I 2008 Electrodeposition of hydroxyapatite-silver- chitosan nanocomposite coatings Surf. Coat. Technol. 202 3815
82. Meyer W L, Liu Y, Shi X W, Yang X H, Bentley W E and Payne G F 2009 Chitosan-coated wires: conferring electrical properties to chitosan fibers Biomacromolecules 10 858
83. Bardetsky D and Zhitomirsky I 2005 Electrochemical preparation of composite films containing cationic polyelectrolytes and cobalt hydroxide Surf. Eng. 21 125
84. Nagarajan N and Zhitomirsky I 2006 Cathodic electrosynthesis of iron oxide films for electrochemical supercapacitors J. Appl. Electrochem. 36 1399
85. Zhitomirsky I 2006 Electrophoretic deposition of organic-inorganic nanocomposites J. Mater. Sci. 41 8186
86. Zhitomirsky I and Hashambhoy A 2007 Chitosan-mediated electrosynthesis of organic-inorganic nanocomposites J. Mater. Proc. Technol. 191 68
87. Tondo E, Boniardi M, Cannoletta D, D'Elia M, D'Urzo L and Bozzini B 2009 Electrodeposition of NiO/YSZ from hydroalcoholic solutions containing chitosan Surf. Coat. Technol. 203 3427
88. Sun F, Pang X and Zhitomirsky I 2009 Electrophoretic deposition of composite hydroxyapatite-chitosan-heparin coatings J. Mater. Process. Technol. 209 1597
89. Sun F, Sask K N, Brash J L and Zhitomirsky I 2008 Surface modifications of Nitinol for biomedical applications Colloids Surf. B 67 132
90. Grandfield K, Sun F, FitzPatrick M, Cheong M and Zhitomirsky I 2009 Electrophoretic deposition of polymer-carbon nanotube-hydroxyapatite composites Surf. Coat. Technol. 203 1481
91. Cheong M and Zhitomirsky I 2008 Electrodeposition of alginic acid and composite films Colloids Surf. A 328 73
92. Cheong M and Zhitomirsky I 2009 Electrophoretic deposition of manganese oxide films Surf. Eng. 25 346
93. Sun F and Zhitomirsky I 2009 Electrodeposition of hyaluronic acid and composite films Surf. Eng. 25 621
94. Sakaguchi T, Morioka Y, Yamasaki M, Iwanaga J, Beppu K, Maeda H, Morita Y and Tamiya E 2007 Rapid and onsite BOD sensing system using luminous bacterial cells-immobilized chip Biosens. Bioelectron. 22 1345
95. Tan W H and Takeuchi S 2007 Monodisperse alginate hydrogel microbeads for cell encapsulation Adv. Mater. 19 2696
96. Workman V L, Dunnett S B, Kille P and Palmer D D 2008 On-chip alginate microencapsulation of functional cells Macromol. Rapid Commun. 29 165
97. Sugiura S, Oda T, Izumida Y, Aoyagi Y, Satake M, Ochiai A, Ohkohchi N and Nakajima M 2005 Size control of calcium alginate beads containing living cells using micro-nozzle array Biomaterials 26 3327
98. Braschler T, Johann R, Heule M, Metref L and Renaud P 2005 Gentle cell trapping and release on a microfluidic chip by in situ alginate hydrogel formation Lab Chip 5 553
99. Sugiura S, Oda T, Aoyagi Y, Satake M, Ohkohchi N and Nakajima M 2008 Tubular gel fabrication and cell encapsulation in laminar flow stream formed by microfabricated nozzle array Lab Chip 8 1255
100. Grossin L et al 2009 Step-by-step build-up of biologically active cell-containing stratified films aimed at tissue engineering Adv. Mater. 21 650
101. Sung J H and Shuler M L 2009 A micro cell culture analog (micro CCA) with 3D hydrogel culture of multiple cell lines to assess metabolism-dependent cytotoxicity of anti-cancer drugs Lab Chip 9 1385
102. Sikorski P, Mo F, Skjak-Brk G and Stokke B T 2007 Evidence for egg-box-compatible interactions in calcium-alginate gels from fiber x-ray diffraction Biomacromolecules 8 2098
