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Volumn 134, Issue 8, 2011, Pages

Look before you leap: A confidence-based method for selecting species criticality while avoiding negative populations in -leaping

Author keywords

[No Author keywords available]

Indexed keywords

HIGH PROBABILITY; NEGATIVE POPULATIONS; NUMERICAL EXAMPLE; POISSON RANDOM VARIABLES; REACTANT SPECIES; REACTION CHANNELS; REACTION EVENTS; SIMULATED SYSTEM; SPECIES NUMBER; STOCHASTIC SIMULATION ALGORITHMS; TIME STEP; TIME-PERIODS;

EID: 79952080934     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3554385     Document Type: Article
Times cited : (10)

References (23)
  • 5
    • 0017030517 scopus 로고
    • A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
    • DOI 10.1016/0021-9991(76)90041-3
    • D. T. Gillespie, J. Comput. Phys. 22 (4), 403 (1976). 10.1016/0021-9991(76)90041-3 (Pubitemid 8008311)
    • (1976) Journal of Computational Physics , vol.22 , Issue.4 , pp. 403-434
    • Gillepsie, D.T.1
  • 6
    • 33645429016 scopus 로고
    • 10.1021/j100540a008
    • D. T. Gillespie, J. Phys. Chem. 81 (25), 2340 (1977). 10.1021/j100540a008
    • (1977) J. Phys. Chem. , vol.81 , Issue.25 , pp. 2340
    • Gillespie, D.T.1
  • 7
    • 0001455869 scopus 로고
    • 10.1063/1.1678692
    • T. G. Kurtz, J. Chem. Phys. 57, 2976 (1972). 10.1063/1.1678692
    • (1972) J. Chem. Phys. , vol.57 , pp. 2976
    • Kurtz, T.G.1
  • 8
    • 0035933994 scopus 로고    scopus 로고
    • Approximate accelerated stochastic simulation of chemically reacting systems
    • DOI 10.1063/1.1378322
    • D. T. Gillespie, J. Chem. Phys. 115, 1716 (2001). 10.1063/1.1378322 (Pubitemid 32715518)
    • (2001) Journal of Chemical Physics , vol.115 , Issue.4 , pp. 1716-1733
    • Gillespie, D.T.1
  • 9
    • 42649105096 scopus 로고    scopus 로고
    • Incorporating postleap checks in tau-leaping
    • DOI 10.1063/1.2819665
    • D. F. Anderson, J. Chem. Phys. 128, 054103 (2008). 10.1063/1.2819665 (Pubitemid 351598437)
    • (2008) Journal of Chemical Physics , vol.128 , Issue.5 , pp. 054103
    • Anderson, D.F.1
  • 10
    • 31544465969 scopus 로고    scopus 로고
    • Efficient step size selection for the tau-leaping simulation method
    • DOI 10.1063/1.2159468, 044109
    • Y. Cao, D. T. Gillespie, and L. R. Petzold, J. Chem. Phys. 124 (4), 044109 (2006). 10.1063/1.2159468 (Pubitemid 43166307)
    • (2006) Journal of Chemical Physics , vol.124 , Issue.4 , pp. 1-11
    • Cao, Y.1    Gillespie, D.T.2    Petzold, L.R.3
  • 12
    • 23944491675 scopus 로고    scopus 로고
    • Avoiding negative populations in explicit Poisson tau-leaping
    • DOI 10.1063/1.1992473, 054104
    • Y. Cao, D. T. Gillespie, and L. R. Petzold, J. Chem. Phys. 123, 054104 (2005). 10.1063/1.1992473 (Pubitemid 41203876)
    • (2005) Journal of Chemical Physics , vol.123 , Issue.5 , pp. 1-8
    • Cao, Y.1    Gillespie, D.T.2    Petzold, L.R.3
  • 13
    • 3142543968 scopus 로고    scopus 로고
    • Binomial leap methods for simulating stochastic chemical kinetics
    • DOI 10.1063/1.1810475
    • T. Tian and K. Burrage, J. Chem. Phys. 121, 10356 (2004). 10.1063/1.1810475 (Pubitemid 40001577)
    • (2004) Journal of Chemical Physics , vol.121 , Issue.21 , pp. 10356-10364
    • Tian, T.1    Burrage, K.2
  • 17
    • 0033533954 scopus 로고    scopus 로고
    • Investigating autocatalytic gene expression systems through mechanistic modeling
    • DOI 10.1006/jtbi.1999.1010
    • T. A. Carrier and J. D. Keasling, J. Theor. Biol. 201 (1), 25 (1999). 10.1006/jtbi.1999.1010 (Pubitemid 29531310)
    • (1999) Journal of Theoretical Biology , vol.201 , Issue.1 , pp. 25-36
    • Carrier, T.A.1    Keasling, J.D.2
  • 18
    • 0036204115 scopus 로고    scopus 로고
    • 10.1093/bioinformatics/18.3.470
    • A. M. Kierzek, Methods Biochem. Anal 18 (3), 470 (2002). 10.1093/bioinformatics/18.3.470
    • (2002) Methods Biochem. Anal , vol.18 , Issue.3 , pp. 470
    • Kierzek, A.M.1
  • 20
  • 21
    • 0001425072 scopus 로고    scopus 로고
    • 10.1103/PhysRevE.56.2597
    • E. Brunet and B. Derrida, Phys. Rev. E 56 (3), 2597 (1997). 10.1103/PhysRevE.56.2597
    • (1997) Phys. Rev. e , vol.56 , Issue.3 , pp. 2597
    • Brunet, E.1    Derrida, B.2
  • 22
    • 31144454673 scopus 로고    scopus 로고
    • Molecular-dynamics simulations and master-equation description of a chemical wave front: Effects of density and size of reaction zone on propagation speed
    • DOI 10.1063/1.2161209, 034503
    • J. S. Hansen, B. Nowakowski, and A. Lemarchand, J. Chem. Phys. 124, 034503 (2006). 10.1063/1.2161209 (Pubitemid 43133776)
    • (2006) Journal of Chemical Physics , vol.124 , Issue.3 , pp. 1-6
    • Hansen, J.S.1    Nowakowski, B.2    Lemarchand, A.3
  • 23
    • 33749989765 scopus 로고    scopus 로고
    • A "partitioned leaping" approach for multiscale modeling of chemical reaction dynamics
    • DOI 10.1063/1.2354085
    • L. A. Harris and P. Clancy, J. Chem. Phys. 125, 144107 (2006). 10.1063/1.2354085 (Pubitemid 44570773)
    • (2006) Journal of Chemical Physics , vol.125 , Issue.14 , pp. 144107
    • Harris, L.A.1    Clancy, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.