Microbial carbon oxidation rates and pathways in sediments of two Tanzanian mangrove forests

Biogeochemistry

Volumn 103, Issue 1, 2011, Pages 143-158

  Kristensen, Erik ^a   Mangion, Perrine ^b   Tang, Min ^c   Flindt, Mogens R ^a   Holmer, Marianne ^a   Ulomi, Shadrack ^d  

^a UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

^b VRIJE UNIVERSITEIT BRUSSEL   (Belgium)

^c HAINAN UNIVERSITY   (China)

^d UNIVERSITY OF DAR ES SALAAM   (Tanzania)

Author keywords

Biogenic structures; Carbon oxidation; CO2 flux measurement; Electron acceptor; Mangrove sediment

Indexed keywords

ALGA; ANTHROPOGENIC EFFECT; BENTHOS; BIOGENIC STRUCTURE; CARBON DIOXIDE; CARBON FLUX; DENITRIFICATION; DISTURBANCE; FLUX MEASUREMENT; INTERTIDAL ENVIRONMENT; MANGROVE; METABOLISM; MICROBIAL ACTIVITY; ORGANIC CARBON; OXIDATION; PARTITIONING; POREWATER; REACTION RATE; SEDIMENT CHEMISTRY; SPATIOTEMPORAL ANALYSIS;

TANZANIA;

ALGAE; DECAPODA (CRUSTACEA);

EID: 79952102150     PISSN: 01682563     EISSN: 1573515X     Source Type: Journal    
DOI: 10.1007/s10533-010-9453-2     Document Type: Article

References (52)