103. Shi X W, Tsao C-Y, Yang X, Liu Y, Dykstra P, Rubloff G W, Ghodssi R, Bentley W E and Payne G F 2009 Electroaddressing of cell populations by co-deposition with calcium alginate hydrogels Adv. Funct. Mater. 19 2074
104. Cheng J C and Pisano A P 2008 Photolithographic process for integration of the biopolymer chitosan into micro/nano structures J. Microelectromech. Syst. 17 402
105. Park I, Cheng J, Pisano A P, Lee E S and Jeong J H 2007 Low temperature, low pressure nanoimprinting of chitosan as a biomaterial for bionanotechnology applications Appl. Phys. Lett. 90 3
106. Shi X W, Yang X H, Gaskell K J, Liu Y, Kobatake E, Bentley W E and Payne G F 2009 Reagentless protein assembly triggered by localized electrical signals Adv. Mater. 21 984
107. Kastantin M J, Li S, Gadre A P, Wu L Q, Bentley W E, Payne G F, Rubloff G W and Ghodssi R 2003 Integrated fabrication of polymeric devices for biological applications Sens. Mater. 15 295
108. Park J J, Luo X, Yi H, Valentine T M, Payne G F, Bentley W E, Ghodssi R and Rubloff G W 2006 Chitosan-mediated in situ biomolecule assembly in completely packaged microfluidic devices Lab Chip 6 1315
109. Lewandowski A T, Yi H M, Luo X L, Payne G F, Ghodssi R, Rubloff G W and Bentley W E 2008 Protein assembly onto patterned microfabricated devices through enzymatic activation of fusion pro-tag Biotechnol. Bioeng. 99 499
110. Luo X L, Lewandowski A T, Yi H M, Payne G F, Ghodssi R, Bentley W E and Rubloff G W 2008 Programmable assembly of a metabolic pathway enzyme in a pre-packaged reusable bioMEMS device Lab Chip 8 420
111. Wu L Q, Ghodssi R, Elabd Y A and Payne G F 2005 Biomimetic pattern transfer Adv. Funct. Mater. 15 189
112. Wu L Q, McDermott M K, Zhu C, Ghodssi R and Payne G E 2006 Mimicking biological phenol reaction cascades to confer mechanical function Adv. Funct. Mater. 16 1967
113. Liu Y, Gaskell K J, Cheng Z, Yu L L and Payne G F 2008 Chitosan-coated electrodes for bimodal sensing: selective post-electrode film reaction for spectroelectrochemical analysis Langmuir 24 7223
114. Dykstra P, Hao J J, Koev S T, Payne G F, Yu L L and Ghodssi R 2009 An optical MEMS sensor utilizing a chitosan film for catechol detection Sensors Actuators B 138 64
115. Koev S T, Powers M A, Yi H, Wu L Q, Bentley W E, Rubloff G W, Payne G F and Ghodssi R 2007 Mechano-transduction of DNA hybridization and dopamine oxidation through electrodeposited chitosan network Lab Chip 7 103
116. Luo X, Berlin D L, Betz J, Payne G F, Bentley W E and Rubloff G W In situ generation of pH gradients in microfluidic devices for biofabrication of freestanding, semi-permeable chitosan membranes Lab Chip 10 59
117. Baker H R, Merschrod S E F and Poduska K M 2008 Electrochemically controlled growth and positioning of suspended collagen membranes Langmuir 24 2970
118. Kumar M R, Merschrod E F and Poduska K M 2009 Correlating mechanical properties with aggregation processes in electrochemically fabricated collagen membranes Biomacromolecules 10 1970
119. Johann R M and Renaud P 2007 Microfluidic patterning of alginate hydrogels Biointerphases 2 73
120. Huang K S, Lai T H and Lin Y C 2006 Manipulating the generation of Ca-alginate microspheres using microfluidic channels as a carrier of gold nanoparticles Lab Chip 6 954
121. Zhang H, Tumarkin E, Peerani R, Nie Z, Sullan R M, Walker G C and Kumacheva E 2006 Microfluidic production of biopolymer microcapsules with controlled morphology J. Am. Chem. Soc. 128 12205
