Developments of functional markers for Fom-2-mediated fusarium wilt resistance based on single nucleotide polymorphism in melon (Cucumis melo L.)

Molecular Breeding

Volumn 27, Issue 3, 2011, Pages 385-393

  Wang, Shiwei ^a,b   Yang, Jinghua ^a,b   Zhang, Mingfang ^a,b  

^a ZHEJIANG UNIVERSITY   (China)

^b BEIJING HOSPITAL   (China)

Author keywords

Cucumis melo L.; Fom 2; Functional markers; Fusarium wilt; Single nucleotide polymorphism

Indexed keywords

FUNGI; NUCLEOTIDES; POLYMERASE CHAIN REACTION;

CLEAVED AMPLIFIED POLYMORPHIC SEQUENCES; CUCUMIS MELO; CUCUMIS MELO L; FOM-2; FUNCTIONAL MARKER; FUSARIUM WILT; LEUCINE-RICH REPEATS; PCR METHOD; SINGLE NUCLEOTIDE POLYMORPHISM SITES; SINGLE NUCLEOTIDE POLYMORPHISMS;

AMINO ACIDS;

CUCUMIS; CUCUMIS MELO; FUSARIUM;

EID: 79952102572     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-010-9439-8     Document Type: Article

References (40)

1. Andersen JR, Lubberstedt T (2003) Functional markers in plants. Trends Plant Sci 8: 554-560.
2. Arnholdt-Schmitt B, Costa JH, de Melo DF (2006) AOX-a functional marker for efficient cell reprogramming under stress? Trends Plant Sci 11: 281-287.
3. Bagge M, Lubberstedt T (2008) Functional markers in wheat: technical and economic aspects. Mol Breed 22: 319-328.
4. Bagge M, Xia XC, Lubberstedt T (2007) Functional markers in wheat-commentary. Curr Opin Plant Biol 10: 211-216.
5. Bang H, Kim S, Leskovar D, King S (2007) Development of a codominant CAPS marker for allelic selection between canary yellow and red watermelon based on SNP in lycopene beta-cyclase (LCYB) gene. Mol Breed 20: 63-72.
6. Brunner S, Keller B, Feuillet C (2000) Molecular mapping of the Rph7. g leaf rust resistance gene in barley (Hordeum vulgare L.). Theor Appl Genet 101: 783-788.
7. Chiapparino E, Lee D, Donini P (2004) Genotyping single nucleotide polymorphisms in barley by tetra-primer ARMS-PCR. Genome 47: 414-420.
8. Drenkard E, Richter BG, Rozen S, Stutius LM, Angell NA, Mindrinos M, Cho RJ, Oefner PJ, Davis RW, Ausubel FM (2000) A simple procedure for the analysis of single nucleotide polymorphisms facilitates map-based cloning in Arabidopsis. Plant Physiol 124: 1483-1492.
9. Gao ZS, van de Weg WE, Schaart JG, Schouten HJ, Tran DH, Kodde LP, van der Meer IM, van der Geest AHM, Kodde J, Breiteneder H, Hoffmann-Sommergruber K, Bosch D, Gilissen LJWJ (2005a) Genomic cloning and linkage mapping of the Mal d 1 (PR-10) gene family in apple (Malus domestica). Theor Appl Genet 111: 171-183.
10. Gao ZS, van de Weg WE, Schaart JG, van der Meer IM, Kodde L, Laimer M, Breiteneder H, Hoffmann-Sommergruber K, Gilissen LJWJ (2005b) Linkage map positions and allelic diversity of two Mal d 3 (non-specific lipid transfer protein) genes in the cultivated apple (Malus domestica). Theor Appl Genet 110: 479-491.
11. Garces-Claver A, Fellman SM, Gil-Ortega R, Jahn M, Arnedo-Andres MS (2007) Identification, validation and survey of a single nucleotide polymorphism (SNP) associated with pungency in Capsicum spp. Theor Appl Genet 115: 907-916.
12. Grant MR, Godiard L, Straube E, Ashfield T, Lewald J, Sattler A, Innes RW, Dangl JL (1995) Structure of the Arabidopsis RPM1 gene enabling dual specificity disease resistance. Science 269: 843-846.
13. Grant MR, McDowell JM, Sharpe AG, de Torres Zabala M, Lydiate DJ, Dangl JL (1998) Independent deletions of a pathogen-resistance gene in Brassica and Arabidopsis. Proc Natl Acad Sci USA 95: 15843-15848.
14. HammondKosack KE, Jones JDG (1997) Plant disease resistance genes. Annu Rev Plant Physiol Plant Mol Biol 48: 575-607.
15. Iyer-Pascuzzi AS, McCouch SR (2007) Recessive resistance genes and the Oryza sativa-Xanthomonas oryzae pv. oryzae pathosystem. Mol Plant-Microbe Interact 20: 731-739.
16. Jones DA, Jones JDG (1997) The role of leucine-rich repeat proteins in plant defences. Adv Bot Res Inc Adv Plant Pathol 24: 89-167.