1. Allaway WG, Curran M, Hollington LM, Ricketts MC, Skelton NJ (2001) Gas space and oxygen exchange in roots of Avicennia marina (Forssk.) Vierh. var. australasica (Walp.) Moldenke ex N. C. Duke, the Grey Mangrove. Wetl Ecol Manag 9: 211-218.
2. Alongi DM (1994) Zonation and seasonality of benthic primary production and community respiration in tropical mangrove forests. Oecologia 98: 320-327.
3. Alongi DM, Tirendi F, Dixon P, Trott LA, Brunskill GJ (1999) Mineralization of organic matter in intertidal sediments of a tropical semi-enclosed delta. Estuar Coast Shelf Sci 48: 451-467.
4. Alongi DM, Tirendi F, Clough BF (2000) Below-ground decomposition of organic matter in forests of the mangroves Rhizophora stylosa and Avicennia marina along the arid coast of Western Australia. Aquat Bot 68: 97-122.
5. Alongi DM, Sasekumar A, Chong CV, Pfizner J, Trott LA, Tirendi F, Dixon P, Brunskill GJ (2004) Sediment accumulation and organic material flux in a managed mangrove ecosystem: estimates of land-ocean-atmosphere exchange in peninsular Malaysia. Mar Geol 208: 383-402.
6. Alongi DM, Pfitzner J, Trott LA, Tirendi F, Dixon P, Klumpp DW (2005) Rapid sediment accumulation and microbial mineralization in forests of the mangrove Kandelia candel in the Jiulongliang Estuary, China. Estuar Coast Shelf Sci 63: 605-618.
7. Alongi DM, Trott LA, Rachmansyah, Tirendi F, McKinnon AD, Undu MC (2008) Growth and development of mangrove forests overlying smothered coral reefs, Sulawesi and Sumatra, Indonesia. Mar Ecol Prog Ser 370: 97-109.
8. Berelson WM, Johnson K, Coale K, Li HC (2002) Organic matter diagenesis in the sediments of the San Pedro Shelf along a transect affected by sewage effluent. Cont Shelf Res 22: 1101-1115.
9. 2 flux from mangrove surrounding waters. Geophys Res Lett 30: 1558. doi: 10. 1029/2003GL017143.
10. Bouillon S, Dahdouh-Guebas F, Rao AVVS, Koedam N, Dehairs F (2003) Sources of organic carbon in mangrove sediments: variability and possible ecological implications. Hydrobiologia 495: 33-39.
11. Bouillon S, Middelburg JJ, Dehairs F, Borges AV, Abril G, Flindt MR, Ulomi S, Kristensen E (2007) Importance of intertidal sediment processes and porewater exchange on the water column biogeochemistry in a pristine mangrove creek (Ras Dege, Tanzania). Biogeosciences 4: 311-322.
12. Bouillon S, Borges AV, Castañeda-Moya E, Diele K, Dittmar T, Duke NC, Kristensen E, Lee SY, Marchand C, Middelburg JJ, Rivera-Monroy VH, Smith TJ III, Twilley RR (2008) Mangrove production and carbon sinks: a revision of global budget estimates. Global Biogeochem Cycles 22: GB2013. doi: 10. 1029/2007GB003052.
13. Canfield DE, Thamdrup B, Hansen JW (1993) The anaerobic degradation of organic matter in Danish coastal sediments: iron reduction, manganese reduction, and sulfate reduction. Geochim Cosmochim Acta 57: 3867-3883.
14. Canfield DE, Kristensen E, Thamdrup B (2005) Aquatic geomicrobiology. Elsevier, Amsterdam.
15. Clark MW, McConchie D, Lewis DW, Saenger P (1998) Redox stratification and heavy metal partitioning in Avicennia-dominated mangrove sediments: a geochemical model. Chem Geol 149: 147-171.
16. Corredor JE, Morell JM (1994) Nitrate depuration of secondary sewage effluents in mangrove sediments. Estuaries 17: 295-300.
17. De la Iglesia HO, Rodriquez EM, Dezi RE (1994) Burrow plugging in the crab Uca uruguayensis and its synchronization with photoperiod and tides. Physiol Behav 55: 913-919.
18. Dittmar T, Hertkorn N, Kattner G, Lara RJ (2006) Mangroves, a major source of dissolved organic carbon to the oceans. Glob Biogeochem Cycles 20: GB1012. doi: 10. 1029/2005GB002570.
19. Ferreira TO, Otero XL, Vidal-Torrado P, Macías F (2007) Effects of bioturbation by root and crab activity on iron and sulfur biogeochemistry in mangrove substrate. Geoderma 142: 36-46.
20. Fossing H, Jørgensen BB (1989) Measurement of bacterial sulfate-reduction in sediments: evaluation of a single-step chromium reduction method. Biogeochemistry 8: 205-222.
21. Granek E, Ruttenberg BI (2008) Changes in biotic and abiotic processes following mangrove clearing. Estuar Coast Shelf Sci 80: 555-562.
22. + in marine and freshwaters. Limnol Oceanogr 37: 1113-1118.
23. Holmer M, Andersen FØ, Holmboe N, Kristensen E, Thongtham N (1999) Transformation and exchange processes in the Bangrong mangrove forest-seagrass bed system, Thailand. Seasonal and spatial variations in benthic metabolism and sulfur biogeochemistry. Aquat Microb Ecol 20: 203-212.
24. Jennerjahn TC, Ittekkot V (2002) Relevance of mangroves for the production and deposition of organic matter along tropical continental margins. Naturwissenschaften 89: 23-30.