122. Capretto L, Mazzitelli S, Balestra C, Tosi A and Nastruzzi C 2008 Effect of the gelation process on the production of alginate microbeads by microfluidic chip technology Lab Chip 8 617
123. Wong L S, Khan F and Micklefield J 2009 Selective covalent protein immobilization: strategies and applications Chem. Rev. 109 4025
124. Sunbul M and Yin J 2009 Site specific protein labeling by enzymatic posttranslational modification Org. Biomol. Chem. 7 3361
125. Hodneland C D, Lee Y S, Min D H and Mrksich M 2002 Selective immobilization of proteins to self-assembled monolayers presenting active site-directed capture ligands Proc. Natl Acad. Sci. USA 99 5048
126. Kindermann M, George N, Johnsson N and Johnsson K 2003 Covalent and selective immobilization of fusion proteins J. Am. Chem. Soc. 125 7810
127. Williams T, Marumo K, Waite J H and Henkens R W 1989 Mussel glue protein has an open conformation Arch. Biochem. Biophys. 269 415
128. Deacon M P, Davis S S, Waite J H and Harding S E 1998 Structure and mucoadhesion of mussel glue protein in dilute solution Biochemistry 37 14108
129. Aberg C M, Chen T H, Olumide A, Raghavan S R and Payne G F 2004 Enzymatic grafting of peptides from casein hydrolysate to chitosan, potential for value-added byproducts from food-processing wastes J. Agric. Food Chem. 52 788
130. Anghileri A, Lantto R, Kruus K, Arosio C and Freddi G 2007 Tyrosinase-catalyzed grafting of sericin peptides onto chitosan and production of protein-polysaccharide bioconjugates J. Biotechnol. 127 508
131. Demolliens A, Boucher C, Durocher Y, Jolicoeur M, Buschmann M D and De Crescenzo G 2008 Tyrosinase-catalyzed synthesis of a universal coil-chitosan bioconjugate for protein immobilization Bioconjug. Chem. 19 1849
132. Kang G D, Lee K H, Ki C S, Nahm J H and Park Y H 2004 Silk fibroin/chitosan conjugate crosslinked by tyrosinase Macromol. Res. 12 534
133. Sampaio S, Taddei P, Monti P, Buchert J and Freddi G 2005 Enzymatic grafting of chitosan onto Bombyx mori silk fibroin: kinetic and IR vibrational studies J. Biotechnol. 116 21
134. Freddi G, Anghileri A, Sampaio S, Buchert J, Monti P and Taddei P 2006 Tyrosinase-catalyzed modification of Bombyx mori silk fibroin: grafting of chitosan under heterogeneous reaction conditions J. Biotechnol. 125 281
135. Chen T, Embree H D, Wu L Q and Payne G F 2002 In vitro protein-polysaccharide conjugation: tyrosinase-catalyzed conjugation of gelatin and chitosan Biopolymers 64 292
136. Chen T, Embree H D, Brown E M, Taylor M M and Payne G F 2003 Enzyme-catalyzed gel formation of gelatin and chitosan: potential for in situ applications Biomaterials 24 2831
137. Muzzarelli R A A, Ilari P, Xia W S, Pinotti M and Tomasetti M 1994 Tyrosinase-meadiated quinone tanning of chitnous materials Carbohydr. Polym. 24 295
138. Shao L H, Kumar G, Lenhart J L, Smith P J and Payne G F 1999 Enzymatic modification of the synthetic polymer polyhydroxystyrene Enzyme Microb. Technol. 25 660
139. Lee B P, Dalsin J L and Messersmith P B 2002 Synthesis and gelation of DOPA-Modified poly(ethylene glycol) hydrogels Biomacromolecules 3 1038
140. Kuboe Y, Tonegawa H, Ohkawa K and Yamamoto H 2004 Quinone cross-linked polysaccharide hybrid fiber Biomacromolecules 5 348
141. Basnar B, Xu J P, Li D and Willner I 2007 Encoded and enzyme-activated nanolithography of gold and magnetic nanoparticles on silicon Langmuir 23 2293
