Estimation of fiber orientation and spin density distribution by diffusion deconvolution

NeuroImage

Volumn 55, Issue 3, 2011, Pages 1054-1062

  Yeh, Fang Cheng ^a   Wedeen, Van Jay ^b   Tseng, Wen Yih Isaac ^c,d  

^a CARNEGIE MELLON UNIVERSITY   (United States)

^b HARVARD MEDICAL SCHOOL   (United States)

^c NATIONAL TAIWAN UNIVERSITY HOSPITAL   (Taiwan)

^d NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

Diffusion deconvolution; Diffusion MRI; Fiber ODF; Fiber spin density

Indexed keywords

ADULT; ARTICLE; DENSITY; DIFFUSION DECONVOLUTION; DIFFUSION WEIGHTED IMAGING; FIBER SPIN DENSITY; FRACTIONAL ANISOTROPY; HUMAN; IMAGE QUALITY; IMAGE RECONSTRUCTION; IN VIVO STUDY; MALE; MATHEMATICAL ANALYSIS; NERVE FIBER; NERVE TRACT; PHANTOM; PRIORITY JOURNAL; SIGNAL NOISE RATIO;

ADULT; ANISOTROPY; BRAIN MAPPING; DIFFUSION MAGNETIC RESONANCE IMAGING; DIFFUSION TENSOR IMAGING; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MALE; MODELS, NEUROLOGICAL; MODELS, STATISTICAL; NERVE FIBERS; PHANTOMS, IMAGING;

EID: 79952048755     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2010.11.087     Document Type: Article

References (38)