25. Jensen MM, Thamdrup B, Rysgaard S, Holmer M, Fossing H (2003) Rates and regulation of microbial iron reduction in sediments of the Baltic-North Sea transition. Biogeochemistry 65: 295-317.
26. Jørgensen BB (1978) A comparison of methods for the quantification of bacterial sulfate reduction in coastal marine sediments. Geomicrobiol J 1: 11-27.
27. Kitaya Y, Yabuki K, Kiyota M, Tani A, Hirano T, Aiga I (2002) Gas exchange and oxygen concentration in pneumatophores and prop roots of four mangrove species. Trees 16: 155-158.
28. Kostka JE, Luther GW (1994) Partitioning and speciation of solid phase iron in saltmarsh sediments. Geochim Cosmochim Acta 58: 1701-1710.
29. Kostka JE, Gribsholt B, Petrie E, Dalton D, Skelton H, Kristensen E (2002) The rates and pathways of carbon oxidation in bioturbated saltmarsh sediments. Limnol Oceanogr 47: 230-240.
30. Kristensen E (2008) Mangrove crabs as ecosystem engineers; with emphasis on sediment processes. J Sea Res 59: 30-43.
31. Kristensen E, Alongi DM (2006) Control by fiddler crabs (Uca vocans) and plant roots (Avicennia marina) on carbon, iron and sulfur biogeochemistry in mangrove sediment. Limnol Oceanogr 51: 1557-1571.
32. Kristensen E, Andersen FØ (1987) Determination of organic carbon in marine sediments: comparison of two CHN-analyzer methods. J Exp Mar Biol Ecol 109: 15-23.
33. 2-), with emphasis on substrate origin, degradation kinetics and the role of bioturbation. Geochim Cosmochim Acta 65: 419-434.
34. Kristensen E, King GM, Banta GT, Holmer M, Jensen MH, Hansen K, Bussarawit N (1994) Acetate turnover, sulfate reduction and carbon metabolism in sediments of the Ao Nam Bor mangrove, Phuket, Thailand. Mar Ecol Prog Ser 109: 245-255.
35. Kristensen E, Andersen FØ, Holmboe N, Holmer M, Thongtham N (2000) Carbon and nitrogen mineralization in sediment of the Bangrong mangrove area, Phuket, Thailand. Aquat Microb Ecol 22: 199-213.
36. Kristensen E, Bouillon S, Dittmar T, Marchand C (2008a) Organic carbon dynamics in mangrove ecosystems. Aquat Bot 89: 201-219.
37. 4 to the atmosphere by sediments and open waters in two Tanzanian mangrove forests. Mar Ecol Prog Ser 370: 53-67.
38. Lee RY, Joye SB (2006) Seasonal patterns of nitrogen fixation and denitrification in oceanic mangrove habitats. Mar Ecol Prog Ser 307: 127-141.
39. Lovelock CE (2008) Soil respiration and belowground carbon allocation in mangrove forests. Ecosystems 11: 342-354.
40. Lovley DR, Phillips EJP (1987) Rapid assay for microbially reducible ferric iron in aquatic sediments. Appl Environ Microbiol 53: 1536-1540.
41. Marchand C, Baltzer F, Lallier-Verges E, Alberic P (2004) Pore-water chemistry in mangrove sediments: relationship with species composition and developmental stages (French Guiana). Mar Geol 208: 361-381.
42. Middelburg JJ, Nieuwenhuize J, Slim FJ, Ohowa B (1996) Sediment biogeochemistry in an East African mangrove forest (Gazi Bay, Kenya). Biogeochemistry 34: 133-155.
43. Nielsen LP (1992) Denitrification in sediment determined from isotope pairing. FEMS Microbiol Ecol 86: 357-362.
44. Nielsen OI, Kristensen E, Macintosh DJ (2003) Impact of fiddler crabs (Uca spp) on rates and pathways of benthic mineralization in deposited shrimp pond waste. J Exp Mar Biol Ecol 289: 59-81.
45. Parsons TR, Maita Y, Lalli CM (1984) A manual of chemical and biological methods for seawater analysis. Pergamon Press, Oxford.
46. Penha-Lopes G, Bartolini F, Limbu S, Cannicci S, Kristensen E, Paula J (2009) Are fiddler crabs potentially useful ecosystem engineers in mangrove wastewater wetlands? Mar Pollut Bull 58: 1694-1703.
47. Poungparn S, Komiyama A, Tanaka A, Sangtiean T, Maknual C, Kato S, Tanapermpool P, Patanaponpaiboon P (2009) Carbon dioxide emission through soil respiration in a secondary mangrove forest of eastern Thailand. J Trop Ecol 25: 393-400.
48. Purnobasuki H, Suzuki M (2005) Aerenchyma tissue development and gas-pathway structure in root of Avicennia marina (Forsk.) Vierh. J Plant Res 118: 285-294.
49. Ridd PV (1996) Flow through animal burrows in mangrove creeks. Estuar Coast Shelf Sci 43: 617-625.
50. Rivera-Monroy VH, Twilley RR (1996) The relative role of denitrification and immobilization in the fate of inorganic nitrogen in mangrove sediments (Terminos Lagoon, Mexico). Limnol Oceanogr 41: 284-296.
51. Roden EE, Wetzel RG (2002) Kinetics of microbial Fe(III) oxide reduction in freshwater wetland sediments. Limnol Oceanogr 47: 198-211.
52. Susilo A, Ridd PV, Thomas S (2005) Comparison between tidally driven groundwater flow and flushing of animal burrows in tropical mangrove swamps. Wetl Ecol Manag 13: 377-388.