142. Chen T H, Small D A, Wu L Q, Rubloff G W, Ghodssi R, Vazquez-Duhalt R, Bentley W E and Payne G F 2003 Nature-inspired creation of protein- polysaccharide conjugate and its subsequent assembly onto a patterned surface Langmuir 19 9382
143. Lewandowski A T, Small D A, Chen T H, Payne G F and Bentley W E 2006 Tyrosine-based 'activatable pro-tag': enzyme-catalyzed protein capture and release Biotechnol. Bioeng. 93 1207
144. Wu H C et al 2009 Biofabrication of antibodies and Antigens via IgG-binding domain engineered with activatable pentatyrosine pro-tag Biotechnol. Bioeng. 103 231
145. Fernandes R, Tsao C Y, Hashimoto Y, Wang L, Wood T K, Payne G F and Bentley W E 2007 Magnetic nanofactories: localized synthesis and delivery of quorum-sensing signaling molecule autoinducer-2 to bacterial cell surfaces Metab. Eng. 9 228
146. Lewandowski A T, Bentley W E, Yi H M, Rubloff G W, Payne G F and Ghodssi R 2008 Towards area-based in vitro metabolic engineering: assembly of Pfs enzyme onto patterned microfabricated chips Biotechnol. Prog. 24 1042
147. Muzzarelli R A A, Littarrua G, Muzzarelli C and Tosi G 2003 Selective reactivity of biochemically relevant quinones towards chitosans Carbohydr. Polym. 53 109
148. Muzzarelli C and Muzzarelli R A A 2002 Reactivity of quinones towards chitosan Trends Glycosci. Glycotechnol. 14 223
149. Yuan Y, He H Y and Lee J 2009 Protein a-based antibody immobilization onto polymeric microdevices for enhanced sensitivity of enzyme-linked immunosorbent assay Biotechnol. Bioeng. 102 891
150. Ahmed S R, Lutes A T and Barbari T A 2006 Specific capture of target proteins by oriented antibodies bound to tyrosinase-immobilized protein A on a polyallylamine affinity membrane surface J. Membr. Sci. 282 311
151. Sakai S, Hirose K, Taguchi K, Ogushi Y and Kawakami K 2009 An injectable, in situ enzymatically gellable, gelatin derivative for drug delivery and tissue engineering Biomaterials 30 3371
152. Sakai S, Ogushi Y and Kawakami K 2009 Enzymatically crosslinked carboxymethylcellulose-tyramine conjugate hydrogel: cellular adhesiveness and feasibility for cell sheet technology Acta Biomaterialia 5 554
153. Lee F, Chung J E and Kurisawa M 2008 An injectable enzymatically crosslinked hyaluronic acid-tyramine hydrogel system with independent tuning of mechanical strength and gelation rate Soft Matter 4 880
154. Lee F, Chung J E and Kurisawa M 2009 An injectable hyaluronic acid-tyramine hydrogel system for protein delivery J. Control. Release 134 186
155. Gross R A, Kumar A and Kalra B 2001 Polymer synthesis by in vitro enzyme catalysis Chem. Rev. 101 2097
156. Kobayashi S and Makino A 2009 Enzymatic polymer synthesis: an opportunity for green polymer chemistry Chem. Rev. 109 5288
157. Shimba N, Yokoyama Y and Suzuki E 2002 NMR-based screening method for transglutaminases: rapid analysis of their substrate specificities and reaction rates J. Agric. Food Chem. 50 1330
158. Yokoyama K, Nio N and Kikuchi Y 2004 Properties and applications of microbial transglutaminase Appl. Microbiol. Biotechnol. 64 447
159. Zhu Y and Tramper J 2008 Novel applications for microbial transglutaminase beyond food processing Trends Biotechnol. 26 559
160. Ohtsuka T, Sawa A, Kawabata R, Nio N and Motoki M 2000 Substrate specificities of microbial transglutaminase for primary amines J. Agric. Food Chem. 48 6230
161. Fuchsbauer H L, Gerber U, Engelmann J, Seeger T, Sinks C and Hecht T 1996 Influence of gelatin matrices cross-linked with transglutaminase on the properties of an enclosed bioactive material using beta-galactosidase as model system Biomaterials 17 1481