17. Joobeur T, King JJ, Nolin SJ, Thomas CE, Dean RA (2004) The fusarium wilt resistance locus Fom-2 of melon contains a single resistance gene with complex features. Plant J 39: 283-297.
18. Kim DS, Kim DH, Yoo JH, Kim BD (2006) Cleaved amplified polymorphic sequence and amplified fragment length polymorphism markers linked to the fertility restorer gene in chili pepper (Capsicum annuum L.). Mol Cell 21: 135-140.
19. Konieczny A, Ausubel FM (1993) A procedure for mapping arabidopsis mutations using codominant ecotype-specific PCR-based markers. Plant J 4: 403-410.
20. Kwok S, Kellogg DE, McKinney N, Spasic D, Goda L, Levenson C, Sninsky JJ (1990) Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies. Nucl Acids Res 18: 999-1005.
21. Leach JGCT (1938) Fusarium wilt of muskmelons in Minnesota. Minnesota Agric Exp Station Tech Bull 129: 32.
22. Martin GB, Bogdanove AJ, Sessa G (2003) Understanding the functions of plant disease resistance proteins. Annu Rev Plant Biol 54: 23-61.
23. Martyn RDBL, Amador J (1987) Fusarium wilt (F. oxysporum f. sp. melonis race 0) of muskmelon in Texas. Plant Dis 70: 233-236.
24. Martyn RD, Park Y, Lovic BR, Miller ME (1996) The role of double stranded RNA (dsRNA) in the growth and virulence of the melon pathogen, Monosporascus cannonballus. Cucurbits Towards 2000: 269-279.
25. McCreight JD, Nerson H, Grumet R (1993) Melon Cucumis melo L. In: Kalloo G, Berch BO (eds) Genetic improvement of vegetable crops. Pergamon Press, Oxford, pp 267-294.
26. Michelmore RW, Meyers BC (1998) Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Res 8: 1113-1130.
27. Mondragon-Palomino M, Meyers BC, Michelmore RW, Gaut BS (2002) Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana. Genome Res 12: 1305-1315.
28. Newton CR, Graham A, Heptinstall LE, Powell SJ, Summers C, Kalsheker N, Smith JC, Markham AF (1989) Analysis of any point mutation in DNA: the amplification refractory mutation system (ARMS). Nucl Acid Res 17: 2503-2516.
29. Risser G, Mas P (1965) Putting obviousness of several races of Fusarium oxysporum f melonis. Ann Amelior Plant 15: 405-408.
30. Risser G, Banihashemi Z, Davis DW (1976) Proposed nomenclature of Fusarium-oxysporum-f sp melonis races and resistance genes in Cucumis melo. Phytopathology 66: 1105-1106.
31. Robinson RW, Munger HM, Whitaker TW, Bohn GW (1976) Genes of Cucurbitaceae. Hortscience 11: 554-568.
32. Sherf AF, MacNab AA (1986) Vegetable diseases and their control, 2nd edn. Wiley, New York.
33. Stahl EA, Dwyer G, Mauricio R, Kreitman M, Bergelson J (1999) Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis. Nature 400: 667-671.
34. Tian D, Traw MB, Chen JQ, Kreitman M, Bergelson J (2003) Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana. Nature 423: 74-77.
35. Wang YH, Thomas CE, Dean RA (2000) Genetic mapping of a fusarium wilt resistance gene (Fom-2) in melon (Cucumis melo L.). Mol Breed 6: 379-389.
36. Wang YH, Choi WB, Thomas CE, Dean RA (2002) Cloning of disease-resistance homologues in end sequence of BAC clones linked to Fom-2, a gene conferring resistance to fusarium wilt in melon (Cucumis melo L.). Genome 45: 473-480.
37. Wu DY, Ugozzoli L, Pal BK, Wallace RB (1989) Allele-specific enzymatic amplification of beta-globin genomic DNA for diagnosis of sickle cell anemia. Proc Natl Acad Sci USA 86: 2757-2760.
38. Yeam I, Kang BC, Lindeman W, Frantz JD, Faber N, Jahn MM (2005) Allele-specific CAPS markers based on point mutations in resistance alleles at the pvr1 locus encoding eIF4E in Capsicum. Theor Appl Genet 112: 178-186.
39. Zheng XY, Wolff DW, Baudracco-Arnas S, Pitrat M (1999) Development and utility of cleaved amplified polymorphic sequences (CAPS) and restriction fragment length polymorphisms (RFLPs) linked to the Fom-2 fusarium wilt resistance gene in melon (Cucumis melo L.). Theor Appl Genet 99: 453-463.
40. Zink FW, Gubler WD (1985) Inheritance of resistance in muskmelon to fusarium-wilt. J Am Soc Hort Sci 110: 600-604.