Correction of copy number variation data using principal component analysis

2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010

Volumn , Issue , 2010, Pages 827-828

  Chen, Jiayu ^a   Liu, Jingyu ^a,b   Calhoun, Vince D ^a,b  

^a University of New Mexico   (United States)

^b MIND RESEARCH NETWORK   (United States)

Author keywords

Copy number variation; Log R ratio; Principal component analysis

Indexed keywords

COPY NUMBER; DATA QUALITY; DETECTION ACCURACY; LOW SIGNAL-TO-NOISE RATIO; PRINCIPAL COMPONENTS; R RATIO;

BIOINFORMATICS; SIGNAL TO NOISE RATIO;

PRINCIPAL COMPONENT ANALYSIS;

EID: 79952031550     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BIBMW.2010.5703928     Document Type: Conference Paper

References (3)

1. S. J. Diskin et al. "Adjustment of genomic waves in signal intensities from whole-genome SNP genotyping platforms", Nucleic Acids Res., vol. 36, e126, Sep. 2008
2. A. C. Need et al. "A genome-wide investigation of SNPs and CNVs in schizophrenia", Plos. Genet., vol. 5, e1000373, Feb. 2009
3. K. Wang et al. "PennCNV-An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data", Genome Res., vol. 17, pp. 1665-1674, Oct. 2007