162. Babin H and Dickinson E 2001 Influence of transglutaminase treatment on the thermoreversible gelation of gelatin Food Hydrocolloids 15 271
163. Crescenzi V, Francescangeli A and Taglienti A 2002 New gelatin-based hydrogels via enzymatic networking Biomacromolecules 3 1384
164. Lim L T, Mine Y and Tung M A 1999 Barrier and tensile properties of transglutaminase cross-linked gelatin films as affected by relative humidity, temperature, and glycerol content J. Food Sci. 64 616
165. Chen R N, Ho H O and Sheu M T 2005 Characterization of collagen matrices crosslinked using microbial transglutaminase Biomaterials 26 4229
166. O Halloran D M, Russell J C, Griffin M and Pandit A S 2006 Characterization of a microbial transglutaminase cross-linked type II collagen scaffold Tissue Eng. 12 1467
167. Damodaran G, Collighan R, Griffin M and Pandit A 2009 Tethering a laminin peptide to a crosslinked collagen scaffold for biofunctionality J. Biomed. Mater. Res. A 89 1001
168. Chau D Y S, Collighan R J, Verderio E A M, Addy V L and Griffin M 2005 The cellular response to transglutaminase-cross-linked collagen Biomaterials 26 6518
169. Orban J M, Wilson L B, Kofroth J A, El-Kurdi M S, Maul T M and Vorp D A 2004 Crosslinking of collagen gels by transglutaminase J. Biomed. Mater. Res. A 68 756
170. Seitz A, Schneider F, Pasternack R, Fuchsbauer H L and Hampp N 2001 Enzymatic cross-linking of purple membranes catalyzed by bacterial transglutaminase Biomacromolecules 2 233
171. Matsumura Y, Chanyongvorakul Y, Kumazawa Y, Ohtsuka T and Mori T 1996 Enhanced susceptibility to transglutaminase reaction of alpha-lactalbumin in the molten globule state Biochim. Biophys. Acta 1292 69
172. Nieuwenhuizen W F, Dekker H L, Groneveld T, de Koster C G and de Jong G A H 2004 Transglutaminase-mediated modification of glutamine and lysine residues in native bovine beta-lactoglobulin Biotechnol. Bioeng. 85 248
173. Kamiya N, Tanaka T, Suzuki T, Takazawa T, Takeda S, Watanabe K and Nagamune T 2003 S-peptide as a potent peptidyl linker for protein cross-linking by microbial transglutaminase from Streptomyces mobaraensis Bioconjugate Chem. 14 351
174. Tanaka T, Kamiya N and Nagamune T 2005 N-terminal glycine-specific protein conjugation catalyzed by microbial transglutaminase FEBS Lett. 579 2092
175. Tanaka T, Kamiya N and Nagamune T 2004 Peptidyl linkers for protein heterodimerization catalyzed by microbial transglutaminase Bioconjugate Chem. 15 491
176. Tominaga J, Kamiya N, Doi S, Ichinose H, Maruyama T and Goto M 2005 Design of a specific peptide tag that affords covalent and site-specific enzyme immobilization catalyzed by microbial transglutaminase Biomacromolecules 6 2299
177. Kamiya N, Doi S, Tominaga J, Ichinose H and Goto M 2005 Transglutaminase-mediated protein immobilization to casein nanolayers created on a plastic surface Biomacromolecules 6 35
178. Motoki M and Seguro K 1998 Transglutaminase and its use for food processing Trends Food Sci. Technol. 9 204
179. Chen T, Small D A, McDermott M K, Bentley W E and Payne G F 2003 Enzymatic methods for in situ cell entrapment and cell release Biomacromolecules 4 1558
180. McDermott M K, Chen T, Williams C M, Markley K M and Payne G F 2004 Mechanical properties of biomimetic tissue adhesive based on the microbial transglutaminase-catalyzed crosslinking of gelatin Biomacromolecules 5 1270