1. Aganj I., Lenglet C., Sapiro G., Yacoub E., Ugurbil K., Harel N. Reconstruction of the orientation distribution function in single- and multiple-shell q-ball imaging within constant solid angle. Magn. Reson. Med. 2010, 64:554-566.
2. Alexander D.C. Maximum entropy spherical deconvolution for diffusion MRI. Inf. Process. Med. Imaging 2005, 19:76-87.
3. Alexander A.L., Hasan K.M., Lazar M., Tsuruda J.S., Parker D.L. Analysis of partial volume effects in diffusion-tensor MRI. Magn. Reson. Med. 2001, 45:770-780.
4. Assaf Y., Basser P.J. Composite hindered and restricted model of diffusion (CHARMED) MR imaging of the human brain. Neuroimage 2005, 27:48-58.
5. Basser P.J., Pierpaoli C. Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI. J. Magn. Reson. B 1996, 111:209-219.
6. Basser P.J., Mattiello J., LeBihan D. Estimation of the effective self-diffusion tensor from the NMR spin echo. J. Magn. Reson. B 1994, 103:247-254.
7. Basser P.J., Pajevic S., Pierpaoli C., Duda J., Aldroubi A. In vivo fiber tractography using DT-MRI data. Magn. Reson. Med. 2000, 44:625-632.
8. Behrens T.E., Johansen-Berg H., Woolrich M.W., Smith S.M., Wheeler-Kingshott C.A., Boulby P.A., Barker G.J., Sillery E.L., Sheehan K., Ciccarelli O., Thompson A.J., Brady J.M., Matthews P.M. Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging. Nat. Neurosci. 2003, 6:750-757.
9. Callaghan P.T. Principles of Nuclear Magnetic Resonance Microscopy 1993, 438-441. Clarendon Press, Oxford.
10. Canales-Rodriguez E.J., Iturria-Medina Y., Aleman-Gomez Y., Melie-Garcia L. Deconvolution in diffusion spectrum imaging. Neuroimage 2010, 50:136-149.
11. Cho K.H., Yeh C.H., Tournier J.D., Chao Y.P., Chen J.H., Lin C.P. Evaluation of the accuracy and angular resolution of q-ball imaging. Neuroimage 2008, 42:262-271.
12. Correia M.M., Carpenter T.A., Williams G.B. Looking for the optimal DTI acquisition scheme given a maximum scan time: are more b-values a waste of time?. Magn. Reson. Imaging 2009, 27:163-175.
13. Dell'acqua F., Scifo P., Rizzo G., Catani M., Simmons A., Scotti G., Fazio F. A modified damped Richardson-Lucy algorithm to reduce isotropic background effects in spherical deconvolution. Neuroimage 2009, 49:1446-1458.
14. Descoteaux M., Angelino E., Fitzgibbons S., Deriche R. Regularized, fast, and robust analytical Q-ball imaging. Magn. Reson. Med. 2007, 58:497-510.
15. Descoteaux M., Deriche R., Knosche T.R., Anwander A. Deterministic and probabilistic tractography based on complex fibre orientation distributions. IEEE Trans. Med. Imaging 2009, 28:269-286.
16. Jansons K.M., Alexander D.C. Persistent angular structure: new insights from diffusion magnetic resonance imaging data. Inverse Prob. 2003, 19:1031-1046.
17. Jensen J.H., Helpern J.A., Ramani A., Lu H., Kaczynski K. Diffusional kurtosis imaging: the quantification of non-gaussian water diffusion by means of magnetic resonance imaging. Magn. Reson. Med. 2005, 53:1432-1440.
18. Kaden E., Anwander A., Knosche T.R. Variational inference of the fiber orientation density using diffusion MR imaging. Neuroimage 2008, 42:1366-1380.
19. Khachaturian M.H., Wisco J.J., Tuch D.S. Boosting the sampling efficiency of q-Ball imaging using multiple wavevector fusion. Magn. Reson. Med. 2007, 57:289-296.
20. Kuo L.W., Chen J.H., Wedeen V.J., Tseng W.Y. Optimization of diffusion spectrum imaging and q-ball imaging on clinical MRI system. Neuroimage 2008, 41:7-18.
21. Lazar M., Jensen J.H., Xuan L., Helpern J.A. Estimation of the orientation distribution function from diffusional kurtosis imaging. Magn. Reson. Med. 2008, 60:774-781.
22. Mori S., Crain B.J., Chacko V.P., van Zijl P.C. Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging. Ann. Neurol. 1999, 45:265-269.
23. Moseley M.E., de Crespigny A.J., Roberts T.P., Kozniewska E., Kucharczyk J. Early detection of regional cerebral ischemia using high-speed MRI. Stroke 1993, 24:I60-I65.
24. Özarslan E., Mareci T.H. Generalized diffusion tensor imaging and analytical relationships between diffusion tensor imaging and high angular resolution diffusion imaging. Magn. Reson. Med. 2003, 50:955-965.
25. Özarslan E., Shepherd T.M., Vemuri B.C., Blackband S.J., Mareci T.H. Resolution of complex tissue microarchitecture using the diffusion orientation transform (DOT). Neuroimage 2006, 31:1086-1103.
26. Pierpaoli C., Basser P.J. Toward a quantitative assessment of diffusion anisotropy. Magn. Reson. Med. 1996, 36:893-906.
27. Pierpaoli C., Jezzard P., Basser P.J., Barnett A., Di Chiro G. Diffusion tensor MR imaging of the human brain. Radiology 1996, 201:637-648.
28. Tournier J.D., Calamante F., Gadian D.G., Connelly A. Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution. Neuroimage 2004, 23:1176-1185.
29. Tournier J.D., Calamante F., Connelly A. Robust determination of the fibre orientation distribution in diffusion MRI: non-negativity constrained super-resolved spherical deconvolution. Neuroimage 2007, 35:1459-1472.
30. Tournier J.D., Yeh C.H., Calamante F., Cho K.H., Connelly A., Lin C.P. Resolving crossing fibres using constrained spherical deconvolution: validation using diffusion-weighted imaging phantom data. Neuroimage 2008, 42:617-625.
31. Tuch D.S. Q-ball imaging. Magn. Reson. Med. 2004, 52:1358-1372.
32. Tuch D.S., Reese T.G., Wiegell M.R., Makris N., Belliveau J.W., Wedeen V.J. High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity. Magn. Reson. Med. 2002, 48:577-582.
33. Wedeen V.J., Hagmann P., Tseng W.Y., Reese T.G., Weisskoff R.M. Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging. Magn. Reson. Med. 2005, 54:1377-1386.
34. Wedeen V.J., Wang R.P., Schmahmann J.D., Benner T., Tseng W.Y., Dai G., Pandya D.N., Hagmann P., D'Arceuil H., de Crespigny A.J. Diffusion spectrum magnetic resonance imaging (DSI) tractography of crossing fibers. Neuroimage 2008, 41:1267-1277.
35. Wiegell M.R., Larsson H.B., Wedeen V.J. Fiber crossing in human brain depicted with diffusion tensor MR imaging. Radiology 2000, 217:897-903.
36. Wu Y.C., Alexander A.L. Hybrid diffusion imaging. Neuroimage 2007, 36:617-629.
37. Yeh F.C., Wedeen V.J., Tseng W.Y. Dataset-independent reconstruction of high angular resolution diffusion sampling schemes by generalized q-space imaging. Proceedings 17th Scientific Meeting, International Society for Magnetic Resonance in Medicine, Honolulu 2009, 3545.
38. Yeh F.C., Wedeen V.J., Tseng W.Y. Generalized q-sampling imaging. IEEE Trans. Med. Imaging 2010, 29:1626-1635.