181. Chen T, Janjua R, McDermott M K, Bernstein S L, Steidl S M and Payne G F 2006 Gelatin-based biomimetic tissue adhesive. Potential for retinal reattachment J. Biomed. Mater. Res. B 77 416
182. Liu Y, Kopelman D, Wu L Q, Hijji K, Attar I, Preiss-Bloom O and Payne G F 2009 Biomimetic sealant based on gelatin and microbial transglutaminase: an initial in vivo investigation J. Biomed. Mater. Res. B 91 5
183. Yung C W, Wu L Q, Tullman J A, Payne G F, Bentley W E and Barbari T A 2007 Transglutaminase crosslinked gelatin as a tissue engineering scaffold J. Biomed. Mater. Res. A 83 1039
184. Barbetta A, Massimi M, Devirgiliis L C and Dentini M 2006 Enzymatic cross-linking versus radical polymerization in the preparation of gelatin polyHIPEs and their performance as scaffolds in the culture of hepatocytes Biomacromolecules 7 3059
185. Broderick E P, O'Halloran D M, Rochev Y A, Griffin M, Collighan R J and Pandit A S 2005 Enzymatic stabilization of gelatin-based scaffolds J. Biomed. Mater. Res. B 72 37
186. Picard J, Giraudier S and Larreta-Garde V 2009 Controlled remodeling of a protein-polysaccharide mixed gel: examples of gelatin-hyaluronic acid mixtures Soft Matter 5 4198
187. Villalonga R, Fernandez M, Fragoso A, Cao R, Mariniello L and Porta R 2003 Thermal stabilization of trypsin by enzymic modification with beta-cyclodextrin derivatives Biotechnol. Appl. Biochem. 38 53
188. Josten A, Meusel M and Spener F 1998 Microbial transglutaminase-mediated synthesis of hapten-protein conjugates for immunoassays Anal. Biochem. 258 202
189. Tominaga J, Kemori Y, Tanaka Y, Maruyama T, Kamiya N and Goto M 2007 An enzymatic method for site-specific labeling of recombinant proteins with oligonucleotides Chem. Commun. 4 401
190. Sato H, Hayashi E, Yamada N, Yatagai M and Takahara Y 2001 Further studies on the site-specific protein modification by microbial transglutaminase Bioconjugate Chem. 12 701
191. Villalonga R, Fernandez M, Fragoso A, Cao R, Di Pierro P, Mariniello L and Porta R 2003 Transglutaminase-catalyzed synthesis of trypsin-cyclodextrin conjugates: kinetics and stability properties Biotechnol. Bioeng. 81 732
192. Valdivia A, Villalonga R, Di Pierro P, Perez Y, Mariniello L, Gomez L and Porta R 2006 Transglutaminase-catalyzed site-specific glycosidation of catalase with aminated dextran J. Biotechnol. 122 326
193. Sato M, Furuike T, Sadamoto R, Fujitani N, Nakahara T, Niikura K, Monde K, Kondo H and Nishimura S I 2004 Glycoinsulins: dendritic sialyloligosaccharide-displaying insulins showing a prolonged blood-sugar-lowering activity J. Am. Chem. Soc. 126 14013
194. Sato M, Sadamoto R, Niikura K, Monde K, Kondo H and Nishimura S I 2004 Site-specific introduction of sialic acid into insulin Angew. Chem., Int. Ed. 43 1516
195. Kruger R G, Otvos B, Frankel B A, Bentley M, Dostal P and McCafferty D G 2004 Analysis of the substrate specificity of the Staphylococcus aureus sortase transpeptidase SrtA Biochemistry 43 1541
196. Guttilla I K, Gaspar A H, Swierczynski A, Swaminathan A, Dwivedi P, Das A and Ton-That H 2009 Acyl enzyme intermediates in sortase-catalyzed pilus morphogenesis in gram-positive bacteria J. Bacteriol. 191 5603
197. Mao H Y, Hart S A, Schink A and Pollok B A 2004 Sortase-mediated protein ligation: a new method for protein engineering J. Am. Chem. Soc. 126 2670
198. Popp M W, Antos J M, Grotenbreg G M, Spooner E and Ploegh H L 2007 Sortagging: a versatile method for protein labeling Nat. Chem. Biol. 3 707
199. Tanaka T, Yamamoto T, Tsukiji S and Nagamune T 2008 Site-specific protein modification on living cells catalyzed by sortase ChemBioChem. 9 802
200. Parthasarathy R, Subramanian S and Boder E T 2007 Sortase A as a novel molecular 'stapler' for sequence-specific protein conjugation Bioconjugate Chem. 18 469
201. Antos J M, Popp M W L, Ernst R, Chew G L, Spooner E and Ploegh H L 2009 A straight path to circular proteins J. Biol. Chem. 284 16028
202. Pritz S, Wolf Y, Kraetke O, Klose J, Bienert M and Beyermann M 2007 Synthesis of biologically active peptide nucleic acid-peptide conjugates by sortase-mediated ligation J. Org. Chem. 72 3909
203. Samantaray S, Marathe U, Dasgupta S, Nandicoori V K and Roy R P 2008 Peptide-sugar ligation catalyzed by transpeptidase sortase: a facile approach to neoglycoconjugate synthesis J. Am. Chem. Soc. 130 2132
204. Antos J M, Miller G M, Grotenbreg G M and Ploegh H L 2008 Lipid modification of proteins through sortase-catalyzed transpeptidation J. Am. Chem. Soc. 130 16338
205. Guo X Q, Wang Q L, Swarts B M and Guo Z W 2009 Sortase-catalyzed peptide-glycosylphosphatidylinositol analogue ligation J. Am. Chem. Soc. 131 9878
206. Chan L, Cross H F, She J K, Cavalli G, Martins H F and Neylon C 2007 Covalent attachment of proteins to solid supports and surfaces via sortase-mediated ligation PLoS One 2 e1164
207. Yi H M, Wu L Q, Ghodssi R, Rubloff G W, Payne G F and Bentley W E 2005 Signal-directed sequential assembly of biomolecules on patterned surfaces Langmuir 21 2104
208. Yang X H, Shi X W, Liu Y, Bentley W E and Payne G F 2009 Orthogonal enzymatic reactions for the assembly of proteins at electrode addresses Langmuir 25 338
209. Paguirigan A and Beebe D J 2006 Gelatin based microfluidic devices for cell culture Lab Chip 6 407
210. Paguirigan A L and Beebe D J 2007 Protocol for the fabrication of enzymatically crosslinked gelatin microchannels for microfluidic cell culture Nat. Protoc. 2 1782
211. Manocchi A K, Domachuk P, Omenetto F G and Yi H M 2009 Facile fabrication of gelatin-based biopolymeric optical waveguides Biotechnol. Bioeng. 103 725
212. Boncheva M, Bruzewicz D A and Whitesides G M 2003 Millimeter-scale self-assembly and its applications Pure Appl. Chem. 75 621
213. Jones R A L 2009 Challenges in soft nanotechnology Faraday Discuss. 143 9
214. Vreeland W N and Locascio L E 2003 Using bioinspired thermally triggered liposomes for high-efficiency mixing and reagent delivery in microfluidic devices Anal. Chem. 75 6906
215. Locascio L E, Hong J S and Gaitan M 2002 Liposomes as signal amplification reagents for bioassays in microfluidic channels Electrophoresis 23 799
216. Lee J M, Park H K, Jung Y, Kim J K, Jung S O and Chung B H 2007 Direct immobilization of protein g variants with various numbers of cysteine residues on a gold surface Anal. Chem. 79 2680
217. Ichihara T, Akada J K, Kamei S, Ohshiro S, Sato D, Fujimoto M, Kuramitsu Y and Nakamura K 2006 A novel approach of protein immobilization for protein chips using an oligo-cysteine tag J. Proteome Res. 5 2144
218. Medintz I L, Sapsford K E, Clapp A R, Pons T, Higashiya S, Welch J T and Mattoussi H 2006 Designer variable repeat length polypeptides as scaffolds for surface immobilization of quantum dots J. Phys. Chem. B 110 10683
219. Johnson C P, Jensen I E, Prakasam A, Vijayendran R and Leckband D 2003 Engineered protein A for the orientational control of immobilized proteins Bioconjugate Chem. 14 974
220. Zhu H et al 2001 Global analysis of protein activities using proteome chips Science 293 2101
221. Park T J et al 2006 Protein nanopatterns and biosensors using gold binding polypeptide as a fusion partner Anal. Chem. 78 7197
222. Huang Y, Chiang C Y, Lee S K, Gao Y, Hu E L, De Yoreo J and Belcher A M 2005 Programmable assembly of nanoarchitectures using genetically engineered viruses Nano Lett. 5 1429
223. Baneyx F and Schwartz D T 2007 Selection and analysis of solid-binding peptides Curr. Opin. Biotechnol. 18 312
224. Whaley S R, English D S, Hu E L, Barbara P F and Belcher A M 2000 Selection of peptides with semiconductor binding specificity for directed nanocrystal assembly Nature 405 665
225. Martin L, Alonso M, Moller M, Rodriguez-Cabello J C and Mela P 2009 3D microstructuring of smart bioactive hydrogels based on recombinant elastin-like polymers Soft Matter 5 1591
226. Rui R C, Catarina A C, Ana M T, Francisco J A, José C R-C, Natlia M A and Joo F M 2009 Stimuli-responsive thin coatings using elastin-like polymers for biomedical applications Adv. Funct. Mater. 19 3210
227. Urry D W 1997 Physical chemistry of biological free energy transduction as demonstrated by elastic protein-based polymers J. Phys. Chem. B 101 11007
228. Nath N and Chilkoti A 2002 Creating 'Smart' surfaces using stimuli responsive polymers Adv. Mater. 14 1243
229. Hyun J, Lee W K, Nath N, Chilkoti A and Zauscher S 2004 Capture and release of proteins on the nanoscale by stimuli-responsive elastin-like polypeptide 'switches' J. Am. Chem. Soc. 126 7330
230. Tanaka G, Funabashi H, Mie M and Kobatake E 2006 Fabrication of an antibody microwell array with self-adhering antibody binding protein Anal. Biochem. 350 298
231. Gao D, McBean N, Schultz J S, Yan Y, Mulchandani A and Chen W 2006 Fabrication of antibody arrays using thermally responsive elastin fusion proteins J. Am. Chem. Soc. 128 676
232. Braun E and Keren K 2004 From DNA to transistors Adv. Phys. 53 441
233. Keren K, Berman R S and Braun E 2004 Patterned DNA metallization by sequence-specific localization of a reducing agent Nano Lett. 4 323
234. Braun E, Eichen Y, Sivan U and Ben-Yoseph G 1998 DNA-templated assembly and electrode attachment of a conducting silver wire Nature 391 775
235. Keren K, Krueger M, Gilad R, Ben-Yoseph G, Sivan U and Braun E 2002 Sequence-specific molecular lithography on single DNA molecules Science 297 72
236. Keren K, Berman R S, Buchstab E, Sivan U and Braun E 2003 DNA-templated carbon nanotube field-effect transistor Science 302 1380
237. Lee S Y, Choi J W, Royston E, Janes D B, Culver J N and Harris M T 2006 Deposition of platinum clusters on surface-modified tobacco mosaic virus J. Nanosci. Nanotechnol. 6 974
238. Yi H M et al 2005 Patterned assembly of genetically modified viral nanotemplates via nucleic acid hybridization Nano Lett. 5 1931
239. Royston E, Ghosh A, Kofinas P, Harris M T and Culver J N 2008 Self-assembly of virus-structured high surface area nanomaterials and their application as battery electrodes Langmuir 24 906
240. Gerasopoulos K, McCarthy M, Royston E, Culver J N and Ghodssi R 2008 Nanostructured nickel electrodes using the tobacco mosaic virus for microbattery applications J. Micromech. Microeng. 18 8
241. Gerasopoulos K, McCarthy M, Banerjee P, Fan X, Culver J N and Ghodssi R 2010 Biofabrication methods for the patterned assembly and synthesis of viral nanotemplates Nanotechnology 21 055304